Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g039000 Solanum pennellii HOM05D006908 ORTHO05D008662 6.4e-210 733.8 359 100.0
PGSC0003DMG400005687 Solanum tuberosum HOM05D006908 ORTHO05D008662 4.9e-186 654.4 341 94.4
Solyc03g120130.4 Solanum lycopersicum HOM05D006908 ORTHO05D008662 1.1e-182 643.3 353 91.2
CAN.G438.72 Capsicum annuum HOM05D006908 ORTHO05D008662 1.2e-168 596.7 340 88.5
Nitab4.5_0002308g0060 Nicotiana tabacum HOM05D006908 ORTHO05D008662 9.3e-161 570.5 351 83.2
Nitab4.5_0000671g0150 Nicotiana tabacum HOM05D006908 ORTHO05D008662 2.8e-149 532.3 361 75.6
Peaxi162Scf00015g00453 Petunia axillaris HOM05D006908 ORTHO05D008662 3.9e-135 485.3 319 78.4
Dinv38042 Davidia involucrata HOM05D006908 ORTHO05D008662 1.7e-114 416.8 328 63.1
Lj5C59T9 Lonicera japonica HOM05D006908 ORTHO05D008662 1.6e-112 410.2 320 64.1
Hma1.2p1_0323F.1_g125120 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 4.0e-111 405.6 327 62.4
MD17G1194300 Malus domestica HOM05D006908 ORTHO05D008662 4.0e-111 405.6 343 61.2
CiPaw.01G238600 Carya illinoinensis HOM05D006908 ORTHO05D008662 2.0e-110 403.3 340 60.9
Oeu063957.2 Olea europaea HOM05D006908 ORTHO05D008662 2.0e-110 403.3 319 64.6
Actinidia01807 Actinidia chinensis HOM05D006908 ORTHO05D008662 4.4e-110 402.1 323 62.8
QL05p023344 Quercus lobata HOM05D006908 ORTHO05D008662 5.7e-110 401.7 327 62.1
SalBow2G2262 Salvia bowleyana HOM05D006908 ORTHO05D008662 9.8e-110 401.0 325 62.5
Rhsim08G0222000 Rhododendron simsii HOM05D006908 ORTHO05D008662 1.3e-109 400.6 340 61.5
DCAR_023055 Daucus carota HOM05D006908 ORTHO05D008662 8.3e-109 397.9 323 63.5
MSTRG.11073 Avicennia marina HOM05D006908 ORTHO05D008662 1.4e-108 397.1 329 63.2
Eucgr.J02986 Eucalyptus grandis HOM05D006908 ORTHO05D008662 1.4e-108 397.1 322 62.7
GSVIVG01017098001 Vitis vinifera HOM05D006908 ORTHO05D008662 3.1e-108 396.0 326 60.7
Cc04_g03340 Coffea canephora HOM05D006908 ORTHO05D008662 5.4e-108 395.2 350 60.6
Haze_16403 Corylus avellana HOM05D006908 ORTHO05D008662 1.6e-107 393.7 329 60.5
vmacro18903 Vaccinium macrocarpon HOM05D006908 ORTHO05D008662 3.8e-106 389.0 376 56.6
ClCG07G013040 Citrullus lanatus HOM05D006908 ORTHO05D008662 8.6e-106 387.9 337 60.2
Thecc.06G089400 Theobroma cacao HOM05D006908 ORTHO05D008662 9.5e-105 384.4 339 57.8
PSO782G4818 Papaver somniferum HOM05D006908 ORTHO05D008662 1.2e-104 384.0 322 63.4
TAR626G0624 Trochodendron aralioides HOM05D006908 ORTHO05D008662 1.2e-104 384.0 349 59.9
COL.COLO4_30388 Corchorus olitorius HOM05D006908 ORTHO05D008662 1.6e-104 383.6 321 59.8
Sabra01G0145800 Salix brachista HOM05D006908 ORTHO05D008662 1.6e-104 383.6 336 58.9
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 2.1e-104 383.3 330 59.1
FAN09G3067 Fragaria x ananassa HOM05D006908 ORTHO05D008662 3.6e-104 382.5 334 60.2
HanXRQChr02g0032801 Helianthus annuus HOM05D006908 ORTHO05D008662 3.6e-104 382.5 322 60.2
Atru.chr1.3281 Acer truncatum HOM05D006908 ORTHO05D008662 1.8e-103 380.2 344 57.6
FvH4_6g31280 Fragaria vesca HOM05D006908 ORTHO05D008662 2.3e-103 379.8 332 59.3
Nn8g39204 Nelumbo nucifera HOM05D006908 ORTHO05D008662 2.3e-103 379.8 359 59.1
Gorai.006G098400 Gossypium raimondii HOM05D006908 ORTHO05D008662 3.0e-103 379.4 321 59.2
FAN05G1986 Fragaria x ananassa HOM05D006908 ORTHO05D008662 4.0e-103 379.0 333 60.1
Ah.01g005440 Amaranthus hybridus HOM05D006908 ORTHO05D008662 5.2e-103 378.6 334 58.1
EL10Ac9g22006 Beta vulgaris HOM05D006908 ORTHO05D008662 2.0e-102 376.7 324 59.3
CsaV3_3G025130 Cucumis sativus L. HOM05D006908 ORTHO05D008662 3.4e-102 375.9 335 58.8
ECA247G1365 Erigeron canadensis HOM05D006908 ORTHO05D008662 7.5e-102 374.8 329 59.9
PGR102G2040 Punica granatum HOM05D006908 ORTHO05D008662 7.5e-102 374.8 321 60.4
RcHm_v2.0_Chr2g0138011 Rosa chinensis HOM05D006908 ORTHO05D008662 9.8e-102 374.4 334 59.9
MELO3C012958.2 Cucumis melo HOM05D006908 ORTHO05D008662 2.8e-101 372.9 336 57.7
Sc10g0007370 Simmondsia chinensis HOM05D006908 ORTHO05D008662 1.1e-100 370.9 332 57.2
CSS0010187 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 5.4e-100 368.6 289 63.3
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 7.0e-100 368.2 337 57.3
Duzib160G0703 Durio zibethinus HOM05D006908 ORTHO05D008662 3.5e-99 365.9 322 58.1
PSO063G2605 Papaver somniferum HOM05D006908 ORTHO05D008662 3.5e-99 365.9 323 60.7
Sed0021689 Sechium edule HOM05D006908 ORTHO05D008662 2.3e-98 363.2 340 56.8
TPR.G37174 Trifolium pratense HOM05D006908 ORTHO05D008662 3.9e-98 362.5 340 57.1
Lj3g0017668 Lotus japonicus HOM05D006908 ORTHO05D008662 8.6e-98 361.3 342 55.8
Lalb_Chr22g0351301 Lupinus albus HOM05D006908 ORTHO05D008662 1.1e-97 360.9 325 58.2
Ciclev10025928m.g Citrus clementina HOM05D006908 ORTHO05D008662 5.6e-97 358.6 355 54.1
Manes.11G045900 Manihot esculenta HOM05D006908 ORTHO05D008662 1.6e-96 357.1 324 57.1
Medtr2g102040 Medicago truncatula HOM05D006908 ORTHO05D008662 1.6e-96 357.1 338 56.5
Prupe.3G070300 Prunus persica HOM05D006908 ORTHO05D008662 4.7e-96 355.5 328 58.2
Ca_01120_v3 Cicer arietinum L. HOM05D006908 ORTHO05D008662 2.3e-95 353.2 353 53.5
VMungo1080G1808 Vigna mungo HOM05D006908 ORTHO05D008662 8.9e-95 351.3 326 56.1
Glyma.15G014900 Glycine max HOM05D006908 ORTHO05D008662 3.4e-94 349.4 330 55.5
Phvul.005G170700 Phaseolus vulgaris HOM05D006908 ORTHO05D008662 4.4e-94 349.0 337 55.8
Potri.001G181200 Populus trichocarpa HOM05D006908 ORTHO05D008662 1.3e-93 347.4 276 63.0
Hund06614 Selenicereus undatus HOM05D006908 ORTHO05D008662 2.2e-93 346.7 324 57.4
unitig_52.g17450 Utricularia gibba HOM05D006908 ORTHO05D008662 3.7e-93 345.9 322 56.2
AUR62042927 Chenopodium quinoa HOM05D006908 ORTHO05D008662 8.3e-93 344.7 345 55.1
arahy.Tifrunner.gnm1.ann1.0IDI1A Arachis hypogaea HOM05D006908 ORTHO05D008662 1.9e-92 343.6 325 56.0
arahy.Tifrunner.gnm1.ann1.UK934I Arachis hypogaea HOM05D006908 ORTHO05D008662 1.9e-92 343.6 325 56.0
Gohir.D09G082700 Gossypium hirsutum HOM05D006908 ORTHO05D008662 3.2e-92 342.8 321 55.5
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 7.8e-91 338.2 322 53.7
Aqoxy7G01689 Aquilegia oxysepala HOM05D006908 ORTHO05D008662 1.3e-90 337.4 344 54.4
CDE02G0011 Ceratophyllum demersum HOM05D006908 ORTHO05D008662 1.9e-89 333.6 322 55.9
Sp5g35850 Schrenkiella parvula HOM05D006908 ORTHO05D008662 1.9e-89 333.6 325 52.3
Os06g0639300 Oryza sativa ssp. japonica HOM05D006908 ORTHO05D008662 5.6e-89 332.0 335 54.0
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 2.0e-86 323.6 327 52.0
TWI75G1463 Tripterygium wilfordii HOM05D006908 ORTHO05D008662 4.4e-86 322.4 322 54.7
Gohir.A09G082800 Gossypium hirsutum HOM05D006908 ORTHO05D008662 6.4e-85 318.5 326 51.8
Aa31LG4G230 Aethionema arabicum HOM05D006908 ORTHO05D008662 3.2e-84 316.2 350 49.4
SEGI_13943 Sequoiadendron giganteum HOM05D006908 ORTHO05D008662 7.0e-84 315.1 346 48.0
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 9.2e-84 314.7 322 52.5
AT1G79915 Arabidopsis thaliana HOM05D006908 ORTHO05D008662 1.2e-83 314.3 323 51.4
Psat5g298720 Pisum sativum HOM05D006908 ORTHO05D008662 2.1e-83 313.5 298 54.0
THA.LOC104812520 Tarenaya hassleriana HOM05D006908 ORTHO05D008662 3.5e-83 312.8 341 49.6
Zm00001eb275430 Zea mays HOM05D006908 ORTHO05D008662 7.8e-83 311.6 333 50.8
Carub.0002s2758 Capsella rubella HOM05D006908 ORTHO05D008662 1.0e-82 311.2 330 50.3
CARHR074570 Cardamine hirsuta HOM05D006908 ORTHO05D008662 1.0e-82 311.2 331 50.2
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 1.3e-82 310.8 360 47.5
Thhalv10018901m.g Eutrema salsugineum HOM05D006908 ORTHO05D008662 1.3e-82 310.8 330 50.6
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 3.9e-82 309.3 353 48.2
Hma1.2p1_0323F.1_g125130 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 2.5e-81 306.6 327 51.7
BraA07t32051Z Brassica rapa HOM05D006908 ORTHO05D008662 2.1e-80 303.5 341 49.3
Cfa002075 Carpinus fangiana HOM05D006908 ORTHO05D008662 8.1e-80 301.6 280 56.8
AUR62016450 Chenopodium quinoa HOM05D006908 ORTHO05D008662 3.4e-78 296.2 300 54.0
ATR0602G186 Amborella trichopoda HOM05D006908 ORTHO05D008662 8.3e-77 291.6 251 56.6
Mapoly0072s0004 Marchantia polymorpha HOM05D006908 ORTHO05D008662 4.6e-75 285.8 347 46.4
SHI10939 Sapria himalayana HOM05D006908 ORTHO05D008662 6.2e-72 275.4 257 55.3
MBI15_g13424_MAGBIO Magnolia biondii HOM05D006908 ORTHO05D008662 2.4e-68 263.5 269 55.0
A07p45490 Brassica napus HOM05D006908 ORTHO05D008662 6.0e-67 258.8 386 42.0
Cpa.g.sc0.185 Carica papaya HOM05D006908 ORTHO05D008662 8.7e-66 255.0 219 58.4
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 3.6e-64 249.6 334 44.3
AUR62033073 Chenopodium quinoa HOM05D006908 ORTHO05D008662 4.8e-64 249.2 286 50.7
CSS0029579 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 9.0e-63 245.0 188 63.3
Lsat_1_v5_gn_1_35121 Lactuca sativa HOM05D006908 ORTHO05D008662 1.4e-60 237.7 215 58.6
Pp3c16_8290 Physcomitrium patens HOM05D006908 ORTHO05D008662 7.1e-60 235.3 353 38.8
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 2.6e-54 216.9 324 38.9
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 1.3e-45 188.0 330 37.9
FAN02G3381 Fragaria x ananassa HOM05D006908 ORTHO05D008662 5.1e-42 176.0 238 44.5
SGA_v2.0_scaffold37G14828 Striga asiatica HOM05D006908 ORTHO05D008662 6.7e-42 175.6 144 64.6
C09p24020 Brassica napus HOM05D006908 ORTHO05D008662 8.7e-34 148.7 183 44.8
SMO347G0515 Selaginella moellendorffii HOM05D006908 ORTHO05D008662 1.5e-33 147.9 211 43.1
Actinidia32749 Actinidia chinensis HOM05D006908 ORTHO05D008662 2.2e-21 107.5 78 70.5
AL2G41640 Arabidopsis lyrata HOM05D006908 ORTHO05D008662 1.9e-20 104.4 150 41.3
BolC9t55322H Brassica oleracea HOM05D006908 ORTHO05D008662 3.3e-17 93.6 92 53.3
Cpa.g.sc41.12 Carica papaya HOM05D006908 ORTHO05D008662 1.3e-16 91.7 85 54.1
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 4.4e-09 66.6 167 27.5
FAN14G1268 Fragaria x ananassa HOM05D006908 ORTHO05D008662 9.7e-09 65.5 71 49.3
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 1.7e-08 64.7 145 33.1
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 4.8e-08 63.2 112 29.5
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 4.8e-08 63.2 162 30.2
Sed0014482 Sechium edule HOM05D002956 ORTHO05D008031 4.8e-08 63.2 115 31.3
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 8.2e-08 62.4 147 29.9
ClCG01G019540 Citrullus lanatus HOM05D005677 ORTHO05D006966 1.4e-07 61.6 243 29.2
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 1.4e-07 61.6 156 25.6
EL10Ac6g15168 Beta vulgaris HOM05D006745 ORTHO05D008449 1.8e-07 61.2 197 30.5
FAN26G2780 Fragaria x ananassa HOM05D005677 ORTHO05D006966 1.8e-07 61.2 228 28.9
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 1.8e-07 61.2 112 28.6
Gorai.001G135400 Gossypium raimondii HOM05D002956 ORTHO05D008031 1.8e-07 61.2 112 28.6
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 1.8e-07 61.2 200 27.5
MD00G1134600 Malus domestica HOM05D002956 ORTHO05D008031 1.8e-07 61.2 112 32.1
BraA07t30623Z Brassica rapa HOM05D000058 ORTHO05D000255 2.4e-07 60.8 274 25.5
Hma1.2p1_0224F.1_g094650 Hydrangea macrophylla HOM05D005677 ORTHO05D006966 2.4e-07 60.8 222 28.4
Zm00001eb329010 Zea mays HOM05D002956 ORTHO05D008031 2.4e-07 60.8 114 31.6
Cpa.g.sc41.10 Carica papaya HOM05D006908 ORTHO05D008662 4.1e-07 60.1 73 46.6
FvH4_1g13310 Fragaria vesca HOM05D005677 ORTHO05D006966 4.1e-07 60.1 228 28.1
HanXRQChr12g0380421 Helianthus annuus HOM05D002956 ORTHO05D008031 5.3e-07 59.7 115 33.0
ECA233G6038 Erigeron canadensis HOM05D002956 ORTHO05D008031 7.0e-07 59.3 112 31.2
Psat5g191880 Pisum sativum HOM05D002956 ORTHO05D008031 7.0e-07 59.3 114 28.9
AT2G26810 Arabidopsis thaliana HOM05D002956 ORTHO05D008031 9.1e-07 58.9 113 31.0
Ca_25980_v3 Cicer arietinum L. HOM05D002956 ORTHO05D008031 9.1e-07 58.9 113 28.3
HanXRQChr09g0261461 Helianthus annuus HOM05D005677 ORTHO05D006966 9.1e-07 58.9 236 25.8
Prupe.4G260400 Prunus persica HOM05D002956 ORTHO05D008031 9.1e-07 58.9 152 27.6
SMO351G0211 Selaginella moellendorffii HOM05D001602 ORTHO05D001470 9.1e-07 58.9 167 27.5
MSTRG.12436 Avicennia marina HOM05D002956 ORTHO05D008031 1.2e-06 58.5 113 31.0
Eucgr.J00675 Eucalyptus grandis HOM05D002956 ORTHO05D008031 1.2e-06 58.5 113 31.0
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 1.2e-06 58.5 166 26.5
Manes.02G137300 Manihot esculenta HOM05D002956 ORTHO05D008031 1.2e-06 58.5 166 26.5
SEGI_16522 Sequoiadendron giganteum HOM05D005677 ORTHO05D006966 1.2e-06 58.5 140 33.6
Thecc.09G246000 Theobroma cacao HOM05D002956 ORTHO05D008031 1.2e-06 58.5 112 28.6
Potri.009G068400 Populus trichocarpa HOM05D002956 ORTHO05D008031 1.6e-06 58.2 166 25.3
Cpa.g.sc34.183 Carica papaya HOM05D002956 ORTHO05D008031 2.0e-06 57.8 92 32.6
AL6G39610 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 2.6e-06 57.4 205 26.8
CSS0006448 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D008031 2.6e-06 57.4 112 30.4
RcHm_v2.0_Chr2g0101571 Rosa chinensis HOM05D005677 ORTHO05D006966 2.6e-06 57.4 226 27.0
AagrBONN_evm.TU.Sc2ySwM_228.3973 Anthoceros agrestis HOM05D002956 ORTHO05D008031 3.5e-06 57.0 108 31.5
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 3.5e-06 57.0 198 27.3
FAN19G0062 Fragaria x ananassa HOM05D005677 ORTHO05D006966 3.5e-06 57.0 227 26.0
Pp3c3_3170 Physcomitrium patens HOM05D006745 ORTHO05D008449 3.5e-06 57.0 162 26.5
AL4G20000 Arabidopsis lyrata HOM05D002956 ORTHO05D008031 4.5e-06 56.6 113 29.2
CARHR160400 Cardamine hirsuta HOM05D005677 ORTHO05D006966 4.5e-06 56.6 150 32.0
AUR62004051 Chenopodium quinoa HOM05D005677 ORTHO05D006966 4.5e-06 56.6 181 30.9
Ciclev10018203m.g Citrus clementina HOM05D002956 ORTHO05D008031 5.9e-06 56.2 96 34.4
THA.LOC104821292 Tarenaya hassleriana HOM05D005677 ORTHO05D006966 5.9e-06 56.2 156 29.5
AUR62003702 Chenopodium quinoa HOM05D006745 ORTHO05D008449 7.7e-06 55.8 209 28.2
COL.COLO4_07384 Corchorus olitorius HOM05D002956 ORTHO05D008031 7.7e-06 55.8 113 30.1
MCO15G679 Micromonas commoda HOM05D014140 ORTHO05D015854 7.7e-06 55.8 158 30.4
PGR119G0612 Punica granatum HOM05D002956 ORTHO05D008031 7.7e-06 55.8 151 26.5
Sabra07G0022600 Salix brachista HOM05D005677 ORTHO05D006966 7.7e-06 55.8 193 28.5
Sopen02g029910 Solanum pennellii HOM05D005677 ORTHO05D006966 7.7e-06 55.8 234 25.2


User provided reference genes

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