Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 0.0e+00 2209.9 1141 100.0
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 0.0e+00 2155.6 1141 97.5
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 0.0e+00 1730.7 1019 86.8
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 0.0e+00 1549.3 1125 73.6
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 0.0e+00 1458.0 1122 70.8
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 0.0e+00 1392.1 1047 70.5
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1320.8 1153 59.7
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1224.5 1136 57.4
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1211.8 1152 55.9
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 0.0e+00 1206.8 1152 54.9
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 0.0e+00 1179.5 1145 56.1
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1177.5 1151 54.6
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 0.0e+00 1176.0 1215 52.4
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1176.0 1144 55.0
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1169.8 1153 54.6
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 0.0e+00 1169.8 1149 55.0
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1153.3 1151 52.9
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1144.0 1160 53.0
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1143.3 1136 53.8
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1141.3 1146 53.2
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1139.0 1224 51.6
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1132.1 1148 53.7
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1124.0 1143 53.5
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1119.8 1148 52.0
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1119.0 1145 52.8
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1115.5 1143 52.9
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1109.0 1155 51.5
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1108.6 1155 52.6
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1106.7 1155 51.5
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1099.0 1159 51.7
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1083.2 1143 51.4
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 0.0e+00 1079.3 1141 51.8
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 1076.2 1135 51.5
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 3.4e-310 1068.5 1158 50.4
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 1.7e-309 1066.2 1148 51.1
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 2.2e-309 1065.8 1143 49.9
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 2.9e-309 1065.4 1154 49.6
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 2.1e-307 1059.3 1153 50.0
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 3.6e-307 1058.5 1148 51.0
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 1.8e-306 1056.2 1161 50.1
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 1.7e-304 1049.7 1150 49.3
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 5.4e-303 1044.6 1149 49.2
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 1.3e-301 1040.0 1143 49.9
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 3.8e-301 1038.5 1136 49.2
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 1.5e-300 1036.6 1151 49.9
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 1.0e-298 1030.4 1143 49.3
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 4.0e-298 1028.5 1149 49.0
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 3.4e-297 1025.4 1131 48.5
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 8.3e-296 1020.8 1146 49.2
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 5.4e-295 1018.1 1113 50.8
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 7.0e-295 1017.7 1155 48.1
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 1.6e-294 1016.5 1074 52.2
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 3.8e-293 1011.9 1143 49.0
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 3.6e-291 1005.4 1094 49.9
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 3.6e-291 1005.4 1006 52.9
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 4.0e-290 1001.9 1136 49.2
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 1.2e-289 1000.3 1140 47.7
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 2.6e-289 999.2 1137 47.3
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 1.1e-287 993.8 1139 47.7
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 4.6e-286 988.4 1144 47.9
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 1.9e-284 983.0 1233 45.3
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 4.3e-284 981.9 1132 47.7
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 4.3e-284 981.9 1120 48.0
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 1.8e-282 976.5 1145 47.3
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 1.5e-281 973.4 1109 48.5
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 9.8e-281 970.7 1151 46.7
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 8.3e-280 967.6 1142 47.8
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 4.7e-275 951.8 1150 47.1
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 5.8e-265 918.3 1061 48.0
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.0e-261 907.5 1147 45.1
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 1.7e-261 906.7 1135 44.9
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 8.6e-261 904.4 1148 43.8
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 2.5e-260 902.9 1150 44.3
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 5.6e-260 901.7 1148 43.6
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 9.6e-260 901.0 1155 43.2
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 1.6e-259 900.2 1096 45.7
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 3.6e-259 899.0 1139 43.6
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 3.1e-258 896.0 1140 43.7
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 8.9e-258 894.4 1140 43.6
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 1.2e-257 894.0 1143 43.1
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 1.2e-257 894.0 1148 43.6
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.0e-257 893.3 1143 43.4
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 1.7e-253 880.2 1136 42.7
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 8.1e-251 871.3 1166 43.2
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 2.1e-246 856.7 1090 46.1
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 1.0e-245 854.4 1140 45.3
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 3.9e-245 852.4 1138 42.4
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 3.4e-241 839.3 1144 40.6
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 9.9e-241 837.8 1144 42.5
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.9e-240 836.3 1047 46.4
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 2.1e-238 830.1 1066 45.4
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 2.0e-233 813.5 1147 42.1
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.3e-221 773.5 947 45.7
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 4.2e-215 752.7 928 46.4
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 3.1e-165 587.0 1053 37.0
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 7.3e-143 512.7 729 41.8
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 2.4e-141 507.7 1178 31.7
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 1.5e-135 488.4 647 43.6
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.5e-127 461.1 456 53.7
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 9.9e-124 449.1 1185 29.3
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 2.7e-113 414.5 1121 29.3
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.8e-112 411.8 437 50.1
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 8.7e-112 409.5 524 42.9
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 7.9e-105 386.3 335 57.0
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 1.5e-100 372.1 515 41.2
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 2.2e-94 351.7 435 46.2
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.1e-90 339.3 448 42.6
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 6.1e-81 307.0 223 70.0
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 1.2e-76 292.7 1275 24.5
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 3.5e-68 264.6 223 58.7
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 1.3e-59 236.1 155 71.0
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.0e-59 234.2 191 61.8
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 4.4e-55 221.1 308 45.1
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 7.0e-53 213.8 247 47.4
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 6.6e-51 207.2 326 38.3
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 4.7e-49 201.1 180 55.6
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 6.6e-43 180.6 234 44.9
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 1.5e-39 169.5 184 48.4
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 4.4e-39 167.9 159 50.9
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 3.1e-32 145.2 202 40.1
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 8.9e-32 143.7 113 66.4
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 1.2e-31 143.3 132 54.5
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 8.7e-27 127.1 152 46.1
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 5.6e-26 124.4 119 51.3
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 6.2e-25 120.9 147 46.3
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 6.2e-25 120.9 147 46.3
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 6.2e-25 120.9 91 72.5
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 6.2e-25 120.9 91 72.5
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 1.4e-24 119.8 179 41.9
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.1e-24 118.6 122 49.2
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 3.1e-24 118.6 125 53.6
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 9.0e-24 117.1 1270 20.9
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 2.6e-23 115.5 273 31.5
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 3.4e-23 115.2 99 63.6
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 9.9e-23 113.6 162 37.0
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 2.1e-20 105.9 86 54.7
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 4.6e-20 104.8 76 56.6
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 6.6e-19 100.9 126 43.7
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 3.6e-17 95.1 55 87.3
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 6.9e-16 90.9 148 37.2
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 2.0e-15 89.4 75 58.7
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 3.8e-14 85.1 90 45.6
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 1.4e-13 83.2 79 48.1
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 1.3e-11 76.6 62 58.1
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 1.8e-11 76.3 73 46.6
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 2.3e-11 75.9 91 49.5
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 8.7e-11 73.9 67 61.2
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 2.5e-10 72.4 61 62.3
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 8.1e-09 67.4 48 60.4
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 6.9e-08 64.3 103 39.8


User provided reference genes

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