Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g001110 Solanum pennellii HOM05D006923 ORTHO05D008697 1.4e-156 556.2 281 100.0
Solyc04g005090.4 Solanum lycopersicum HOM05D006923 ORTHO05D008697 1.4e-151 539.7 281 96.8
PGSC0003DMG400001928 Solanum tuberosum HOM05D006923 ORTHO05D008697 1.7e-149 532.7 284 95.1
CAN.G25.5 Capsicum annuum HOM05D006923 ORTHO05D008697 1.8e-130 469.5 293 84.6
Peaxi162Scf00266g00035 Petunia axillaris HOM05D006923 ORTHO05D008697 4.2e-124 448.4 244 91.8
Nitab4.5_0005168g0020 Nicotiana tabacum HOM05D006923 ORTHO05D008697 4.9e-117 424.9 285 80.0
Dinv31139 Davidia involucrata HOM05D006923 ORTHO05D008697 5.5e-116 421.4 280 76.8
QL03p067501 Quercus lobata HOM05D006923 ORTHO05D008697 7.9e-115 417.5 292 74.7
Migut.L01372 Erythranthe guttata HOM05D006923 ORTHO05D008697 1.0e-114 417.2 283 76.7
Actinidia24653 Actinidia chinensis HOM05D006923 ORTHO05D008697 1.9e-113 412.9 284 74.6
MSTRG.649 Avicennia marina HOM05D006923 ORTHO05D008697 1.3e-112 410.2 283 75.3
CSS0003222 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 5.3e-111 404.8 268 76.9
Cfa009080 Carpinus fangiana HOM05D006923 ORTHO05D008697 6.9e-111 404.4 242 81.4
Nn4g22963 Nelumbo nucifera HOM05D006923 ORTHO05D008697 1.5e-110 403.3 282 73.0
Cc11_g13930 Coffea canephora HOM05D006923 ORTHO05D008697 2.6e-110 402.5 251 80.1
SGA_v2.0_scaffold166G38306 Striga asiatica HOM05D006923 ORTHO05D008697 2.6e-110 402.5 243 81.1
Cpa.g.sc5.315 Carica papaya HOM05D006923 ORTHO05D008697 5.9e-110 401.4 275 74.5
CiPaw.06G077400 Carya illinoinensis HOM05D006923 ORTHO05D008697 5.0e-109 398.3 241 82.2
HanXRQChr09g0267151 Helianthus annuus HOM05D006923 ORTHO05D008697 1.9e-108 396.4 284 72.9
TAR629G1985 Trochodendron aralioides HOM05D006923 ORTHO05D008697 3.2e-108 395.6 280 70.7
GSVIVG01020133001 Vitis vinifera HOM05D006923 ORTHO05D008697 3.2e-108 395.6 280 71.4
Aqoxy3G03167 Aquilegia oxysepala HOM05D006923 ORTHO05D008697 7.2e-108 394.4 270 74.1
Atru.chr11.1922 Acer truncatum HOM05D006923 ORTHO05D008697 1.6e-107 393.3 285 71.2
ClCG05G024880 Citrullus lanatus HOM05D006923 ORTHO05D008697 7.9e-107 391.0 259 75.3
Potri.008G191900 Populus trichocarpa HOM05D006923 ORTHO05D008697 7.9e-107 391.0 240 81.7
Lj6C798T8 Lonicera japonica HOM05D006923 ORTHO05D008697 1.3e-106 390.2 292 69.9
MD13G1084200 Malus domestica HOM05D006923 ORTHO05D008697 2.3e-106 389.4 283 71.0
Gorai.009G345900 Gossypium raimondii HOM05D006923 ORTHO05D008697 3.9e-106 388.7 284 70.4
Ca_05074_v3 Cicer arietinum L. HOM05D006923 ORTHO05D008697 5.1e-106 388.3 243 77.8
COL.COLO4_36266 Corchorus olitorius HOM05D006923 ORTHO05D008697 5.1e-106 388.3 282 71.6
FAN07G0582 Fragaria x ananassa HOM05D006923 ORTHO05D008697 5.1e-106 388.3 288 71.9
FAN22G1061 Fragaria x ananassa HOM05D006923 ORTHO05D008697 5.1e-106 388.3 288 72.2
Sed0028145 Sechium edule HOM05D006923 ORTHO05D008697 6.7e-106 387.9 241 79.7
TPR.G26715 Trifolium pratense HOM05D006923 ORTHO05D008697 2.5e-105 386.0 285 67.4
Lj2g0018338 Lotus japonicus HOM05D006923 ORTHO05D008697 3.3e-105 385.6 241 77.2
Gohir.A05G320000 Gossypium hirsutum HOM05D006923 ORTHO05D008697 4.3e-105 385.2 284 70.1
Rhsim12G0127000 Rhododendron simsii HOM05D006923 ORTHO05D008697 9.7e-105 384.0 293 67.6
SalBow2G1484 Salvia bowleyana HOM05D006923 ORTHO05D008697 1.3e-104 383.6 288 69.8
SalBow2G2758 Salvia bowleyana HOM05D006923 ORTHO05D008697 1.3e-104 383.6 288 69.8
Gohir.D05G322300 Gossypium hirsutum HOM05D006923 ORTHO05D008697 1.6e-104 383.3 283 70.0
Phvul.002G078400 Phaseolus vulgaris HOM05D006923 ORTHO05D008697 1.6e-104 383.3 295 66.4
unitig_26.g10329 Utricularia gibba HOM05D006923 ORTHO05D008697 2.2e-104 382.9 283 68.6
FvH4_4g35320 Fragaria vesca HOM05D006923 ORTHO05D008697 3.7e-104 382.1 286 72.0
FAN12G2795 Fragaria x ananassa HOM05D006923 ORTHO05D008697 3.7e-104 382.1 286 72.0
CSS0013336 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 4.8e-104 381.7 236 80.1
Ciclev10032274m.g Citrus clementina HOM05D006923 ORTHO05D008697 4.8e-104 381.7 246 77.6
RcHm_v2.0_Chr4g0444951 Rosa chinensis HOM05D006923 ORTHO05D008697 4.8e-104 381.7 243 78.2
PGR102G0681 Punica granatum HOM05D006923 ORTHO05D008697 1.1e-103 380.6 287 68.6
Psat2g114680 Pisum sativum HOM05D006923 ORTHO05D008697 1.8e-103 379.8 291 67.7
Manes.05G093700 Manihot esculenta HOM05D006923 ORTHO05D008697 4.1e-103 378.6 281 71.2
Lalb_Chr16g0382621 Lupinus albus HOM05D006923 ORTHO05D008697 1.5e-102 376.7 258 72.5
PSO591G0274 Papaver somniferum HOM05D006923 ORTHO05D008697 1.7e-101 373.2 240 75.0
AUR62039449 Chenopodium quinoa HOM05D006923 ORTHO05D008697 1.1e-100 370.5 269 71.0
Glyma.02G026400 Glycine max HOM05D006923 ORTHO05D008697 1.1e-100 370.5 243 73.7
vmacro16302 Vaccinium macrocarpon HOM05D006923 ORTHO05D008697 4.2e-100 368.6 285 69.5
Hund25304 Selenicereus undatus HOM05D006923 ORTHO05D008697 9.4e-100 367.5 296 65.9
ECA246G0266 Erigeron canadensis HOM05D000793 ORTHO05D000783 1.6e-99 366.7 271 70.5
CANSAT01G2170 Cannabis sativa HOM05D006923 ORTHO05D008697 2.7e-99 365.9 290 67.2
Prupe.1G262600 Prunus persica HOM05D006923 ORTHO05D008697 2.7e-99 365.9 264 71.2
Thecc.02G238100 Theobroma cacao HOM05D006923 ORTHO05D008697 3.9e-98 362.1 279 67.7
Carub.0002s0542 Capsella rubella HOM05D006923 ORTHO05D008697 6.7e-98 361.3 285 64.9
THA.LOC104819679 Tarenaya hassleriana HOM05D006923 ORTHO05D008697 2.0e-97 359.8 287 65.5
arahy.Tifrunner.gnm1.ann1.EW3DBQ Arachis hypogaea HOM05D006923 ORTHO05D008697 9.7e-97 357.5 243 71.2
EL10Ac6g13089 Beta vulgaris HOM05D006923 ORTHO05D008697 2.8e-96 355.9 274 66.4
AT1G59840 Arabidopsis thaliana HOM05D006923 ORTHO05D008697 6.3e-96 354.8 241 72.6
CDE04G0355 Ceratophyllum demersum HOM05D006923 ORTHO05D008697 1.8e-95 353.2 259 65.6
Thhalv10023990m.g Eutrema salsugineum HOM05D006923 ORTHO05D008697 1.8e-95 353.2 271 66.8
CsaV3_5G032010 Cucumis sativus L. HOM05D006923 ORTHO05D008697 3.1e-95 352.4 271 69.4
BcaB04g20234 Brassica carinata HOM05D006923 ORTHO05D008697 6.9e-95 351.3 241 71.8
Sabra08G0145400 Salix brachista HOM05D006923 ORTHO05D008697 1.5e-94 350.1 225 78.7
Aa31LG2G10350 Aethionema arabicum HOM05D006923 ORTHO05D008697 2.0e-94 349.7 256 67.6
AL2G16930 Arabidopsis lyrata HOM05D006923 ORTHO05D008697 3.4e-94 349.0 241 71.8
BolC1t03615H Brassica oleracea HOM05D006923 ORTHO05D008697 2.2e-93 346.3 277 64.6
arahy.Tifrunner.gnm1.ann1.NUE0XS Arachis hypogaea HOM05D006923 ORTHO05D008697 5.0e-93 345.1 225 73.3
Sp2g04730 Schrenkiella parvula HOM05D006923 ORTHO05D008697 2.5e-92 342.8 241 70.1
Aa31LG1G14870 Aethionema arabicum HOM05D006923 ORTHO05D008697 3.2e-92 342.4 289 61.9
Sc11g0001490 Simmondsia chinensis HOM05D006923 ORTHO05D008697 4.2e-92 342.0 268 66.4
BcaC09g49455 Brassica carinata HOM05D006923 ORTHO05D008697 1.6e-91 340.1 287 63.1
C01p36540 Brassica napus HOM05D006923 ORTHO05D008697 1.6e-91 340.1 247 69.6
Lsat_1_v5_gn_7_91800 Lactuca sativa HOM05D006923 ORTHO05D008697 2.3e-90 336.3 254 69.3
TWI18G0575 Tripterygium wilfordii HOM05D006923 ORTHO05D008697 5.7e-89 331.6 250 69.6
Os04g0650500 Oryza sativa ssp. japonica HOM05D006923 ORTHO05D008697 2.2e-88 329.7 246 65.0
BcaC06g31796 Brassica carinata HOM05D006923 ORTHO05D008697 1.1e-87 327.4 255 65.9
BcaNung06340 Brassica carinata HOM05D006923 ORTHO05D008697 2.4e-87 326.2 225 71.6
BraA01t03022Z Brassica rapa HOM05D006923 ORTHO05D008697 4.1e-87 325.5 271 63.5
A01p28870 Brassica napus HOM05D006923 ORTHO05D008697 9.1e-87 324.3 261 65.1
HPP92_026426 Vanilla planifolia HOM05D006923 ORTHO05D008697 1.2e-86 323.9 287 59.9
Zm00001eb068300 Zea mays HOM05D006923 ORTHO05D008697 3.2e-84 315.8 241 64.7
Medtr5g037050 Medicago truncatula HOM05D006923 ORTHO05D008697 3.6e-83 312.4 261 63.6
Haze_12112 Corylus avellana HOM05D006923 ORTHO05D008697 8.8e-82 307.8 188 80.9
ATR0624G013 Amborella trichopoda HOM05D006923 ORTHO05D008697 2.0e-81 306.6 250 60.8
MELO3C012038.2 Cucumis melo HOM05D006923 ORTHO05D008697 1.1e-79 300.8 244 66.8
VMungo1215G1603 Vigna mungo HOM05D006923 ORTHO05D008697 6.5e-77 291.6 201 70.6
AUR62026532 Chenopodium quinoa HOM05D006923 ORTHO05D008697 4.2e-76 288.9 239 63.6
CARHR053250 Cardamine hirsuta HOM05D006923 ORTHO05D008697 5.4e-71 271.9 186 72.0
Duzib268G0289 Durio zibethinus HOM05D006923 ORTHO05D008697 8.9e-66 254.6 285 53.0
Mapoly0001s0231 Marchantia polymorpha HOM05D006923 ORTHO05D008697 8.3e-64 248.1 237 54.9
FAN17G2763 Fragaria x ananassa HOM05D006923 ORTHO05D008697 3.1e-63 246.1 288 51.7
Pp3c3_23340 Physcomitrium patens HOM05D006923 ORTHO05D008697 3.1e-63 246.1 228 55.3
Nitab4.5_0001908g0040 Nicotiana tabacum HOM05D006923 ORTHO05D008697 2.9e-61 239.6 279 53.4
CBR_g3926 Chara braunii HOM05D006923 ORTHO05D008697 1.7e-56 223.8 230 48.7
MBI17_g35870_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 2.9e-48 196.4 132 73.5
MCO16G195 Micromonas commoda HOM05D006923 ORTHO05D008697 1.4e-42 177.6 239 40.2
Cre08.g382300 Chlamydomonas reinhardtii HOM05D006923 ORTHO05D008697 3.4e-41 172.9 230 37.4
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 2.1e-35 153.7 244 36.5
Sed0022420 Sechium edule HOM05D006923 ORTHO05D008697 1.9e-31 140.6 224 41.5
PSO832G3782 Papaver somniferum HOM05D006923 ORTHO05D008697 5.4e-31 139.0 89 73.0
AagrBONN_evm.TU.Sc2ySwM_117.4092 Anthoceros agrestis HOM05D006923 ORTHO05D008697 9.3e-23 111.7 121 49.6
SEGI_22816 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 2.5e-20 103.6 84 56.0
MBI17_g35869_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 1.7e-16 90.9 59 71.2
VMungo1215G3051 Vigna mungo HOM05D006923 ORTHO05D008697 2.7e-14 83.6 45 84.4
Hma1.2p1_0289F.1_g114510 Hydrangea macrophylla HOM05D006923 ORTHO05D008697 1.8e-13 80.9 61 62.3
CiPaw.05G144000 Carya illinoinensis HOM05D006923 ORTHO05D008697 1.5e-12 77.8 103 46.6
A07p27760 Brassica napus HOM05D006923 ORTHO05D024228 3.1e-10 70.1 75 57.3
BraA07t30415Z Brassica rapa HOM05D006923 ORTHO05D024228 3.1e-10 70.1 75 57.3
BraA08t33759Z Brassica rapa HOM05D020796 ORTHO05D024228 9.0e-10 68.6 75 56.0
SEGI_22360 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 4.5e-09 66.2 53 54.7
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 1.1e-07 61.6 51 54.9
C03p46150 Brassica napus HOM05D024156 ORTHO05D027668 6.0e-06 55.8 57 56.1


User provided reference genes

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