Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 0.0e+00 1095.5 562 100.0
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 2.2e-305 1051.6 562 96.6
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 7.7e-186 654.4 417 84.4
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.1e-179 632.5 593 61.7
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.9e-176 623.2 559 64.9
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 2.4e-118 430.3 679 41.4
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 1.3e-116 424.5 685 41.3
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 2.2e-116 423.7 314 73.2
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 2.5e-112 410.2 625 41.9
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 9.9e-109 398.3 683 38.7
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 5.1e-105 386.0 672 36.9
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 1.9e-104 384.0 652 39.6
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 6.2e-103 379.0 690 38.1
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 1.4e-99 367.9 717 36.3
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 1.6e-98 364.4 644 36.3
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 3.0e-97 360.1 719 36.7
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 5.1e-97 359.4 670 36.7
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 1.3e-92 344.7 736 33.8
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 2.2e-92 344.0 650 34.5
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 1.1e-91 341.7 671 35.3
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 1.4e-91 341.3 663 36.3
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 1.4e-91 341.3 643 36.4
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 5.5e-91 339.3 652 35.6
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 7.1e-91 339.0 627 37.6
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.8e-89 334.3 623 36.1
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 1.8e-89 334.3 663 33.6
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 2.3e-89 334.0 623 38.5
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 6.7e-89 332.4 640 36.7
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.3e-87 328.2 754 33.2
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 1.6e-87 327.8 637 36.4
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 2.1e-87 327.4 759 34.0
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 3.1e-86 323.6 652 35.6
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 3.1e-86 323.6 621 36.7
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 6.9e-86 322.4 609 36.8
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 9.0e-86 322.0 755 33.4
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 3.4e-85 320.1 671 34.6
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 5.9e-85 319.3 676 33.0
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 8.4e-84 315.5 676 32.8
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 3.2e-83 313.5 663 34.5
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 5.5e-83 312.8 643 33.1
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 7.9e-82 308.9 655 35.1
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 1.3e-81 308.1 702 35.6
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 5.1e-81 306.2 683 31.5
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 2.5e-80 303.9 654 33.0
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 6.3e-79 299.3 740 32.2
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 2.6e-77 293.9 748 30.5
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 4.5e-77 293.1 616 34.1
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 7.7e-77 292.4 795 29.8
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 3.8e-76 290.0 676 32.4
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 5.0e-76 289.7 617 34.2
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 1.9e-75 287.7 642 32.4
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 2.5e-75 287.3 740 31.6
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 9.4e-75 285.4 647 34.2
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 6.1e-74 282.7 699 31.6
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 1.4e-73 281.6 780 28.7
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.0e-73 280.4 727 31.8
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 5.1e-73 279.6 836 29.3
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 4.3e-72 276.6 323 48.9
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 9.7e-72 275.4 718 32.6
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 1.3e-71 275.0 312 48.4
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.7e-71 273.5 742 31.9
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 2.4e-70 270.8 693 30.7
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 6.9e-70 269.2 343 44.3
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 2.0e-69 267.7 609 32.3
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 3.4e-69 266.9 662 33.5
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 5.9e-69 266.2 330 42.7
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 2.2e-68 264.2 844 28.0
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 2.9e-68 263.8 552 33.5
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 3.8e-68 263.5 784 30.6
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 8.5e-68 262.3 763 29.6
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 3.6e-66 256.9 714 30.1
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 3.6e-66 256.9 360 40.6
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 1.4e-65 255.0 324 44.8
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 1.8e-65 254.6 635 30.7
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.3e-65 254.2 315 47.9
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 2.3e-65 254.2 781 28.8
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.5e-64 251.5 315 47.6
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 7.4e-64 249.2 788 28.2
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 1.3e-63 248.4 632 31.5
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 1.7e-63 248.1 640 31.2
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 2.2e-63 247.7 300 47.0
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 2.2e-63 247.7 651 30.7
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 1.1e-62 245.4 585 30.6
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 1.8e-62 244.6 714 27.6
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 2.4e-62 244.2 551 33.4
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 9.1e-62 242.3 618 31.1
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 9.1e-62 242.3 316 44.3
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 7.7e-61 239.2 631 30.9
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 3.2e-59 233.8 632 30.4
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.2e-59 233.8 324 43.5
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 3.2e-59 233.8 316 41.5
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 5.5e-59 233.0 633 30.5
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.2e-58 231.9 710 28.5
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 4.7e-58 229.9 625 30.1
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 4.7e-58 229.9 258 50.0
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 1.4e-57 228.4 343 40.8
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 6.7e-57 226.1 319 40.8
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 8.8e-57 225.7 659 29.1
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.5e-56 224.9 441 36.5
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 4.4e-56 223.4 303 43.9
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.7e-56 223.0 273 47.3
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 9.7e-56 222.2 334 43.1
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 2.2e-55 221.1 309 44.3
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.1e-54 218.8 704 29.4
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 4.1e-54 216.9 397 34.5
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 2.0e-53 214.5 571 29.6
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 2.7e-53 214.2 340 38.8
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 5.9e-53 213.0 446 35.9
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 3.8e-52 210.3 322 38.5
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 3.2e-51 207.2 312 38.5
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 3.2e-51 207.2 597 30.0
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 4.2e-51 206.8 273 44.3
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 9.4e-51 205.7 298 42.3
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 1.3e-47 195.3 329 42.2
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 2.8e-47 194.1 567 28.9
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 2.5e-43 181.0 506 30.2
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 9.5e-43 179.1 281 38.1
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 3.6e-42 177.2 220 44.1
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.9e-39 166.8 221 44.3
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 1.4e-38 165.2 647 26.1
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 8.6e-36 156.0 398 30.7
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 2.1e-34 151.4 288 35.4
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 3.2e-30 137.5 190 42.6
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 9.2e-30 136.0 187 43.9
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 9.2e-30 136.0 187 43.9
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 4.3e-27 127.1 296 33.4
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 2.1e-26 124.8 315 30.8
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 8.0e-26 122.9 173 39.9
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 1.2e-24 119.0 165 40.6
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 7.5e-24 116.3 124 51.6
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 6.0e-21 106.7 238 33.2
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 8.6e-20 102.8 562 23.7
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 1.6e-18 98.6 126 35.7
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.1e-18 98.2 112 44.6
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 3.6e-18 97.4 152 36.2
Solyc05g150103.1 Solanum lycopersicum HOM05D045379 ORTHO05D004606 4.7e-18 97.1 53 92.5
Solyc09g064620.3 Solanum lycopersicum HOM05D045379 ORTHO05D004606 8.9e-17 92.8 49 93.9
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 9.8e-16 89.4 118 38.1
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 1.3e-15 89.0 168 35.7
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 3.7e-15 87.4 168 33.3
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 3.7e-15 87.4 166 33.7
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 4.9e-15 87.0 226 34.5
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 8.3e-15 86.3 138 36.2
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 8.3e-15 86.3 106 46.2
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 8.3e-15 86.3 401 24.4
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 1.4e-14 85.5 171 33.3
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 9.2e-14 82.8 166 33.1
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 3.5e-13 80.9 189 32.3
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 3.5e-13 80.9 121 43.0
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 3.5e-13 80.9 116 38.8
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.1e-12 77.0 80 45.0
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 1.5e-11 75.5 146 36.3
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 3.4e-08 64.3 306 25.2
Cc03_g11430 Coffea canephora HOM05D004076 ORTHO05D004606 2.9e-07 61.2 113 36.3
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 1.1e-06 59.3 121 33.1


User provided reference genes

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