Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 2.1e-38 161.8 77 100.0
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 2.1e-38 161.8 77 100.0
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 2.1e-38 161.8 77 100.0
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 3.1e-37 157.9 77 96.1
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 2.6e-36 154.8 77 92.2
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 2.4e-29 131.7 73 82.2
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 4.0e-29 131.0 78 78.2
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 4.0e-29 131.0 78 78.2
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 4.0e-29 131.0 71 83.1
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 4.0e-29 131.0 78 78.2
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 5.3e-29 130.6 72 79.2
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 1.5e-28 129.0 74 79.7
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 2.0e-28 128.6 75 77.3
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 3.4e-28 127.9 73 79.5
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 4.5e-28 127.5 78 76.9
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 7.6e-28 126.7 74 81.1
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 7.6e-28 126.7 72 79.2
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 1.0e-27 126.3 75 76.0
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 1.3e-27 125.9 73 79.5
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 1.3e-27 125.9 73 79.5
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 1.3e-27 125.9 77 75.3
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 1.3e-27 125.9 73 79.5
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.3e-27 125.9 73 80.8
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.3e-27 125.9 73 80.8
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 1.3e-27 125.9 73 80.8
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 1.3e-27 125.9 72 77.8
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.7e-27 125.6 72 79.2
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 1.7e-27 125.6 72 79.2
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 1.7e-27 125.6 75 76.0
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 2.2e-27 125.2 72 77.8
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 2.2e-27 125.2 78 70.5
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 2.2e-27 125.2 78 70.5
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 2.2e-27 125.2 78 70.5
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 2.2e-27 125.2 72 76.4
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 2.2e-27 125.2 74 75.7
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 2.9e-27 124.8 79 73.4
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 3.8e-27 124.4 78 75.6
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 3.8e-27 124.4 77 70.1
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 3.8e-27 124.4 78 75.6
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 4.9e-27 124.0 73 79.5
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 4.9e-27 124.0 68 83.8
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 6.5e-27 123.6 72 76.4
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 6.5e-27 123.6 76 77.6
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 6.5e-27 123.6 72 75.0
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 8.4e-27 123.2 77 71.4
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 1.1e-26 122.9 81 70.4
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 1.1e-26 122.9 77 71.4
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 1.4e-26 122.5 72 75.0
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 1.4e-26 122.5 74 71.6
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 1.4e-26 122.5 75 77.3
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 1.9e-26 122.1 78 71.8
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 1.9e-26 122.1 77 77.9
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 2.5e-26 121.7 73 78.1
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 3.2e-26 121.3 77 75.3
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 3.2e-26 121.3 82 70.7
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 4.2e-26 120.9 77 76.6
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 5.5e-26 120.6 79 70.9
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 7.1e-26 120.2 73 76.7
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 7.1e-26 120.2 71 76.1
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 7.1e-26 120.2 83 71.1
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 7.1e-26 120.2 72 72.2
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 9.3e-26 119.8 73 71.2
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 9.3e-26 119.8 70 77.1
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 1.2e-25 119.4 77 66.2
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 1.2e-25 119.4 59 93.2
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 1.2e-25 119.4 78 73.1
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 1.6e-25 119.0 78 73.1
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 1.6e-25 119.0 74 68.9
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.6e-25 119.0 77 67.5
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 1.6e-25 119.0 70 75.7
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 1.6e-25 119.0 72 73.6
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 2.1e-25 118.6 78 69.2
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 2.1e-25 118.6 74 68.9
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 2.1e-25 118.6 82 67.1
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 2.7e-25 118.2 79 70.9
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 2.7e-25 118.2 71 74.6
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 3.5e-25 117.9 77 67.5
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 3.5e-25 117.9 73 74.0
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 3.5e-25 117.9 77 68.8
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 4.6e-25 117.5 70 74.3
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 4.6e-25 117.5 72 70.8
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 4.6e-25 117.5 77 70.1
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 6.0e-25 117.1 74 71.6
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 6.0e-25 117.1 77 67.5
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 1.8e-24 115.5 73 67.1
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 3.0e-24 114.8 72 69.4
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 3.9e-24 114.4 73 69.9
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 5.1e-24 114.0 73 71.2
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 6.7e-24 113.6 70 70.0
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 8.7e-24 113.2 75 70.7
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 1.1e-23 112.8 61 82.0
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 1.9e-23 112.1 78 62.8
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 3.3e-23 111.3 101 53.5
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 5.7e-23 110.5 70 72.9
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 7.4e-23 110.2 75 69.3
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 9.6e-23 109.8 60 80.0
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 1.3e-22 109.4 72 66.7
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 1.6e-22 109.0 59 81.4
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 2.1e-22 108.6 78 66.7
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 3.7e-22 107.8 74 68.9
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 4.8e-22 107.5 73 69.9
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 3.1e-21 104.8 60 75.0
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 6.9e-21 103.6 59 76.3
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 6.9e-21 103.6 78 62.8
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 1.9e-18 95.5 74 59.5
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 3.2e-18 94.7 77 57.1
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 4.2e-18 94.4 69 63.8
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 5.5e-18 94.0 76 57.9
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 2.1e-17 92.0 64 76.6
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 2.1e-17 92.0 59 71.2
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 3.6e-17 91.3 60 66.7
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 4.6e-17 90.9 59 67.8
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 2.3e-16 88.6 61 63.9
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 3.0e-16 88.2 74 55.4
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 3.9e-16 87.8 69 58.0
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 1.5e-15 85.9 77 54.5
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 1.5e-15 85.9 77 54.5
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 1.5e-15 85.9 77 54.5
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 4.3e-15 84.3 59 62.7
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 7.4e-15 83.6 69 56.5
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 9.7e-15 83.2 59 61.0
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 2.2e-14 82.0 59 62.7
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 2.2e-14 82.0 59 62.7
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 3.7e-14 81.3 59 61.0
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 3.7e-14 81.3 59 61.0
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 2.9e-11 71.6 54 61.1
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 6.5e-11 70.5 54 59.3
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 3.2e-10 68.2 50 60.0
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 4.6e-09 64.3 51 51.0


User provided reference genes

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