Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g039780 Solanum pennellii HOM05D007306 ORTHO05D009112 6.0e-65 250.8 131 100.0
Solyc03g120950.3 Solanum lycopersicum HOM05D007306 ORTHO05D009112 7.3e-63 243.8 131 97.7
PGSC0003DMG400002614 Solanum tuberosum HOM05D007306 ORTHO05D009112 2.0e-60 235.7 131 94.7
CAN.G1143.4 Capsicum annuum HOM05D007306 ORTHO05D009112 1.1e-39 166.8 135 75.6
Peaxi162Scf00258g00720 Petunia axillaris HOM05D007306 ORTHO05D009112 4.0e-37 158.3 132 71.2
Nitab4.5_0007619g0010 Nicotiana tabacum HOM05D007306 ORTHO05D009112 9.9e-36 153.7 132 69.7
Nitab4.5_0001137g0060 Nicotiana tabacum HOM05D007306 ORTHO05D009112 1.7e-35 152.9 129 72.1
Dinv14300 Davidia involucrata HOM05D007306 ORTHO05D009112 1.2e-28 130.2 134 59.0
Hma1.2p1_0386F.1_g141880 Hydrangea macrophylla HOM05D007306 ORTHO05D009112 1.5e-28 129.8 132 56.8
Thecc.05G171400 Theobroma cacao HOM05D007306 ORTHO05D009112 2.4e-26 122.5 141 52.5
Migut.J01836 Erythranthe guttata HOM05D007306 ORTHO05D009112 3.2e-26 122.1 133 54.1
QL07p023738 Quercus lobata HOM05D007306 ORTHO05D009112 7.1e-26 120.9 132 55.3
Cpa.g.sc85.66 Carica papaya HOM05D007306 ORTHO05D009112 2.7e-25 119.0 128 56.2
HanXRQChr13g0390881 Helianthus annuus HOM05D007306 ORTHO05D009112 2.7e-25 119.0 132 56.1
Actinidia32393 Actinidia chinensis HOM05D007306 ORTHO05D009112 3.5e-25 118.6 123 51.2
Gohir.A01G191300 Gossypium hirsutum HOM05D007306 ORTHO05D009112 4.6e-25 118.2 143 53.1
Gorai.002G224300 Gossypium raimondii HOM05D007306 ORTHO05D009112 4.6e-25 118.2 143 53.1
Gohir.D01G178600 Gossypium hirsutum HOM05D007306 ORTHO05D009112 3.0e-24 115.5 143 52.4
Cc06_g15870 Coffea canephora HOM05D007306 ORTHO05D009112 3.9e-24 115.2 145 49.0
Nn2g15686 Nelumbo nucifera HOM05D007306 ORTHO05D009112 3.9e-24 115.2 130 53.8
SalBow6G0438 Salvia bowleyana HOM05D007306 ORTHO05D009112 6.7e-24 114.4 138 53.6
SalBow6G2293 Salvia bowleyana HOM05D007306 ORTHO05D009112 6.7e-24 114.4 138 53.6
Atru.chr8.1112 Acer truncatum HOM05D007306 ORTHO05D009112 1.1e-23 113.6 133 54.9
CANSAT64G1677 Cannabis sativa HOM05D007306 ORTHO05D009112 1.1e-23 113.6 133 48.9
MSTRG.19909 Avicennia marina HOM05D007306 ORTHO05D009112 1.5e-23 113.2 145 48.3
COL.COLO4_33982 Corchorus olitorius HOM05D007306 ORTHO05D009112 1.5e-23 113.2 152 50.7
PGR004G2053 Punica granatum HOM05D007306 ORTHO05D009112 1.5e-23 113.2 138 50.0
Oeu063786.1 Olea europaea HOM05D007306 ORTHO05D009112 1.9e-23 112.8 126 56.3
Actinidia22036 Actinidia chinensis HOM05D007306 ORTHO05D009112 4.3e-23 111.7 123 53.7
Lj1g0014955 Lotus japonicus HOM05D007306 ORTHO05D009112 4.3e-23 111.7 123 54.5
SGA_v2.0_scaffold69G23062 Striga asiatica HOM05D007306 ORTHO05D009112 4.3e-23 111.7 138 51.4
Rhsim03G0005900 Rhododendron simsii HOM05D007306 ORTHO05D009112 5.6e-23 111.3 122 53.3
Duzib093G0428 Durio zibethinus HOM05D007306 ORTHO05D009112 9.6e-23 110.5 139 47.5
TWI74G1393 Tripterygium wilfordii HOM05D007306 ORTHO05D009112 1.3e-22 110.2 136 52.2
CiPaw.09G030300 Carya illinoinensis HOM05D007306 ORTHO05D009112 2.1e-22 109.4 133 51.9
ECA248G3448 Erigeron canadensis HOM05D007306 ORTHO05D009112 2.1e-22 109.4 134 48.5
FAN09G2453 Fragaria x ananassa HOM05D007306 ORTHO05D009112 2.1e-22 109.4 132 50.0
Psat3g068560 Pisum sativum HOM05D007306 ORTHO05D009112 2.1e-22 109.4 124 53.2
arahy.Tifrunner.gnm1.ann1.I9AM74 Arachis hypogaea HOM05D007306 ORTHO05D009112 2.8e-22 109.0 126 53.2
vmacro07907 Vaccinium macrocarpon HOM05D007306 ORTHO05D009112 2.8e-22 109.0 122 54.1
FvH4_6g22320 Fragaria vesca HOM05D007306 ORTHO05D009112 3.7e-22 108.6 132 50.0
FAN05G3567 Fragaria x ananassa HOM05D007306 ORTHO05D009112 3.7e-22 108.6 132 50.0
TPR.G22157 Trifolium pratense HOM05D007306 ORTHO05D009112 8.1e-22 107.5 123 53.7
FAN02G3291 Fragaria x ananassa HOM05D007306 ORTHO05D009112 1.1e-21 107.1 132 49.2
FAN14G0362 Fragaria x ananassa HOM05D007306 ORTHO05D009112 1.1e-21 107.1 132 49.2
Aqoxy1G00127 Aquilegia oxysepala HOM05D007306 ORTHO05D009112 1.4e-21 106.7 136 48.5
Prupe.7G077000 Prunus persica HOM05D007306 ORTHO05D009112 1.4e-21 106.7 135 48.1
RcHm_v2.0_Chr3g0479681 Rosa chinensis HOM05D007306 ORTHO05D009112 1.8e-21 106.3 132 48.5
TAR623G0307 Trochodendron aralioides HOM05D007306 ORTHO05D009112 1.8e-21 106.3 132 49.2
arahy.Tifrunner.gnm1.ann1.T0JWFY Arachis hypogaea HOM05D007306 ORTHO05D009112 4.0e-21 105.1 126 51.6
Lsat_1_v5_gn_5_163480 Lactuca sativa HOM05D007306 ORTHO05D009112 9.0e-21 104.0 135 49.6
Ciclev10013031m.g Citrus clementina HOM05D007306 ORTHO05D009112 1.5e-20 103.2 145 46.2
MD12G1057100 Malus domestica HOM05D007306 ORTHO05D009112 2.0e-20 102.8 138 48.6
MD14G1057700 Malus domestica HOM05D007306 ORTHO05D009112 2.0e-20 102.8 138 50.0
Lalb_Chr18g0047871 Lupinus albus HOM05D007306 ORTHO05D009112 1.0e-19 100.5 125 49.6
Medtr7g093220 Medicago truncatula HOM05D007306 ORTHO05D009112 1.3e-19 100.1 122 53.3
Phvul.007G259800 Phaseolus vulgaris HOM05D007306 ORTHO05D009112 1.3e-19 100.1 124 46.8
Manes.09G035400 Manihot esculenta HOM05D007306 ORTHO05D009112 1.7e-19 99.8 118 50.8
CiPaw.10G026400 Carya illinoinensis HOM05D007306 ORTHO05D009112 2.2e-19 99.4 133 47.4
Phvul.001G142300 Phaseolus vulgaris HOM05D007306 ORTHO05D009112 2.2e-19 99.4 119 51.3
PSO339G5155 Papaver somniferum HOM05D007306 ORTHO05D009112 3.8e-19 98.6 140 43.6
Potri.006G192500 Populus trichocarpa HOM05D007306 ORTHO05D009112 3.8e-19 98.6 139 48.9
PSO384G4645 Papaver somniferum HOM05D007306 ORTHO05D009112 4.9e-19 98.2 140 43.6
VMungo1383G3094 Vigna mungo HOM05D007306 ORTHO05D009112 1.1e-18 97.1 121 50.4
C04p03260 Brassica napus HOM05D007306 ORTHO05D009112 1.9e-18 96.3 125 48.0
Cfa020165 Carpinus fangiana HOM05D007306 ORTHO05D009112 1.9e-18 96.3 131 48.1
BcaC02g12458 Brassica carinata HOM05D007306 ORTHO05D009112 3.2e-18 95.5 125 48.0
BcaC02g12459 Brassica carinata HOM05D007306 ORTHO05D009112 3.2e-18 95.5 125 48.0
BolC4t21964H Brassica oleracea HOM05D007306 ORTHO05D009112 3.2e-18 95.5 125 48.0
Sed0004413 Sechium edule HOM05D007306 ORTHO05D009112 5.5e-18 94.7 125 47.2
AL4G40480 Arabidopsis lyrata HOM05D007306 ORTHO05D009112 7.1e-18 94.4 121 44.6
Glyma.03G144700 Glycine max HOM05D007306 ORTHO05D009112 7.1e-18 94.4 123 48.0
Glyma.09G111500 Glycine max HOM05D007306 ORTHO05D009112 7.1e-18 94.4 120 47.5
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 1.2e-17 93.6 144 43.1
CARHR137170 Cardamine hirsuta HOM05D007306 ORTHO05D009112 2.1e-17 92.8 125 44.8
A05p02730 Brassica napus HOM05D007306 ORTHO05D009112 2.7e-17 92.4 126 44.4
BraA05t19265Z Brassica rapa HOM05D007306 ORTHO05D009112 2.7e-17 92.4 126 44.4
Potri.016G045700 Populus trichocarpa HOM05D007306 ORTHO05D009112 2.7e-17 92.4 153 41.2
AT2G42110 Arabidopsis thaliana HOM05D007306 ORTHO05D009112 3.5e-17 92.0 122 45.1
BcaNung04408 Brassica carinata HOM05D007306 ORTHO05D009112 3.5e-17 92.0 126 46.0
Thhalv10017403m.g Eutrema salsugineum HOM05D007306 ORTHO05D009112 7.9e-17 90.9 130 44.6
Hund24792 Selenicereus undatus HOM05D007306 ORTHO05D009112 7.9e-17 90.9 152 44.7
Sp4g24320 Schrenkiella parvula HOM05D007306 ORTHO05D009112 3.9e-16 88.6 124 43.5
Aa31LG1G24110 Aethionema arabicum HOM05D007306 ORTHO05D009112 5.1e-16 88.2 129 41.9
GSVIVG01033497001 Vitis vinifera HOM05D007306 ORTHO05D009112 1.9e-15 86.3 133 40.6
AUR62012035 Chenopodium quinoa HOM05D007306 ORTHO05D009112 4.3e-15 85.1 132 46.2
Manes.08G044500 Manihot esculenta HOM05D007306 ORTHO05D009112 4.3e-15 85.1 140 40.0
Carub.0004s2445 Capsella rubella HOM05D007306 ORTHO05D009112 5.7e-15 84.7 126 40.5
Duzib106G0602 Durio zibethinus HOM05D007306 ORTHO05D009112 7.4e-15 84.3 139 38.8
MELO3C009626.2 Cucumis melo HOM05D007306 ORTHO05D009112 9.6e-15 84.0 130 43.1
CsaV3_3G038820 Cucumis sativus L. HOM05D007306 ORTHO05D009112 1.6e-14 83.2 132 42.4
VMungo0720G2523 Vigna mungo HOM05D007306 ORTHO05D009112 2.8e-14 82.4 118 39.8
MBI06_g29488_MAGBIO Magnolia biondii HOM05D007306 ORTHO05D009112 3.7e-14 82.0 123 48.0
Glyma.19G147700 Glycine max HOM05D007306 ORTHO05D009112 1.4e-13 80.1 117 45.3
ClCG10G017530 Citrullus lanatus HOM05D007306 ORTHO05D009112 2.4e-13 79.3 129 42.6
Sabra16G0049700 Salix brachista HOM05D007306 ORTHO05D009112 3.1e-13 79.0 70 58.6
Ca_08521_v3 Cicer arietinum L. HOM05D007306 ORTHO05D009112 8.4e-11 70.9 99 49.5
Ah.04g152480 Amaranthus hybridus HOM05D007306 ORTHO05D009112 1.1e-10 70.5 164 34.8
THA.LOC104802563 Tarenaya hassleriana HOM05D007306 ORTHO05D009112 1.1e-10 70.5 125 40.8
AUR62015369 Chenopodium quinoa HOM05D007306 ORTHO05D009112 1.4e-10 70.1 150 38.0
CDE02G0820 Ceratophyllum demersum HOM05D007306 ORTHO05D009112 1.6e-09 66.6 133 42.1
Sed0003989 Sechium edule HOM05D007306 ORTHO05D009112 2.7e-09 65.9 91 40.7
ATR0807G086 Amborella trichopoda HOM05D007306 ORTHO05D009112 3.5e-09 65.5 126 38.1
unitig_22.g6026 Utricularia gibba HOM05D007306 ORTHO05D009112 7.9e-09 64.3 117 41.9
EL10Ac3g06917 Beta vulgaris HOM05D007306 ORTHO05D009112 2.3e-08 62.8 162 30.9
Sc19g0007100 Simmondsia chinensis HOM05D007306 ORTHO05D009112 8.7e-08 60.8 85 42.4
DCAR_013544 Daucus carota HOM05D002612 ORTHO05D002859 3.3e-07 58.9 115 40.0
Haze_19991 Corylus avellana HOM05D000267 ORTHO05D000298 8.2e-06 54.3 30 76.7
Os03g0128300 Oryza sativa ssp. japonica HOM05D007306 ORTHO05D009112 8.2e-06 54.3 160 33.1


User provided reference genes

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