Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 7.2e-152 540.4 252 100.0
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 2.4e-147 525.4 250 96.8
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 8.6e-137 490.3 265 87.9
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 1.5e-136 489.6 266 85.7
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.9e-136 489.2 271 85.2
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.1e-135 485.7 273 83.9
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 9.2e-131 470.3 251 86.5
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 1.3e-129 466.5 233 91.4
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 3.9e-129 464.9 251 84.9
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 6.6e-129 464.2 252 82.9
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.9e-128 462.6 252 84.1
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 5.6e-128 461.1 248 84.7
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 2.1e-127 459.1 251 84.1
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 1.2e-125 453.4 233 85.8
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 3.4e-125 451.8 251 82.5
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 3.4e-125 451.8 230 86.5
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 4.4e-125 451.4 236 83.9
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 4.4e-125 451.4 235 87.2
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 1.7e-124 449.5 244 82.0
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 2.2e-124 449.1 238 84.5
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 1.9e-123 446.0 234 84.6
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 3.2e-123 445.3 233 84.5
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 7.1e-123 444.1 236 83.5
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 9.2e-123 443.7 232 84.9
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 1.6e-122 443.0 234 84.6
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 4.6e-122 441.4 232 84.1
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 6.0e-122 441.0 235 83.0
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 7.8e-122 440.7 235 83.0
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 7.8e-122 440.7 249 78.7
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.0e-121 440.3 233 83.7
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 3.0e-121 438.7 234 82.5
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 1.1e-120 436.8 232 83.6
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 1.1e-120 436.8 233 82.4
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.9e-120 436.0 235 83.0
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 1.9e-120 436.0 235 81.3
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 2.5e-120 435.6 245 79.6
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 3.3e-120 435.3 244 79.1
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 3.3e-120 435.3 232 81.9
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 5.6e-120 434.5 233 82.4
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 7.3e-120 434.1 250 78.8
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.8e-119 432.2 233 81.5
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 3.6e-119 431.8 232 82.3
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 4.7e-119 431.4 247 77.7
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 8.1e-119 430.6 235 80.4
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.1e-118 430.3 245 77.1
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.4e-118 429.9 234 80.3
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 2.4e-118 429.1 245 76.7
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 2.4e-118 429.1 235 81.3
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.4e-118 429.1 233 81.5
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 3.1e-118 428.7 235 81.3
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 3.1e-118 428.7 245 76.7
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 3.1e-118 428.7 244 76.6
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 5.2e-118 427.9 245 76.7
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 5.2e-118 427.9 232 82.3
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 5.2e-118 427.9 236 80.5
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 6.8e-118 427.6 226 82.3
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 8.9e-118 427.2 233 79.8
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 8.9e-118 427.2 249 75.9
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 1.2e-117 426.8 247 75.7
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 1.2e-117 426.8 232 81.9
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 1.2e-117 426.8 240 77.9
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 1.5e-117 426.4 233 79.0
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 2.0e-117 426.0 233 79.0
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 2.0e-117 426.0 235 81.3
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 2.6e-117 425.6 237 78.9
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 4.4e-117 424.9 246 75.6
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 4.4e-117 424.9 234 80.3
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 4.4e-117 424.9 243 76.5
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 5.8e-117 424.5 235 80.0
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 5.8e-117 424.5 233 79.0
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 7.6e-117 424.1 233 80.7
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 9.9e-117 423.7 236 79.7
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 9.9e-117 423.7 235 80.4
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 1.3e-116 423.3 237 78.5
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 1.7e-116 422.9 232 79.3
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 2.9e-116 422.2 226 81.0
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 4.9e-116 421.4 248 74.6
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 4.9e-116 421.4 232 79.7
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 4.9e-116 421.4 235 77.9
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 4.9e-116 421.4 234 79.9
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.4e-115 419.9 226 80.1
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 1.4e-115 419.9 226 80.1
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 1.4e-115 419.9 240 76.7
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 1.9e-115 419.5 240 75.8
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 1.9e-115 419.5 233 79.0
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 1.9e-115 419.5 229 79.9
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 2.4e-115 419.1 234 79.1
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 3.2e-115 418.7 245 75.9
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 4.2e-115 418.3 233 78.5
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 5.4e-115 417.9 243 76.1
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 5.4e-115 417.9 232 78.9
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 5.4e-115 417.9 238 77.7
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 7.1e-115 417.5 232 78.9
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 7.1e-115 417.5 233 78.1
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 7.1e-115 417.5 232 77.6
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 7.1e-115 417.5 247 74.9
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 9.2e-115 417.2 243 75.3
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 1.2e-114 416.8 232 78.0
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 1.2e-114 416.8 247 74.5
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 1.6e-114 416.4 234 77.8
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 1.6e-114 416.4 229 79.5
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 2.1e-114 416.0 231 77.9
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 2.1e-114 416.0 234 77.8
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 2.7e-114 415.6 247 75.3
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 3.5e-114 415.2 231 77.9
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 3.5e-114 415.2 231 77.9
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 3.5e-114 415.2 235 77.4
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 3.5e-114 415.2 245 74.3
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 3.5e-114 415.2 247 74.9
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 6.0e-114 414.5 232 77.2
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 6.0e-114 414.5 233 77.3
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 7.8e-114 414.1 243 75.7
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 7.8e-114 414.1 243 75.7
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 7.8e-114 414.1 229 77.7
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 1.0e-113 413.7 227 79.3
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 1.3e-113 413.3 226 79.6
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 1.3e-113 413.3 229 78.6
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 1.7e-113 412.9 243 75.3
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 1.7e-113 412.9 233 75.5
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 3.9e-113 411.8 236 77.5
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 3.9e-113 411.8 244 75.0
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 3.9e-113 411.8 244 75.0
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.9e-112 409.5 244 74.6
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 2.5e-112 409.1 236 77.1
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 7.3e-112 407.5 235 77.9
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.2e-111 406.8 240 74.2
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 2.1e-111 406.0 233 75.5
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 2.8e-111 405.6 233 75.1
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 3.6e-111 405.2 230 74.8
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.4e-110 402.5 236 76.3
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 9.0e-110 400.6 234 75.2
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.2e-109 400.2 214 82.2
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.7e-108 396.4 227 75.8
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 2.2e-108 396.0 232 74.6
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 4.9e-108 394.8 232 75.0
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 8.4e-108 394.0 232 75.9
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 1.1e-107 393.7 232 74.1
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 1.1e-107 393.7 234 74.4
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 1.4e-107 393.3 234 74.4
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.6e-106 389.8 234 73.5
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 6.0e-106 387.9 245 69.0
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 1.3e-103 380.2 230 74.3
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 2.1e-98 362.8 205 78.0
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 1.0e-97 360.5 236 70.3
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 3.9e-97 358.6 239 66.5
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 6.7e-97 357.8 223 69.1
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 1.1e-96 357.1 242 67.4
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 1.9e-96 356.3 244 66.0
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 1.4e-94 350.1 240 64.6
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 4.0e-94 348.6 231 67.1
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.3e-92 343.6 159 98.7
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 4.0e-86 322.0 235 63.8
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 1.7e-84 316.6 158 88.0
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.4e-83 313.5 164 86.0
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 5.1e-81 305.1 234 62.0
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 1.1e-62 244.2 163 66.3
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 1.7e-52 210.3 218 46.8
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.6e-50 203.8 236 46.2
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 1.2e-48 197.6 202 52.0
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 3.4e-40 169.5 89 84.3
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 1.0e-33 147.9 107 66.4
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 1.7e-28 130.6 116 56.0
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 6.1e-26 122.1 138 47.1
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 9.8e-16 88.2 51 64.7
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 1.5e-11 74.3 62 54.8


User provided reference genes

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