Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 2.7e-70 268.5 127 100.0
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 3.3e-68 261.5 127 97.6
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 1.7e-56 222.6 128 90.6
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 1.5e-36 156.4 126 67.5
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 4.5e-33 144.8 127 63.0
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 5.5e-23 111.3 102 56.9
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 1.0e-21 107.1 130 48.5
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 5.1e-21 104.8 77 66.2
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 6.7e-21 104.4 77 64.9
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 8.7e-21 104.0 114 48.2
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 1.9e-20 102.8 121 49.6
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 1.6e-19 99.8 89 57.3
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 3.7e-19 98.6 114 50.0
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 6.3e-19 97.8 74 66.2
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 1.1e-18 97.1 70 67.1
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 7.6e-17 90.9 75 65.3
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 6.5e-16 87.8 126 41.3
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 1.4e-15 86.7 91 51.6
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 1.4e-15 86.7 91 51.6
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 1.9e-15 86.3 115 51.3
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 9.4e-15 84.0 76 57.9
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.2e-14 83.6 115 52.2
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 1.6e-14 83.2 92 50.0
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 1.6e-14 83.2 116 42.2
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 3.6e-14 82.0 112 40.2
SGA_v2.0_scaffold71G23919 Striga asiatica HOM05D005200 ORTHO05D005760 4.6e-14 81.6 101 47.5
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 1.0e-13 80.5 82 46.3
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 1.0e-13 80.5 72 56.9
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 1.4e-13 80.1 71 53.5
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 1.8e-13 79.7 114 45.6
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 2.3e-13 79.3 123 43.9
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 2.3e-13 79.3 106 43.4
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 3.9e-13 78.6 85 49.4
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 6.7e-13 77.8 62 58.1
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 8.8e-13 77.4 115 43.5
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 8.8e-13 77.4 82 46.3
HanXRQChr12g0360121 Helianthus annuus HOM05D005200 ORTHO05D005760 8.8e-13 77.4 72 55.6
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 8.8e-13 77.4 81 45.7
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 8.8e-13 77.4 71 56.3
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 8.8e-13 77.4 82 47.6
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 8.8e-13 77.4 72 54.2
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 1.1e-12 77.0 78 47.4
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.1e-12 77.0 82 46.3
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.1e-12 77.0 78 47.4
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.1e-12 77.0 78 47.4
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.1e-12 77.0 82 46.3
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.1e-12 77.0 104 42.3
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.5e-12 76.6 104 41.3
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 1.5e-12 76.6 71 56.3
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 1.9e-12 76.3 74 52.7
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 3.3e-12 75.5 101 45.5
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 3.3e-12 75.5 71 49.3
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.3e-12 75.5 71 52.1
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 4.3e-12 75.1 71 59.2
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 5.7e-12 74.7 84 47.6
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 5.7e-12 74.7 76 51.3
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 7.4e-12 74.3 104 42.3
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 7.4e-12 74.3 58 60.3
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 7.4e-12 74.3 66 53.0
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 9.7e-12 73.9 96 41.7
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 9.7e-12 73.9 81 45.7
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 1.3e-11 73.6 74 47.3
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 1.3e-11 73.6 77 50.6
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 1.3e-11 73.6 84 46.4
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 1.7e-11 73.2 92 40.2
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.7e-11 73.2 90 48.9
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 1.7e-11 73.2 58 60.3
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 2.2e-11 72.8 81 50.6
Lsat_1_v5_gn_5_137940 Lactuca sativa HOM05D005200 ORTHO05D005760 2.2e-11 72.8 64 56.2
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 2.2e-11 72.8 84 46.4
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 3.7e-11 72.0 69 55.1
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 4.8e-11 71.6 67 55.2
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 4.8e-11 71.6 71 50.7
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 4.8e-11 71.6 69 55.1
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 6.3e-11 71.2 67 55.2
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 8.2e-11 70.9 81 46.9
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 8.2e-11 70.9 74 51.4
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 8.2e-11 70.9 81 50.6
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.1e-10 70.5 82 45.1
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 1.1e-10 70.5 70 57.1
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.8e-10 69.7 87 43.7
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 2.4e-10 69.3 67 55.2
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 3.1e-10 68.9 71 49.3
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.1e-10 68.9 90 41.1
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 3.1e-10 68.9 90 41.1
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 3.1e-10 68.9 110 40.9
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 4.1e-10 68.6 59 55.9
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 4.1e-10 68.6 61 54.1
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 4.1e-10 68.6 65 50.8
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 6.9e-10 67.8 61 52.5
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 9.1e-10 67.4 56 57.1
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 1.2e-09 67.0 60 51.7
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 1.2e-09 67.0 102 38.2
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 1.2e-09 67.0 65 50.8
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 1.2e-09 67.0 86 39.5
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 1.2e-09 67.0 97 40.2
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 1.5e-09 66.6 85 42.4
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 1.5e-09 66.6 60 51.7
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 1.5e-09 66.6 60 51.7
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 1.5e-09 66.6 53 56.6
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 1.5e-09 66.6 67 50.7
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 2.0e-09 66.2 70 48.6
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 2.6e-09 65.9 65 49.2
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 2.6e-09 65.9 55 58.2
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 3.4e-09 65.5 80 43.8
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.4e-09 65.5 71 46.5
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 4.5e-09 65.1 60 50.0
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 7.7e-09 64.3 59 52.5
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 1.0e-08 63.9 87 39.1
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 1.0e-08 63.9 58 51.7
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 1.0e-08 63.9 58 53.4
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 1.0e-08 63.9 58 53.4
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 1.0e-08 63.9 58 53.4
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 1.0e-08 63.9 58 53.4
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 1.3e-08 63.5 78 43.6
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 1.7e-08 63.2 57 45.6
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 2.2e-08 62.8 79 40.5
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 2.2e-08 62.8 45 64.4
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 2.9e-08 62.4 62 51.6
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 3.8e-08 62.0 87 40.2
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 3.8e-08 62.0 60 45.0
Zm00001eb278460 Zea mays HOM05D005200 ORTHO05D005760 5.0e-08 61.6 49 53.1
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 6.5e-08 61.2 60 48.3
BraA01t03983Z Brassica rapa HOM05D005200 ORTHO05D005760 6.5e-08 61.2 60 48.3
C01p50260 Brassica napus HOM05D005200 ORTHO05D005760 8.5e-08 60.8 55 47.3
BolC1t04981H Brassica oleracea HOM05D005200 ORTHO05D005760 8.5e-08 60.8 55 47.3
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 1.1e-07 60.5 31 74.2
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 1.1e-07 60.5 60 43.3
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 1.9e-07 59.7 84 40.5
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 3.2e-07 58.9 42 57.1
ClCG07G014310 Citrullus lanatus HOM05D005200 ORTHO05D005760 7.2e-07 57.8 74 47.3
AagrBONN_evm.TU.Sc2ySwM_228.2768 Anthoceros agrestis HOM05D005200 ORTHO05D005760 9.4e-07 57.4 74 45.9
Pp3c19_6810 Physcomitrium patens HOM05D023101 ORTHO05D005760 1.6e-06 56.6 76 38.2
Medtr8g023100 Medicago truncatula HOM05D005200 ORTHO05D005760 2.1e-06 56.2 116 31.9
Ah.08g217360 Amaranthus hybridus HOM05D005200 ORTHO05D005760 2.7e-06 55.8 44 63.6
CsaV3_3G030990 Cucumis sativus L. HOM05D005200 ORTHO05D005760 2.7e-06 55.8 42 57.1
Os10g0390701 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 4.7e-06 55.1 39 61.5
Psat4g165560 Pisum sativum HOM05D005200 ORTHO05D005760 4.7e-06 55.1 49 53.1
Pp3c15_15470 Physcomitrium patens HOM05D023101 ORTHO05D005760 6.1e-06 54.7 31 67.7
Sed0016877 Sechium edule HOM05D005200 ORTHO05D005760 7.9e-06 54.3 83 41.0


User provided reference genes

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