Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 0.0e+00 1382.1 710 100.0
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 0.0e+00 1345.9 710 97.3
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 0.0e+00 1281.2 744 89.8
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 4.4e-311 1070.8 713 79.1
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 3.7e-270 934.9 738 68.7
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 5.8e-247 857.8 788 62.2
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 7.1e-245 850.9 776 63.1
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 9.2e-120 435.3 754 39.9
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 6.2e-108 396.0 843 36.1
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 2.6e-106 390.6 726 39.3
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 3.8e-105 386.7 679 40.4
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 7.1e-104 382.5 794 36.4
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 1.1e-101 375.2 900 33.7
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 7.4e-101 372.5 752 39.0
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 4.0e-99 366.7 721 37.2
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 4.0e-99 366.7 721 37.2
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 5.3e-99 366.3 737 36.9
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 2.2e-97 360.9 837 35.7
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 6.4e-97 359.4 757 37.6
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 1.2e-95 355.1 763 36.7
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 2.1e-95 354.4 453 46.8
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 1.8e-94 351.3 784 35.2
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 6.7e-94 349.4 779 35.7
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.1e-91 342.0 730 34.7
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 2.6e-90 337.4 691 36.9
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 5.8e-90 336.3 751 35.3
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 8.4e-89 332.4 734 36.6
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 5.5e-88 329.7 741 36.4
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 1.6e-87 328.2 874 32.7
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 7.9e-87 325.9 752 35.2
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 2.3e-86 324.3 746 35.8
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 4.3e-85 320.1 753 34.1
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 7.4e-85 319.3 755 33.5
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 6.3e-84 316.2 834 32.4
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 6.3e-84 316.2 750 35.5
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 8.2e-84 315.8 392 47.4
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 1.8e-83 314.7 745 33.6
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 4.1e-83 313.5 728 34.2
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.5e-82 311.6 746 35.5
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 1.3e-81 308.5 724 34.0
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 6.5e-81 306.2 633 38.4
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 8.5e-81 305.8 827 34.0
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 7.9e-79 299.3 737 34.6
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 2.3e-78 297.7 377 46.9
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 3.9e-78 297.0 774 32.0
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 1.1e-77 295.4 759 32.5
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 3.3e-77 293.9 923 30.2
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 4.8e-76 290.0 761 33.2
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 9.1e-75 285.8 777 32.4
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 4.5e-74 283.5 717 32.1
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 1.7e-73 281.6 740 33.8
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 3.8e-73 280.4 807 31.8
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 3.8e-73 280.4 775 32.5
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 6.5e-73 279.6 701 33.7
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 2.5e-72 277.7 705 34.2
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.7e-71 274.2 660 36.2
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 2.7e-71 274.2 693 33.9
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 3.0e-70 270.8 733 32.7
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 3.9e-70 270.4 712 31.9
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.3e-68 265.4 660 36.2
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 2.8e-68 264.2 749 32.7
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 1.8e-67 261.5 749 30.6
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 1.8e-67 261.5 747 34.0
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 4.1e-67 260.4 662 34.7
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 4.1e-67 260.4 718 31.5
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 2.6e-66 257.7 825 31.0
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.0e-65 255.8 764 32.1
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.7e-65 255.0 751 31.2
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 2.5e-64 251.1 721 31.2
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 3.2e-64 250.8 662 34.4
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 1.2e-63 248.8 742 31.1
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 1.2e-63 248.8 755 32.3
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 8.8e-62 242.7 753 31.6
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 2.6e-61 241.1 849 29.4
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 2.2e-57 228.0 838 27.3
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 6.5e-57 226.5 769 29.6
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 1.2e-55 222.2 365 40.3
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 2.1e-55 221.5 708 29.9
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 4.7e-55 220.3 656 30.5
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 6.1e-55 219.9 749 29.5
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.4e-54 218.8 751 29.8
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 3.0e-54 217.6 754 29.7
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 1.5e-53 215.3 704 29.3
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 2.0e-53 214.9 724 28.5
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 4.4e-53 213.8 697 31.3
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 9.7e-53 212.6 704 29.3
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 9.7e-53 212.6 950 26.5
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 1.1e-51 209.1 928 26.0
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 5.3e-51 206.8 811 27.1
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 5.3e-51 206.8 731 27.2
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 1.2e-50 205.7 635 31.0
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 3.5e-50 204.1 627 32.4
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 4.5e-50 203.8 725 28.4
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 5.9e-50 203.4 651 31.8
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 1.2e-47 195.7 935 26.1
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 1.5e-45 188.7 789 28.3
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 4.4e-45 187.2 729 29.1
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 7.5e-45 186.4 564 31.2
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 1.7e-44 185.3 733 27.6
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 1.8e-43 181.8 724 26.2
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 3.1e-43 181.0 738 27.4
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 3.5e-42 177.6 399 35.6
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 5.9e-42 176.8 756 27.8
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 1.3e-41 175.6 732 28.0
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 2.9e-41 174.5 761 27.2
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 5.0e-41 173.7 734 26.4
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 7.2e-40 169.9 758 26.0
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 4.7e-39 167.2 767 25.9
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 2.3e-38 164.9 732 25.5
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 2.3e-38 164.9 751 26.6
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 2.6e-37 161.4 502 30.1
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 4.4e-37 160.6 737 27.3
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 4.1e-35 154.1 417 31.7
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 7.0e-35 153.3 768 24.7
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 3.5e-34 151.0 553 27.3
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 4.5e-34 150.6 758 26.0
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 7.3e-32 143.3 762 26.2
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 2.1e-31 141.7 772 25.3
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 1.8e-30 138.7 717 25.2
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 1.7e-28 132.1 241 36.5
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.2e-26 125.9 613 26.8
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 3.3e-24 117.9 788 25.1
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 4.7e-23 114.0 110 55.5
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 6.2e-23 113.6 113 49.6
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 2.3e-22 111.7 763 22.5
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 1.2e-21 109.4 403 31.0
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 9.8e-21 106.3 179 39.7
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 1.6e-18 99.0 674 24.0
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 1.0e-17 96.3 111 46.8
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 1.1e-16 92.8 128 41.4
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 2.8e-15 88.2 662 24.3
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 3.6e-15 87.8 169 38.5
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 8.9e-14 83.2 148 35.8
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 2.6e-13 81.6 137 40.1
Haze_16456 Corylus avellana HOM05D004831 ORTHO05D003975 7.5e-13 80.1 118 44.1
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 2.9e-12 78.2 145 33.8
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 1.4e-11 75.9 88 46.6
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 1.9e-11 75.5 104 45.2
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 5.4e-11 73.9 85 44.7
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 8.6e-09 66.6 287 24.0
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 1.6e-07 62.4 229 24.9
CAN.G675.22 Capsicum annuum HOM05D004831 ORTHO05D003975 2.8e-07 61.6 42 76.2
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 3.6e-07 61.2 212 26.4
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 1.1e-06 59.7 116 34.5
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 6.8e-06 57.0 48 52.1


User provided reference genes

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