Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 2.5e-293 1011.5 563 100.0
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 9.2e-264 913.3 567 92.1
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 3.8e-241 838.2 569 86.3
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 4.4e-234 814.7 581 83.3
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 7.3e-229 797.3 579 81.9
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 7.2e-200 701.0 558 72.2
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 1.7e-196 689.9 580 72.1
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.6e-194 682.6 541 72.1
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 1.2e-186 657.1 574 70.9
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 2.9e-185 652.5 602 66.9
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 3.5e-178 629.0 599 65.6
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 3.0e-174 615.9 597 65.2
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 3.5e-170 602.4 598 65.6
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 7.2e-168 594.7 613 64.6
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 4.7e-167 592.0 488 73.0
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 1.8e-163 580.1 608 62.2
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 2.4e-163 579.7 594 63.0
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 2.7e-162 576.2 602 64.1
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 5.0e-161 572.0 544 67.3
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 5.0e-161 572.0 601 62.7
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.1e-160 570.9 607 62.3
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 1.1e-160 570.9 603 63.3
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 1.9e-160 570.1 406 83.0
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 2.1e-159 566.6 597 62.5
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 6.1e-159 565.1 535 64.7
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 6.8e-158 561.6 590 62.7
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 2.0e-157 560.1 618 58.7
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 3.4e-157 559.3 604 62.3
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 3.2e-155 552.7 608 61.3
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 5.4e-155 552.0 598 61.2
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 3.9e-153 545.8 582 61.2
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 5.0e-153 545.4 585 61.0
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 6.6e-153 545.0 589 59.1
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 1.9e-152 543.5 601 59.6
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 3.3e-152 542.7 561 61.9
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 7.3e-152 541.6 578 62.6
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.0e-150 537.7 554 63.5
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 1.4e-150 537.3 584 61.5
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 1.4e-150 537.3 587 61.7
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 2.3e-150 536.6 627 56.0
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 5.8e-149 531.9 581 60.9
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 1.1e-147 527.7 597 59.5
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 1.1e-147 527.7 560 63.2
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 5.4e-147 525.4 601 55.6
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 2.7e-146 523.1 566 59.0
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 3.5e-146 522.7 577 60.5
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 2.5e-144 516.5 571 59.7
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 2.5e-144 516.5 566 59.7
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 5.6e-144 515.4 601 58.9
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 9.5e-144 514.6 558 61.6
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 2.8e-143 513.1 558 61.5
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 1.8e-142 510.4 548 59.3
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 1.8e-142 510.4 705 52.3
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 6.8e-142 508.4 595 57.6
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.5e-141 507.3 613 57.7
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 7.5e-141 505.0 524 61.5
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 1.7e-140 503.8 599 57.9
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 3.7e-140 502.7 618 55.5
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 4.9e-140 502.3 576 54.7
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 6.4e-140 501.9 561 61.3
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 1.9e-139 500.4 596 58.1
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 7.8e-138 495.0 614 53.6
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 8.6e-137 491.5 567 57.5
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 3.3e-136 489.6 604 54.6
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 2.3e-134 483.4 484 64.5
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 2.3e-134 483.4 546 59.5
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 2.2e-132 476.9 458 64.4
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 7.1e-131 471.9 589 56.0
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 1.2e-130 471.1 528 60.2
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 6.0e-130 468.8 603 56.1
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 7.8e-130 468.4 423 69.5
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 6.6e-129 465.3 577 56.0
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 8.6e-129 464.9 523 60.0
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 4.3e-128 462.6 590 55.6
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 9.6e-128 461.5 583 52.1
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 1.2e-127 461.1 580 51.9
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 8.1e-127 458.4 485 63.7
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 7.6e-125 451.8 565 53.8
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 9.9e-125 451.4 606 55.6
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 3.8e-124 449.5 521 58.7
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 2.1e-122 443.7 483 61.7
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 1.7e-121 440.7 608 54.1
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 1.7e-121 440.7 581 51.6
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 2.1e-119 433.7 464 61.9
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 3.6e-119 433.0 562 50.9
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 3.6e-119 433.0 588 53.6
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 1.8e-118 430.6 580 51.2
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 5.3e-118 429.1 601 53.4
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 1.1e-115 421.4 472 55.7
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 6.6e-113 412.1 403 61.0
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 8.7e-113 411.8 593 51.8
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 2.9e-108 396.7 579 53.5
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 1.9e-107 394.0 568 52.1
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 1.2e-106 391.3 572 51.0
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 1.6e-106 391.0 579 51.5
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 7.9e-106 388.7 585 52.3
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 1.0e-105 388.3 572 50.9
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 1.0e-105 388.3 572 50.9
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.0e-105 388.3 430 60.9
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 6.7e-105 385.6 537 54.4
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 1.9e-104 384.0 583 50.6
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 3.0e-89 333.6 250 75.2
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 4.1e-86 323.2 350 64.9
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 7.4e-80 302.4 479 51.4
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 1.4e-78 298.1 274 62.0
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 4.7e-74 283.1 249 65.1
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 5.3e-70 269.6 252 60.7
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 6.5e-60 236.1 267 53.2
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 2.1e-58 231.1 265 51.7
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 8.0e-58 229.2 252 52.0
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 8.0e-58 229.2 251 53.8
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 4.0e-57 226.9 251 53.4
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 5.9e-53 213.0 335 43.0
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 2.9e-52 210.7 266 49.2
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 1.6e-45 188.3 171 62.6
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 2.5e-43 181.0 591 33.3
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 2.8e-42 177.6 251 47.0
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 1.1e-38 165.6 190 50.0
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 8.6e-36 156.0 276 39.1
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 1.1e-35 155.6 172 57.6
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 8.9e-33 146.0 234 41.9
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 2.6e-32 144.4 248 39.1
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 3.7e-31 140.6 220 46.8
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 1.6e-29 135.2 105 68.6
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 1.9e-27 128.3 156 47.4
Nitab4.5_0005739g0060 Nicotiana tabacum HOM05D004479 ORTHO05D029161 1.6e-26 125.2 95 74.7
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 6.2e-26 123.2 180 50.0
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 5.8e-24 116.7 138 55.1
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 1.7e-23 115.2 194 42.8
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 6.0e-21 106.7 69 81.2
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 5.1e-20 103.6 99 59.6
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 2.5e-19 101.3 60 88.3
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 2.8e-18 97.8 123 48.0
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 2.6e-16 91.3 152 40.1
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 3.4e-16 90.9 133 44.4
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 7.6e-16 89.7 103 56.3
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 2.4e-14 84.7 137 47.4
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 3.2e-14 84.3 133 41.4
Hma1.2p1_0370F.1_g138010 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 6.0e-13 80.1 77 64.9
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 3.0e-12 77.8 179 39.7
SHI34972 Sapria himalayana HOM05D004479 ORTHO05D005597 2.5e-11 74.7 121 39.7
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 3.3e-11 74.3 56 66.1
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 1.2e-10 72.4 116 42.2
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 6.2e-10 70.1 53 69.8
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 6.2e-10 70.1 53 69.8
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 6.2e-10 70.1 53 69.8
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 6.2e-10 70.1 46 71.7
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.1e-09 69.3 69 50.7
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 1.1e-09 69.3 74 54.1
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 1.4e-09 68.9 86 51.2
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 4.0e-09 67.4 41 78.0
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 4.0e-09 67.4 115 41.7
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 8.9e-09 66.2 127 38.6
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 3.4e-08 64.3 69 53.6
QL08p038027 Quercus lobata HOM05D004479 ORTHO05D337893 2.9e-07 61.2 91 45.1
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 4.9e-07 60.5 54 61.1
SHI13126 Sapria himalayana HOM05D000105 ORTHO05D000023 6.4e-07 60.1 60 56.7
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 1.1e-06 59.3 40 80.0
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 1.1e-06 59.3 40 80.0
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 1.1e-06 59.3 40 80.0
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 5.4e-06 57.0 59 47.5
SHI35501 Sapria himalayana HOM05D004479 ORTHO05D005597 5.4e-06 57.0 103 37.9
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 7.1e-06 56.6 45 68.9


User provided reference genes

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