Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g041090 Solanum pennellii HOM05D006176 ORTHO05D007346 8.4e-61 236.9 123 100.0
PGSC0003DMG400022907 Solanum tuberosum HOM05D006176 ORTHO05D007346 3.6e-48 194.9 128 81.2
Peaxi162Scf00038g02015 Petunia axillaris HOM05D006176 ORTHO05D007346 1.8e-26 122.9 102 62.7
PGSC0003DMG400016087 Solanum tuberosum HOM05D021761 ORTHO05D007346 5.1e-26 121.3 129 61.2
PGSC0003DMG400016086 Solanum tuberosum HOM05D021761 ORTHO05D007346 8.7e-26 120.6 128 60.9
Nitab4.5_0010678g0020 Nicotiana tabacum HOM05D006176 ORTHO05D007346 4.1e-23 111.7 115 52.2
Nitab4.5_0000255g0320 Nicotiana tabacum HOM05D006176 ORTHO05D007346 9.0e-23 110.5 112 52.7
Solyc03g122330.1 Solanum lycopersicum HOM05D021761 ORTHO05D037655 1.3e-21 106.7 124 58.1
Sopen06g022380 Solanum pennellii HOM05D006176 ORTHO05D007346 3.6e-19 98.6 102 52.9
Solyc03g122320.1 Solanum lycopersicum HOM05D021761 ORTHO05D037655 4.6e-19 98.2 125 56.8
Sopen03g041080 Solanum pennellii HOM05D021761 ORTHO05D037655 4.6e-19 98.2 125 56.8
Atru.chr1.4021 Acer truncatum HOM05D006176 ORTHO05D007346 1.1e-17 93.6 106 43.4
PGSC0003DMG400004890 Solanum tuberosum HOM05D006176 ORTHO05D007346 1.5e-17 93.2 100 50.0
PGSC0003DMG400016088 Solanum tuberosum HOM05D021761 ORTHO05D007346 5.7e-17 91.3 101 59.4
Solyc06g062930.1 Solanum lycopersicum HOM05D006176 ORTHO05D007346 2.8e-16 89.0 99 48.5
Atru.chr1.4004 Acer truncatum HOM05D006176 ORTHO05D007346 3.7e-16 88.6 106 41.5
CiPaw.01G217500 Carya illinoinensis HOM05D006176 ORTHO05D007346 3.7e-16 88.6 93 46.2
Haze_16045 Corylus avellana HOM05D006176 ORTHO05D007346 3.7e-16 88.6 121 40.5
Manes.04G145900 Manihot esculenta HOM05D006176 ORTHO05D007346 3.7e-16 88.6 120 40.8
Cfa003523 Carpinus fangiana HOM05D006176 ORTHO05D007346 8.2e-16 87.4 98 43.9
Actinidia26022 Actinidia chinensis HOM05D006176 ORTHO05D007346 3.1e-15 85.5 96 46.9
Dinv20423 Davidia involucrata HOM05D006176 ORTHO05D007346 1.2e-14 83.6 90 47.8
Migut.I01087 Erythranthe guttata HOM05D006176 ORTHO05D007346 1.2e-14 83.6 110 43.6
Nn8g38624 Nelumbo nucifera HOM05D006176 ORTHO05D007346 2.6e-14 82.4 124 37.1
Nitab4.5_0000189g0110 Nicotiana tabacum HOM05D006176 ORTHO05D007346 1.3e-13 80.1 100 43.0
Oeu000400.1 Olea europaea HOM05D006176 ORTHO05D007346 1.3e-13 80.1 119 38.7
Dinv37860 Davidia involucrata HOM05D006176 ORTHO05D007346 2.2e-13 79.3 117 41.0
Ah.08g216920 Amaranthus hybridus HOM05D006176 ORTHO05D007346 2.9e-13 79.0 109 38.5
EL10Ac7g16423 Beta vulgaris HOM05D006176 ORTHO05D007346 2.9e-13 79.0 119 40.3
Medtr8g021025 Medicago truncatula HOM05D006176 ORTHO05D007346 2.9e-13 79.0 122 40.2
Oeu043644.1 Olea europaea HOM05D006176 ORTHO05D007346 2.9e-13 79.0 107 41.1
Potri.003G067200 Populus trichocarpa HOM05D006176 ORTHO05D007346 2.9e-13 79.0 92 44.6
TPR.G16753 Trifolium pratense HOM05D006176 ORTHO05D007346 2.9e-13 79.0 102 45.1
Gohir.A05G139800 Gossypium hirsutum HOM05D006176 ORTHO05D007346 3.8e-13 78.6 110 39.1
CANSAT56G3952 Cannabis sativa HOM05D006176 ORTHO05D007346 6.5e-13 77.8 89 44.9
Gohir.D05G142000 Gossypium hirsutum HOM05D006176 ORTHO05D007346 6.5e-13 77.8 110 39.1
Gorai.009G146100 Gossypium raimondii HOM05D006176 ORTHO05D007346 6.5e-13 77.8 110 39.1
Duzib192G0929 Durio zibethinus HOM05D006176 ORTHO05D007346 8.5e-13 77.4 101 39.6
Migut.D00934 Erythranthe guttata HOM05D006176 ORTHO05D007346 8.5e-13 77.4 108 47.2
Aqoxy2G03952 Aquilegia oxysepala HOM05D006176 ORTHO05D007346 1.1e-12 77.0 99 38.4
Potri.001G167600 Populus trichocarpa HOM05D006176 ORTHO05D007346 1.1e-12 77.0 93 47.3
Ca_23393_v3 Cicer arietinum L. HOM05D006176 ORTHO05D007346 1.4e-12 76.6 102 44.1
FAN09G3283 Fragaria x ananassa HOM05D006176 ORTHO05D007346 1.4e-12 76.6 99 42.4
Glyma.07G040000 Glycine max HOM05D006176 ORTHO05D007346 1.4e-12 76.6 118 44.1
RcHm_v2.0_Chr2g0146001 Rosa chinensis HOM05D006176 ORTHO05D007346 1.4e-12 76.6 113 41.6
FAN05G0172 Fragaria x ananassa HOM05D006176 ORTHO05D007346 2.5e-12 75.9 118 39.8
Lj3g0022886 Lotus japonicus HOM05D006176 ORTHO05D007346 2.5e-12 75.9 101 46.5
COL.COLO4_30741 Corchorus olitorius HOM05D006176 ORTHO05D007346 4.2e-12 75.1 126 33.3
FvH4_6g34980 Fragaria vesca HOM05D006176 ORTHO05D007346 4.2e-12 75.1 118 39.8
FAN14G1476 Fragaria x ananassa HOM05D006176 ORTHO05D007346 4.2e-12 75.1 118 39.8
Phvul.010G128700 Phaseolus vulgaris HOM05D006176 ORTHO05D007346 4.2e-12 75.1 103 45.6
Thecc.06G122200 Theobroma cacao HOM05D006176 ORTHO05D007346 5.5e-12 74.7 111 33.3
TWI75G0921 Tripterygium wilfordii HOM05D006176 ORTHO05D007346 5.5e-12 74.7 91 42.9
Lalb_Chr04g0261121 Lupinus albus HOM05D006176 ORTHO05D007346 9.4e-12 73.9 109 44.0
SGA_v2.0_scaffold122G33347 Striga asiatica HOM05D006176 ORTHO05D007346 9.4e-12 73.9 93 41.9
PSO063G0286 Papaver somniferum HOM05D006176 ORTHO05D007346 1.6e-11 73.2 105 39.0
DCAR_022691 Daucus carota HOM05D006176 ORTHO05D007346 2.1e-11 72.8 108 38.9
MD17G1166900 Malus domestica HOM05D006176 ORTHO05D007346 2.1e-11 72.8 97 42.3
PSO421G0391 Papaver somniferum HOM05D006176 ORTHO05D007346 4.7e-11 71.6 105 38.1
Glyma.16G008800 Glycine max HOM05D006176 ORTHO05D007346 1.0e-10 70.5 114 42.1
vmacro22033 Vaccinium macrocarpon HOM05D006176 ORTHO05D007346 1.4e-10 70.1 117 36.8
Gohir.A10G054700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 1.8e-10 69.7 116 35.3
Gohir.D10G056700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 1.8e-10 69.7 116 35.3
Sc12g0010640 Simmondsia chinensis HOM05D006176 ORTHO05D007346 1.8e-10 69.7 92 37.0
MD09G1180800 Malus domestica HOM05D006176 ORTHO05D007346 2.3e-10 69.3 97 39.2
Gorai.011G060500 Gossypium raimondii HOM05D006176 ORTHO05D007346 3.9e-10 68.6 116 35.3
Nitab4.5_0005192g0040 Nicotiana tabacum HOM05D006176 ORTHO05D007346 1.5e-09 66.6 117 38.5
Lsat_1_v5_gn_4_94161 Lactuca sativa HOM05D006176 ORTHO05D007346 2.6e-09 65.9 89 39.3
MBI19_g09833_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 2.6e-09 65.9 92 37.0
Rhsim12G0210400 Rhododendron simsii HOM05D006176 ORTHO05D007346 3.3e-09 65.5 97 36.1
Lalb_Chr04g0263581 Lupinus albus HOM05D006176 ORTHO05D007346 4.4e-09 65.1 102 41.2
Prupe.3G039100 Prunus persica HOM05D006176 ORTHO05D007346 4.4e-09 65.1 99 37.4
Rhsim12G0210800 Rhododendron simsii HOM05D006176 ORTHO05D007346 4.4e-09 65.1 105 34.3
Ciclev10027265m.g Citrus clementina HOM05D006176 ORTHO05D007346 5.7e-09 64.7 70 42.9
TAR624G0214 Trochodendron aralioides HOM05D006176 ORTHO05D007346 5.7e-09 64.7 123 39.8
ClCG07G014560 Citrullus lanatus HOM05D006176 ORTHO05D007346 1.7e-08 63.2 117 35.9
MSTRG.10943 Avicennia marina HOM05D006176 ORTHO05D007346 2.2e-08 62.8 102 43.1
MBI13_g35417_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 2.2e-08 62.8 110 32.7
QL05p004031 Quercus lobata HOM05D006176 ORTHO05D007346 2.2e-08 62.8 110 36.4
SGA_v2.0_scaffold4G02067 Striga asiatica HOM05D006176 ORTHO05D007346 3.7e-08 62.0 108 36.1
Thhalv10011868m.g Eutrema salsugineum HOM05D006176 ORTHO05D007346 8.2e-08 60.8 110 34.5
Sed0000884 Sechium edule HOM05D006176 ORTHO05D007346 8.2e-08 60.8 111 34.2
PGSC0003DMG400004373 Solanum tuberosum HOM05D006176 ORTHO05D007346 8.2e-08 60.8 108 33.3
BcaB07g33263 Brassica carinata HOM05D006176 ORTHO05D007346 1.1e-07 60.5 111 36.0
CARHR044470 Cardamine hirsuta HOM05D006176 ORTHO05D007346 3.1e-07 58.9 111 34.2
Cpa.g.c40357 Carica papaya HOM05D006176 ORTHO05D007346 3.1e-07 58.9 110 31.8
BcaC08g43592 Brassica carinata HOM05D006176 ORTHO05D007346 4.1e-07 58.5 110 34.5
C06p09900 Brassica napus HOM05D006176 ORTHO05D007346 4.1e-07 58.5 110 34.5
BolC6t36062H Brassica oleracea HOM05D006176 ORTHO05D007346 4.1e-07 58.5 110 34.5
Sabra03G0039100 Salix brachista HOM05D006176 ORTHO05D007346 4.1e-07 58.5 103 33.0
C06p15630 Brassica napus HOM05D006176 ORTHO05D007346 5.3e-07 58.2 99 34.3
BraA06t23268Z Brassica rapa HOM05D006176 ORTHO05D007346 5.3e-07 58.2 110 33.6
Carub.0001s4336 Capsella rubella HOM05D006176 ORTHO05D007346 5.3e-07 58.2 110 34.5
PGR102G2654 Punica granatum HOM05D006176 ORTHO05D007346 5.3e-07 58.2 102 35.3
A06p00540 Brassica napus HOM05D006176 ORTHO05D007346 9.1e-07 57.4 110 33.6
A08p01210 Brassica napus HOM05D006176 ORTHO05D007346 1.2e-06 57.0 112 35.7
BraA08t32172Z Brassica rapa HOM05D006176 ORTHO05D007346 1.2e-06 57.0 112 35.7
Psat4g168640 Pisum sativum HOM05D006176 ORTHO05D007346 2.0e-06 56.2 61 41.0
BcaB04g17025 Brassica carinata HOM05D006176 ORTHO05D007346 2.6e-06 55.8 114 39.5
BcaC01g01436 Brassica carinata HOM05D006176 ORTHO05D007346 2.6e-06 55.8 110 33.6
C03p92010 Brassica napus HOM05D006176 ORTHO05D007346 2.6e-06 55.8 110 33.6
BolC3t21519H Brassica oleracea HOM05D006176 ORTHO05D007346 2.6e-06 55.8 110 33.6
AT1G54120 Arabidopsis thaliana HOM05D006176 ORTHO05D007346 3.4e-06 55.5 98 34.7
Sp1g40570 Schrenkiella parvula HOM05D006176 ORTHO05D007346 3.4e-06 55.5 113 34.5
Thhalv10021772m.g Eutrema salsugineum HOM05D006176 ORTHO05D007346 7.7e-06 54.3 100 35.0


User provided reference genes

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