Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 1.7e-111 406.0 199 100.0
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 4.6e-101 371.3 184 98.9
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 5.6e-99 364.4 184 96.2
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 4.5e-96 354.8 184 92.9
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.1e-94 350.1 184 92.9
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 4.2e-94 348.2 184 91.8
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 8.1e-82 307.4 177 83.6
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 1.1e-81 307.0 182 81.3
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 2.9e-79 298.9 182 79.7
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 3.8e-79 298.5 177 80.2
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.1e-78 297.0 178 81.5
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 1.4e-78 296.6 178 79.2
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 2.7e-77 292.4 178 77.0
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 4.6e-77 291.6 189 75.1
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 1.3e-76 290.0 179 76.5
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 3.9e-76 288.5 178 78.1
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 3.9e-76 288.5 178 79.2
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 1.1e-75 287.0 172 79.1
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 1.9e-75 286.2 176 77.8
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 2.5e-75 285.8 178 79.2
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 3.3e-75 285.4 178 77.0
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 6.3e-74 281.2 178 76.4
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 8.2e-74 280.8 177 77.4
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 1.8e-73 279.6 183 75.4
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 3.1e-73 278.9 184 71.2
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 4.1e-73 278.5 178 76.4
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 5.3e-73 278.1 179 73.2
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 1.5e-72 276.6 183 73.8
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 2.0e-72 276.2 178 75.3
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 4.5e-72 275.0 178 75.3
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 7.6e-72 274.2 178 73.6
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 7.6e-72 274.2 184 72.3
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 1.0e-71 273.9 175 76.6
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 1.3e-71 273.5 175 75.4
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 1.3e-71 273.5 178 74.7
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 1.3e-71 273.5 178 73.6
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 2.2e-71 272.7 178 75.3
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 2.9e-71 272.3 167 80.8
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 2.9e-71 272.3 168 80.4
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 3.8e-71 271.9 166 78.9
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 3.8e-71 271.9 179 73.2
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 1.1e-70 270.4 170 73.5
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 1.9e-70 269.6 178 70.8
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.5e-70 269.2 178 73.6
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 2.5e-70 269.2 175 74.3
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 4.2e-70 268.5 169 76.9
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 4.2e-70 268.5 178 73.6
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 5.5e-70 268.1 187 70.6
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 7.2e-70 267.7 178 73.6
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 7.2e-70 267.7 163 81.0
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 7.2e-70 267.7 178 72.5
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 9.3e-70 267.3 168 75.0
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 1.2e-69 266.9 184 71.2
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 1.2e-69 266.9 169 74.6
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 2.1e-69 266.2 178 73.0
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 3.6e-69 265.4 182 72.5
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 3.6e-69 265.4 169 76.3
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 3.6e-69 265.4 179 72.6
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 3.6e-69 265.4 173 75.7
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 4.6e-69 265.0 178 70.2
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 4.6e-69 265.0 178 72.5
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 6.1e-69 264.6 179 71.5
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 6.1e-69 264.6 168 77.4
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 7.9e-69 264.2 179 72.6
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 7.9e-69 264.2 178 73.0
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 1.3e-68 263.5 179 71.5
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 1.3e-68 263.5 178 70.8
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 1.8e-68 263.1 181 71.8
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.8e-68 263.1 186 75.3
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 5.1e-68 261.5 177 72.3
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 5.1e-68 261.5 176 69.9
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.5e-67 260.0 177 71.2
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 1.5e-67 260.0 180 72.8
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 1.9e-67 259.6 179 72.1
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 7.4e-67 257.7 177 70.1
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 1.3e-66 256.9 181 68.5
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 2.8e-66 255.8 179 70.9
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 2.8e-66 255.8 189 68.8
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 2.8e-66 255.8 175 70.9
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 2.8e-66 255.8 178 68.5
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 3.7e-66 255.4 179 69.3
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 3.7e-66 255.4 168 74.4
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 8.2e-66 254.2 178 69.1
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 2.4e-65 252.7 176 69.3
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 3.1e-65 252.3 178 70.2
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 4.1e-65 251.9 179 69.8
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 5.3e-65 251.5 155 78.7
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 9.1e-65 250.8 178 68.5
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.5e-64 250.0 184 69.6
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 5.9e-64 248.1 178 67.4
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 7.7e-64 247.7 181 68.5
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.0e-63 247.3 168 70.2
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.3e-63 246.9 178 67.4
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 1.3e-63 246.9 164 73.8
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 2.2e-63 246.1 179 66.5
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 5.0e-63 245.0 166 71.7
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 2.5e-62 242.7 180 66.7
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 3.2e-62 242.3 166 71.1
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 5.5e-62 241.5 178 66.3
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 1.2e-61 240.4 175 65.7
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 1.6e-61 240.0 175 66.3
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 1.6e-61 240.0 178 62.4
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 2.1e-61 239.6 180 65.6
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 1.8e-60 236.5 188 64.4
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 3.9e-60 235.3 202 60.9
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 1.1e-59 233.8 190 62.6
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.5e-59 233.4 156 73.1
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 4.4e-59 231.9 175 64.0
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 1.3e-58 230.3 178 65.2
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 6.3e-58 228.0 177 66.7
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.4e-57 226.1 168 64.9
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 5.3e-57 224.9 178 64.0
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 1.5e-56 223.4 157 70.7
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 7.7e-56 221.1 181 58.6
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 8.5e-55 217.6 167 66.5
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 8.5e-55 217.6 174 64.4
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 4.2e-54 215.3 151 66.9
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 5.2e-52 208.4 126 79.4
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 6.7e-52 208.0 126 80.2
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 4.4e-51 205.3 184 60.9
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 1.7e-50 203.4 181 55.8
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 3.7e-50 202.2 180 55.6
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 2.4e-49 199.5 125 79.2
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.2e-48 197.2 185 60.0
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 7.7e-48 194.5 131 71.8
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 2.9e-47 192.6 183 53.6
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 4.2e-46 188.7 178 55.6
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 1.2e-43 180.6 119 73.1
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 1.5e-43 180.3 131 62.6
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 2.2e-42 176.4 104 83.7
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 2.2e-39 166.4 177 53.1
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 2.7e-37 159.5 175 45.7
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 3.0e-36 156.0 114 67.5
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 1.4e-33 147.1 117 65.8
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 4.3e-14 82.4 60 68.3
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 5.2e-12 75.5 172 34.3
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 4.4e-11 72.4 56 57.1
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 7.5e-11 71.6 52 61.5
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 2.2e-10 70.1 54 63.0
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 4.9e-10 68.9 169 30.8
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 6.4e-10 68.6 170 29.4
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 6.4e-10 68.6 173 29.5
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 4.1e-09 65.9 171 28.7
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 4.1e-09 65.9 171 28.7
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 4.1e-09 65.9 171 28.7
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 4.1e-09 65.9 171 29.8
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 5.4e-09 65.5 171 27.5
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 5.4e-09 65.5 171 27.5
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 5.4e-09 65.5 170 31.2
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 1.2e-08 64.3 171 27.5
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 1.6e-08 63.9 172 29.1
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 3.5e-08 62.8 171 27.5
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 3.5e-08 62.8 169 27.2
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 4.6e-08 62.4 170 28.2
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 7.8e-08 61.6 152 27.6
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 7.8e-08 61.6 180 26.1
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 1.3e-07 60.8 171 30.4
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 3.0e-07 59.7 174 25.9
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 3.0e-07 59.7 185 28.1
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 3.0e-07 59.7 174 29.3
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 3.9e-07 59.3 169 29.6
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 5.0e-07 58.9 186 27.4
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 5.0e-07 58.9 171 26.3
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 8.6e-07 58.2 169 28.4
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 9.5e-06 54.7 185 24.9
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 9.5e-06 54.7 170 25.9


User provided reference genes

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