Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g039710 Solanum pennellii HOM05D008072 ORTHO05D010204 1.4e-54 216.1 110 100.0
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 5.9e-50 200.7 106 96.2
PGSC0003DMG400002533 Solanum tuberosum HOM05D008072 ORTHO05D010204 7.8e-50 200.3 113 92.9
Peaxi162Scf00038g00843 Petunia axillaris HOM05D008072 ORTHO05D010204 9.8e-37 156.8 114 73.7
Oeu060494.1 Olea europaea HOM05D008072 ORTHO05D010204 5.1e-25 117.9 110 58.2
Nitab4.5_0001755g0100 Nicotiana tabacum HOM05D008072 ORTHO05D010204 7.3e-24 114.0 84 72.6
Dinv37992 Davidia involucrata HOM05D008072 ORTHO05D010204 4.0e-22 108.2 110 56.4
Cc04_g02690 Coffea canephora HOM05D008072 ORTHO05D010204 1.3e-20 103.2 112 51.8
Hma1.2p1_3269F.1_g334750 Hydrangea macrophylla HOM05D008072 ORTHO05D010204 1.7e-20 102.8 111 53.2
CSS0040470 Camellia sinensis var. sinensis HOM05D008072 ORTHO05D010204 7.1e-19 97.4 116 52.6
MSTRG.9481 Avicennia marina HOM05D008072 ORTHO05D010204 2.1e-18 95.9 115 49.6
SalBow7G3462 Salvia bowleyana HOM05D008072 ORTHO05D010204 2.1e-18 95.9 116 50.0
Aqoxy7G01464 Aquilegia oxysepala HOM05D008072 ORTHO05D010204 2.7e-18 95.5 111 49.5
QL05p020523 Quercus lobata HOM05D008072 ORTHO05D010204 3.0e-17 92.0 109 52.3
Rhsim12G0202400 Rhododendron simsii HOM05D008072 ORTHO05D010204 6.6e-17 90.9 110 46.4
Atru.chr1.3499 Acer truncatum HOM05D008072 ORTHO05D010204 8.7e-17 90.5 121 46.3
Potri.001G188400 Populus trichocarpa HOM05D008072 ORTHO05D010204 8.7e-17 90.5 115 49.6
Actinidia09003 Actinidia chinensis HOM05D008072 ORTHO05D010204 1.9e-16 89.4 113 46.0
HanXRQChr16g0501221 Helianthus annuus HOM05D008072 ORTHO05D010204 7.3e-16 87.4 110 44.5
PGR102G0255 Punica granatum HOM05D008072 ORTHO05D010204 1.2e-15 86.7 121 47.1
FAN05G4246 Fragaria x ananassa HOM05D008072 ORTHO05D010204 1.6e-15 86.3 119 47.9
TAR626G1017 Trochodendron aralioides HOM05D008072 ORTHO05D010204 2.1e-15 85.9 106 47.2
FvH4_6g32180 Fragaria vesca HOM05D008072 ORTHO05D010204 3.6e-15 85.1 114 48.2
FAN14G4057 Fragaria x ananassa HOM05D008072 ORTHO05D010204 4.7e-15 84.7 115 47.8
FAN02G2294 Fragaria x ananassa HOM05D008072 ORTHO05D010204 6.2e-15 84.3 119 47.1
FAN09G3706 Fragaria x ananassa HOM05D008072 ORTHO05D010204 6.2e-15 84.3 119 47.1
GSVIVG01017012001 Vitis vinifera HOM05D008072 ORTHO05D010204 1.4e-14 83.2 113 46.0
Prupe.3G061100 Prunus persica HOM05D008072 ORTHO05D010204 1.8e-14 82.8 112 44.6
RcHm_v2.0_Chr2g0140071 Rosa chinensis HOM05D008072 ORTHO05D010204 1.8e-14 82.8 113 47.8
Sabra01G0152600 Salix brachista HOM05D008072 ORTHO05D010204 2.4e-14 82.4 116 44.8
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 4.4e-13 78.2 94 45.7
Cpa.g.c31416 Carica papaya HOM05D008072 ORTHO05D010204 9.9e-13 77.0 112 42.0
TWI18G1284 Tripterygium wilfordii HOM05D008072 ORTHO05D010204 2.2e-12 75.9 115 41.7
MD17G1186400 Malus domestica HOM05D008072 ORTHO05D010204 2.9e-12 75.5 115 40.0
Thecc.06G097600 Theobroma cacao HOM05D008072 ORTHO05D010204 6.4e-12 74.3 111 40.5
Nn2g11609 Nelumbo nucifera HOM05D008072 ORTHO05D010204 1.4e-11 73.2 110 40.0
Lsat_1_v5_gn_4_99940 Lactuca sativa HOM05D008072 ORTHO05D010204 1.9e-11 72.8 102 40.2
Duzib192G0771 Durio zibethinus HOM05D008072 ORTHO05D010204 5.4e-11 71.2 120 40.8
Manes.04G132700 Manihot esculenta HOM05D008072 ORTHO05D010204 5.4e-11 71.2 116 44.8
VMungo0331G2041 Vigna mungo HOM05D008072 ORTHO05D010204 1.2e-10 70.1 116 43.1
Ciclev10026797m.g Citrus clementina HOM05D008072 ORTHO05D010204 2.1e-10 69.3 113 42.5
Phvul.010G146400 Phaseolus vulgaris HOM05D008072 ORTHO05D010204 2.1e-10 69.3 116 43.1
Haze_15831 Corylus avellana HOM05D008072 ORTHO05D010204 2.7e-10 68.9 159 33.3
Sed0011388 Sechium edule HOM05D008072 ORTHO05D010204 4.6e-10 68.2 110 43.6
Lalb_Chr04g0262911 Lupinus albus HOM05D008072 ORTHO05D010204 7.8e-10 67.4 113 46.0
Nn8g39117 Nelumbo nucifera HOM05D008072 ORTHO05D010204 7.8e-10 67.4 110 37.3
MBI01_g42894_MAGBIO Magnolia biondii HOM05D008072 ORTHO05D010204 1.0e-09 67.0 107 42.1
Sc10g0007210 Simmondsia chinensis HOM05D008072 ORTHO05D010204 1.0e-09 67.0 120 40.0
SGA_v2.0_scaffold4G02017 Striga asiatica HOM05D008072 ORTHO05D010204 1.0e-09 67.0 122 39.3
ClCG09G000070 Citrullus lanatus HOM05D008072 ORTHO05D010204 1.7e-09 66.2 122 39.3
Gorai.003G063000 Gossypium raimondii HOM05D008072 ORTHO05D010204 1.7e-09 66.2 90 50.0
Gohir.D03G059100 Gossypium hirsutum HOM05D008072 ORTHO05D010204 5.1e-09 64.7 90 48.9
Glyma.07G016900 Glycine max HOM05D008072 ORTHO05D010204 6.6e-09 64.3 113 40.7
Lj3g0001751 Lotus japonicus HOM05D008072 ORTHO05D010204 6.6e-09 64.3 113 43.4
CsaV3_7G035400 Cucumis sativus L. HOM05D008072 ORTHO05D010204 8.7e-09 63.9 125 37.6
CANSAT56G4142 Cannabis sativa HOM05D008072 ORTHO05D010204 1.1e-08 63.5 114 40.4
Glyma.08G202200 Glycine max HOM05D008072 ORTHO05D010204 1.5e-08 63.2 113 38.9
Gohir.A02G118500 Gossypium hirsutum HOM05D008072 ORTHO05D010204 1.5e-08 63.2 90 48.9
Oeu063939.2 Olea europaea HOM05D000181 ORTHO05D008575 5.6e-08 61.2 62 56.5
TPR.G35014 Trifolium pratense HOM05D008072 ORTHO05D010204 5.6e-08 61.2 115 39.1
AUR62031887 Chenopodium quinoa HOM05D008072 ORTHO05D010204 7.3e-08 60.8 113 41.6
MELO3C024449.2 Cucumis melo HOM05D008072 ORTHO05D010204 7.3e-08 60.8 124 37.1
MD09G1205700 Malus domestica HOM05D008072 ORTHO05D010204 9.6e-08 60.5 112 40.2
EL10Ac9g22100 Beta vulgaris HOM05D008072 ORTHO05D010204 2.1e-07 59.3 116 36.2
arahy.Tifrunner.gnm1.ann1.UX9EW1 Arachis hypogaea HOM05D008072 ORTHO05D010204 1.8e-06 56.2 105 38.1
arahy.Tifrunner.gnm1.ann1.XD1M86 Arachis hypogaea HOM05D008072 ORTHO05D010204 2.4e-06 55.8 105 38.1


User provided reference genes

Program Settings