Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 1.7e-267 926.0 715 100.0
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 1.9e-253 879.4 716 96.9
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 1.5e-223 780.0 678 93.7
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 4.4e-178 629.0 685 69.8
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 4.7e-172 609.0 726 65.6
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 3.9e-158 562.8 733 73.5
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 4.0e-139 499.6 723 68.6
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 1.4e-94 351.7 708 42.8
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 2.4e-91 340.9 684 42.5
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 3.8e-89 333.6 679 45.5
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 2.8e-84 317.4 679 39.3
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 2.4e-83 314.3 706 44.1
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 7.7e-82 309.3 721 47.7
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 1.5e-80 305.1 723 47.3
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 4.4e-77 293.5 522 44.4
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 5.7e-77 293.1 489 45.4
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 1.3e-76 292.0 532 45.7
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 1.6e-74 285.0 623 44.9
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 3.5e-74 283.9 722 40.7
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.3e-73 282.0 721 49.4
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 2.5e-72 277.7 617 55.1
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 2.7e-71 274.2 692 40.8
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 4.7e-71 273.5 715 47.0
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 8.0e-71 272.7 819 44.7
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 3.0e-70 270.8 708 41.7
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 9.8e-69 265.8 755 44.0
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 1.7e-68 265.0 707 40.0
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 3.5e-66 257.3 523 36.1
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 1.7e-65 255.0 515 41.7
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 1.5e-64 251.9 718 47.9
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 1.9e-64 251.5 518 35.7
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.9e-64 251.5 557 35.5
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 1.9e-64 251.5 703 48.1
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 2.5e-64 251.1 519 45.5
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 2.5e-64 251.1 717 38.4
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 4.2e-64 250.4 561 34.9
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 5.5e-64 250.0 735 40.4
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 7.2e-64 249.6 568 52.6
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 5.2e-62 243.4 536 42.5
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 1.5e-61 241.9 763 38.8
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 1.7e-60 238.4 513 41.1
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 3.7e-60 237.3 674 38.9
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 3.7e-60 237.3 732 47.4
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 1.8e-59 235.0 715 46.6
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 1.8e-59 235.0 502 41.6
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 7.8e-58 229.6 714 38.5
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 2.5e-56 224.6 569 44.5
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 2.5e-56 224.6 512 44.9
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.2e-55 222.2 723 44.1
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 1.6e-55 221.9 708 45.5
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 8.0e-55 219.5 692 42.2
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.2e-53 215.7 699 41.9
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 9.8e-53 212.6 719 42.1
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 1.3e-52 212.2 656 43.3
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 1.3e-52 212.2 523 31.7
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 1.3e-52 212.2 675 46.5
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 8.3e-52 209.5 714 44.3
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 1.9e-51 208.4 529 38.2
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 7.0e-51 206.5 719 40.9
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 9.2e-51 206.1 435 40.0
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 3.5e-50 204.1 716 43.2
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 6.0e-50 203.4 658 34.0
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 6.0e-50 203.4 715 47.1
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 7.8e-50 203.0 671 34.7
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.0e-49 202.6 718 47.4
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 1.5e-48 198.7 715 43.6
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 5.6e-48 196.8 389 42.7
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 7.3e-48 196.4 422 41.9
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 1.6e-47 195.3 296 42.2
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 4.7e-47 193.7 575 38.8
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 8.0e-47 193.0 513 42.1
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 4.0e-46 190.7 388 43.8
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 5.2e-46 190.3 711 37.1
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 6.8e-46 189.9 661 29.8
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 8.9e-46 189.5 514 36.8
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 7.5e-45 186.4 415 36.6
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.7e-44 185.3 711 35.0
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 4.9e-44 183.7 523 36.1
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 1.1e-43 182.6 761 32.3
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 1.9e-43 181.8 684 36.4
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 2.4e-43 181.4 518 38.4
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 2.7e-42 177.9 474 36.7
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 4.6e-42 177.2 732 35.9
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 4.6e-42 177.2 527 39.7
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 7.8e-42 176.4 388 40.2
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 1.7e-41 175.3 676 40.1
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 5.1e-41 173.7 716 45.8
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 7.3e-40 169.9 411 35.5
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 7.3e-40 169.9 658 36.2
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 1.6e-39 168.7 709 34.8
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 2.8e-39 167.9 363 42.7
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 2.8e-39 167.9 363 42.7
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 2.8e-39 167.9 363 42.7
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 2.8e-39 167.9 720 37.2
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.3e-38 164.9 275 44.0
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 6.8e-38 163.3 495 45.1
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 4.4e-37 160.6 490 36.7
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 1.3e-36 159.1 686 39.1
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 3.7e-36 157.5 422 40.3
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 8.3e-36 156.4 417 37.4
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 2.4e-35 154.8 425 39.8
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 3.9e-33 147.5 609 44.5
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 5.1e-33 147.1 717 38.2
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 5.1e-33 147.1 717 38.2
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 1.5e-32 145.6 309 48.2
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 1.9e-32 145.2 716 39.8
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 3.3e-32 144.4 459 32.2
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 4.3e-32 144.1 166 50.6
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 9.5e-32 142.9 477 31.0
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 2.8e-31 141.4 520 33.7
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 3.6e-31 141.0 709 37.8
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 3.6e-31 141.0 574 31.9
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 5.2e-30 137.1 522 34.9
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 2.0e-29 135.2 659 32.5
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 5.8e-29 133.7 721 38.6
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 9.9e-29 132.9 684 43.4
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 6.4e-28 130.2 461 34.7
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 1.1e-27 129.4 483 34.8
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.1e-27 129.4 722 43.8
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.9e-27 128.6 409 25.9
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 5.4e-27 127.1 432 26.4
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 6.0e-26 123.6 379 39.3
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 1.0e-25 122.9 236 36.4
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 1.3e-25 122.5 501 37.7
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 1.3e-25 122.5 679 27.1
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 3.9e-25 120.9 407 36.1
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 5.1e-25 120.6 252 35.7
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 1.1e-24 119.4 426 38.3
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 1.6e-23 115.5 377 36.9
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 1.6e-23 115.5 747 29.6
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 3.6e-23 114.4 736 34.9
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 2.1e-18 98.6 149 40.3
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 2.1e-18 98.6 376 32.2
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 6.0e-18 97.1 404 26.7
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 1.7e-17 95.5 354 33.1
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 2.3e-17 95.1 497 31.4
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 5.1e-17 94.0 115 48.7
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 7.3e-16 90.1 610 26.7
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 6.2e-15 87.0 380 40.0
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 1.1e-11 76.3 239 25.5
A01p38100 Brassica napus HOM05D015723 ORTHO05D003275 1.0e-09 69.7 363 25.1
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.5e-08 65.9 113 39.8
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.6e-07 62.4 577 20.6
MD09G1213300 Malus domestica HOM05D004642 ORTHO05D005466 4.8e-07 60.8 110 38.2


User provided reference genes

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