Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 6.3e-94 347.4 176 100.0
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.2e-92 343.2 176 98.9
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 3.4e-92 341.7 176 97.7
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 5.0e-75 284.6 153 92.2
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 2.7e-73 278.9 150 92.0
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 6.1e-73 277.7 150 90.0
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.4e-72 276.6 150 90.7
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 3.0e-72 275.4 150 90.0
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 5.2e-72 274.6 152 88.2
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 5.7e-71 271.2 150 87.3
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 6.3e-70 267.7 150 84.7
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 2.4e-69 265.8 150 85.3
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.1e-69 265.0 150 84.7
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 4.1e-69 265.0 150 85.3
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 4.1e-69 265.0 150 85.3
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 4.1e-69 265.0 150 84.0
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 5.4e-69 264.6 150 86.0
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 1.2e-68 263.5 150 85.3
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 1.2e-68 263.5 150 84.7
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 2.0e-68 262.7 150 84.7
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 2.7e-68 262.3 154 82.5
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 2.7e-68 262.3 150 82.7
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 5.9e-68 261.2 150 84.0
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 5.9e-68 261.2 150 83.3
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.0e-67 260.4 148 83.8
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.0e-67 260.4 150 84.7
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 1.3e-67 260.0 150 80.7
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.3e-67 260.0 150 82.0
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 1.7e-67 259.6 152 80.3
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.7e-67 259.6 150 82.7
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 1.7e-67 259.6 149 82.6
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.7e-67 259.6 145 84.8
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 2.3e-67 259.2 171 74.3
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 2.9e-67 258.8 150 81.3
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 2.9e-67 258.8 150 81.3
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.8e-67 258.5 150 83.3
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 3.8e-67 258.5 150 80.0
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 5.0e-67 258.1 150 81.3
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 5.0e-67 258.1 150 82.0
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.5e-67 257.7 150 82.0
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 8.6e-67 257.3 150 84.0
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 8.6e-67 257.3 150 79.3
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 1.1e-66 256.9 150 84.0
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.5e-66 256.5 150 83.3
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 1.5e-66 256.5 145 83.4
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 1.9e-66 256.1 150 80.7
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 1.9e-66 256.1 150 80.0
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 1.9e-66 256.1 150 81.3
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 2.5e-66 255.8 153 81.7
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 5.5e-66 254.6 150 81.3
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 5.5e-66 254.6 150 78.7
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 1.2e-65 253.4 150 80.0
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.6e-65 253.1 150 80.7
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 2.1e-65 252.7 150 76.7
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.8e-65 252.3 151 78.1
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 2.8e-65 252.3 150 78.7
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 2.8e-65 252.3 151 82.1
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 4.7e-65 251.5 153 80.4
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 4.7e-65 251.5 150 77.3
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 6.1e-65 251.1 152 77.6
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 6.1e-65 251.1 152 80.9
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 6.1e-65 251.1 152 80.9
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 8.0e-65 250.8 150 78.7
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 8.0e-65 250.8 165 73.9
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 8.0e-65 250.8 150 78.0
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 1.0e-64 250.4 150 77.3
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 1.0e-64 250.4 150 78.0
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.4e-64 250.0 150 80.0
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 1.4e-64 250.0 154 79.9
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 1.4e-64 250.0 152 80.3
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.8e-64 249.6 152 80.3
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 1.8e-64 249.6 150 79.3
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 4.0e-64 248.4 151 78.1
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 4.0e-64 248.4 150 77.3
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 5.2e-64 248.1 150 76.0
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 8.8e-64 247.3 151 78.1
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 8.8e-64 247.3 150 76.7
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.2e-63 246.9 150 77.3
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 1.2e-63 246.9 150 80.0
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.2e-63 246.9 151 76.8
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 1.2e-63 246.9 150 79.3
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.5e-63 246.5 149 77.2
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 1.5e-63 246.5 168 72.6
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.0e-63 246.1 152 80.3
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 2.0e-63 246.1 150 77.3
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 2.6e-63 245.7 154 72.7
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 2.6e-63 245.7 150 74.0
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 3.4e-63 245.4 166 76.5
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 4.4e-63 245.0 150 76.0
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 5.7e-63 244.6 150 79.3
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 5.7e-63 244.6 151 73.5
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 5.7e-63 244.6 150 77.3
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 7.5e-63 244.2 150 76.0
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 9.8e-63 243.8 168 68.5
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 9.8e-63 243.8 150 76.0
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 4.9e-62 241.5 150 78.0
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 8.3e-62 240.7 150 78.0
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 8.3e-62 240.7 150 76.7
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 1.4e-61 240.0 152 73.7
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 1.4e-61 240.0 152 72.4
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 1.4e-61 240.0 151 72.8
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 1.8e-61 239.6 152 73.0
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 1.8e-61 239.6 153 75.8
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 1.8e-61 239.6 150 72.0
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.1e-61 238.8 150 76.7
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 5.4e-61 238.0 152 73.0
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 7.0e-61 237.7 151 72.8
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 1.2e-60 236.9 154 71.4
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 1.6e-60 236.5 151 73.5
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 2.0e-60 236.1 150 76.0
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 3.5e-60 235.3 151 71.5
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 3.5e-60 235.3 151 71.5
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 4.5e-60 235.0 151 72.2
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 5.9e-60 234.6 150 72.0
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 3.8e-59 231.9 148 77.7
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 1.1e-58 230.3 150 70.7
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 9.5e-58 227.3 170 64.1
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 9.5e-58 227.3 149 73.2
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 9.5e-58 227.3 149 73.2
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.6e-57 226.5 150 76.0
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 4.7e-57 224.9 151 72.8
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.4e-56 223.4 151 71.5
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.9e-54 214.9 142 73.2
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 4.1e-53 211.8 125 83.2
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 2.0e-52 209.5 151 65.6
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 5.0e-51 204.9 119 84.9
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.0e-51 204.9 152 67.8
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 6.6e-51 204.5 149 61.7
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 5.6e-50 201.4 158 56.3
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 4.7e-49 198.4 121 80.2
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 6.4e-46 188.0 140 65.0
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 9.2e-45 184.1 149 54.4
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 2.0e-44 183.0 108 77.8
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 6.6e-43 177.9 108 75.0
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 5.2e-40 168.3 178 53.9
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.4e-37 159.5 95 83.2
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 5.4e-37 158.3 154 48.7
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.7e-30 136.7 99 68.7
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 4.9e-30 135.2 157 43.3
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 6.4e-30 134.8 120 59.2
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 5.4e-29 131.7 72 81.9
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 1.6e-28 130.2 72 77.8
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.1e-28 129.8 75 82.7
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 2.1e-28 129.8 75 81.3
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.9e-26 123.2 75 78.7
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 4.3e-26 122.1 75 81.3
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 2.8e-25 119.4 75 74.7
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 6.2e-25 118.2 89 67.4
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.0e-23 113.2 58 84.5
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.0e-23 113.2 58 84.5
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 9.9e-23 110.9 160 38.1
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 2.9e-14 82.8 48 89.6
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 4.8e-09 65.5 42 73.8


User provided reference genes

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