Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g039030 Solanum pennellii HOM05D007609 ORTHO05D009539 1.0e-40 169.5 76 100.0
PGSC0003DMG400005605 Solanum tuberosum HOM05D007609 ORTHO05D009539 2.4e-34 148.3 76 86.8
Solyc03g120155.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 3.2e-34 147.9 78 89.7
Nitab4.5_0005851g0050 Nicotiana tabacum HOM05D007609 ORTHO05D009539 1.5e-20 102.4 76 64.5
PGSC0003DMG400005604 Solanum tuberosum HOM05D007609 ORTHO05D009539 6.6e-16 87.0 76 60.5
Migut.D01028 Erythranthe guttata HOM05D007609 ORTHO05D009539 2.0e-12 75.5 86 41.9
Solyc03g120160.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 4.4e-12 74.3 75 53.3
Nitab4.5_0000351g0200 Nicotiana tabacum HOM05D007609 ORTHO05D009539 5.8e-12 73.9 78 50.0
Sopen03g039040 Solanum pennellii HOM05D007609 ORTHO05D009539 5.8e-12 73.9 71 49.3
Peaxi162Scf00207g00095 Petunia axillaris HOM05D007609 ORTHO05D009539 7.6e-12 73.6 81 45.7
Peaxi162Scf00015g00416 Petunia axillaris HOM05D007609 ORTHO05D009539 9.9e-12 73.2 81 46.9
PGSC0003DMG400016536 Solanum tuberosum HOM05D007609 ORTHO05D009539 4.9e-11 70.9 72 47.2
Dinv38045 Davidia involucrata HOM05D007609 ORTHO05D009539 8.4e-11 70.1 85 47.1
Rhsim08G0221700 Rhododendron simsii HOM05D007609 ORTHO05D009539 1.1e-10 69.7 80 45.0
AUR62016446 Chenopodium quinoa HOM05D007609 ORTHO05D009539 1.9e-10 68.9 84 46.4
Lsat_1_v5_gn_4_103641 Lactuca sativa HOM05D007609 ORTHO05D009539 3.2e-10 68.2 52 57.7
Manes.03G019500 Manihot esculenta HOM05D007609 ORTHO05D009539 3.2e-10 68.2 78 43.6
Solyc06g066700.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 9.2e-10 66.6 33 84.8
DCAR_023052 Daucus carota HOM05D007609 ORTHO05D009539 1.2e-09 66.2 75 45.3
Nitab4.5_0003351g0110 Nicotiana tabacum HOM05D007609 ORTHO05D009539 3.5e-09 64.7 79 46.8
Sopen06g024990 Solanum pennellii HOM05D007609 ORTHO05D009539 3.5e-09 64.7 75 46.7
TAR383G0714 Trochodendron aralioides HOM05D007609 ORTHO05D009539 1.0e-08 63.2 41 68.3
Cpa.g.sc451.1 Carica papaya HOM05D007609 ORTHO05D009539 2.3e-08 62.0 38 68.4
Ciclev10010038m.g Citrus clementina HOM05D007609 ORTHO05D009539 2.3e-08 62.0 38 68.4
Gohir.D07G005100 Gossypium hirsutum HOM05D007609 ORTHO05D009539 3.0e-08 61.6 49 53.1
Gohir.A07G006801 Gossypium hirsutum HOM05D007609 ORTHO05D009539 3.9e-08 61.2 38 65.8
Gorai.001G004700 Gossypium raimondii HOM05D007609 ORTHO05D009539 3.9e-08 61.2 38 65.8
Ah.14g081870 Amaranthus hybridus HOM05D007609 ORTHO05D009539 5.1e-08 60.8 38 57.9
CSS0012617 Camellia sinensis var. sinensis HOM05D007609 ORTHO05D009539 6.6e-08 60.5 36 66.7
Eucgr.C03849 Eucalyptus grandis HOM05D007609 ORTHO05D009539 6.6e-08 60.5 34 64.7
Gohir.A06G061700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 6.6e-08 60.5 42 59.5
Sabra18G0066900 Salix brachista HOM05D007609 ORTHO05D009539 6.6e-08 60.5 38 65.8
Hma1.2p1_0092F.1_g046650 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 8.7e-08 60.1 35 65.7
Thecc.09G111700 Theobroma cacao HOM05D007609 ORTHO05D009539 8.7e-08 60.1 39 66.7
ECA232G3029 Erigeron canadensis HOM05D007609 ORTHO05D009539 1.5e-07 59.3 30 70.0
CsaV3_7G033200 Cucumis sativus L. HOM05D010933 ORTHO05D013136 1.9e-07 58.9 70 37.1
vmacro18908 Vaccinium macrocarpon HOM05D007609 ORTHO05D009539 1.9e-07 58.9 42 57.1
Aqoxy7G01699 Aquilegia oxysepala HOM05D007609 ORTHO05D009539 2.5e-07 58.5 43 55.8
MELO3C024233.2 Cucumis melo HOM05D010933 ORTHO05D013136 2.5e-07 58.5 45 51.1
QL05p023464 Quercus lobata HOM05D007609 ORTHO05D009539 2.5e-07 58.5 49 57.1
Sed0016972 Sechium edule HOM05D007609 ORTHO05D009539 2.5e-07 58.5 38 55.3
QL10p054851 Quercus lobata HOM05D007609 ORTHO05D009539 3.3e-07 58.2 49 55.1
Sc18g0001160 Simmondsia chinensis HOM05D007609 ORTHO05D009539 4.3e-07 57.8 33 69.7
Gorai.010G069800 Gossypium raimondii HOM05D007609 ORTHO05D009539 5.6e-07 57.4 30 73.3
Potri.006G159300 Populus trichocarpa HOM05D007609 ORTHO05D009539 5.6e-07 57.4 51 45.1
DCAR_028717 Daucus carota HOM05D007609 ORTHO05D009539 9.6e-07 56.6 27 74.1
Gohir.D06G060000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 9.6e-07 56.6 26 80.8
Phvul.004G162600 Phaseolus vulgaris HOM05D007609 ORTHO05D009539 9.6e-07 56.6 53 47.2
Potri.018G078900 Populus trichocarpa HOM05D007609 ORTHO05D009539 9.6e-07 56.6 43 51.2
TAR626G0143 Trochodendron aralioides HOM05D007609 ORTHO05D025968 9.6e-07 56.6 57 50.9
unitig_899.g14776 Utricularia gibba HOM05D007609 ORTHO05D009539 9.6e-07 56.6 43 51.2
Gohir.D08G261700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 1.2e-06 56.2 42 52.4
Gorai.004G279800 Gossypium raimondii HOM05D007609 ORTHO05D009539 1.2e-06 56.2 42 52.4
Hma1.2p1_0018F.1_g013450 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 1.2e-06 56.2 24 83.3
Manes.16G116800 Manihot esculenta HOM05D007609 ORTHO05D009539 1.6e-06 55.8 28 71.4
SGA_v2.0_scaffold5G02584 Striga asiatica HOM05D007609 ORTHO05D009539 1.6e-06 55.8 76 38.2
Eucgr.F03018 Eucalyptus grandis HOM05D007609 ORTHO05D009539 2.1e-06 55.5 80 36.2
Gohir.A08G241000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.1e-06 55.5 33 66.7
HanXRQChr10g0317871 Helianthus annuus HOM05D007609 ORTHO05D009539 2.1e-06 55.5 76 40.8
Sp1g38930 Schrenkiella parvula HOM05D010933 ORTHO05D013136 2.8e-06 55.1 33 60.6
Nn2g11764 Nelumbo nucifera HOM05D007609 ORTHO05D009539 3.6e-06 54.7 31 61.3
A08p02170 Brassica napus HOM05D010933 ORTHO05D013136 4.7e-06 54.3 36 58.3
C03p90620 Brassica napus HOM05D010933 ORTHO05D013136 4.7e-06 54.3 36 58.3
BolC3t21384H Brassica oleracea HOM05D010933 ORTHO05D013136 4.7e-06 54.3 36 58.3
Ca_25525_v3 Cicer arietinum L. HOM05D007609 ORTHO05D009539 4.7e-06 54.3 44 50.0
Glyma.07G087100 Glycine max HOM05D007609 ORTHO05D009539 4.7e-06 54.3 42 52.4
Lj2g0010717 Lotus japonicus HOM05D007609 ORTHO05D009539 4.7e-06 54.3 42 54.8
Prupe.7G229700 Prunus persica HOM05D007609 ORTHO05D009539 4.7e-06 54.3 75 38.7
BcaC01g01321 Brassica carinata HOM05D010933 ORTHO05D013136 6.2e-06 53.9 36 58.3
BcaC01g01322 Brassica carinata HOM05D010933 ORTHO05D013136 6.2e-06 53.9 36 58.3
BraA08t32264Z Brassica rapa HOM05D010933 ORTHO05D013136 6.2e-06 53.9 36 58.3
AUR62021516 Chenopodium quinoa HOM05D007609 ORTHO05D009539 6.2e-06 53.9 23 82.6
Atru.chr1.3276 Acer truncatum HOM05D007609 ORTHO05D009539 8.1e-06 53.5 27 70.4
Atru.chr7.1339 Acer truncatum HOM05D007609 ORTHO05D009539 8.1e-06 53.5 28 82.1
CiPaw.01G239000 Carya illinoinensis HOM05D007609 ORTHO05D009539 8.1e-06 53.5 45 51.1
AUR62011005 Chenopodium quinoa HOM05D007609 ORTHO05D009539 8.1e-06 53.5 23 82.6
Haze_25706 Corylus avellana HOM05D007609 ORTHO05D009539 8.1e-06 53.5 39 64.1
Migut.I00869 Erythranthe guttata HOM05D007609 ORTHO05D009539 8.1e-06 53.5 26 69.2
Lsat_1_v5_gn_5_101501 Lactuca sativa HOM05D007609 ORTHO05D009539 8.1e-06 53.5 40 57.5


User provided reference genes

Program Settings