Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g038940 Solanum pennellii HOM05D000880 ORTHO05D009684 3.2e-134 483.0 337 100.0
Solyc03g120070.4 Solanum lycopersicum HOM05D000880 ORTHO05D009684 1.7e-132 477.2 337 97.0
PGSC0003DMG400005692 Solanum tuberosum HOM05D000880 ORTHO05D009684 1.1e-129 468.0 337 97.6
Nitab4.5_0000502g0180 Nicotiana tabacum HOM05D000880 ORTHO05D009684 1.9e-94 350.9 315 83.2
Peaxi162Scf00288g01016 Petunia axillaris HOM05D000880 ORTHO05D009684 9.3e-86 322.0 316 82.9
Nitab4.5_0001956g0020 Nicotiana tabacum HOM05D000880 ORTHO05D009684 4.2e-70 270.0 303 79.2
Dinv15656 Davidia involucrata HOM05D000880 ORTHO05D009684 3.7e-50 203.8 324 58.6
Cc08_g06370 Coffea canephora HOM05D000880 ORTHO05D009684 1.4e-44 185.3 321 59.5
Migut.E01433 Erythranthe guttata HOM05D000880 ORTHO05D009684 5.7e-43 179.9 335 56.7
vmacro08195 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 7.7e-40 169.5 324 59.0
Rhsim04G0217100 Rhododendron simsii HOM05D000880 ORTHO05D009684 2.2e-39 167.9 331 55.9
Actinidia06447 Actinidia chinensis HOM05D000880 ORTHO05D009684 5.5e-38 163.3 322 55.0
Cfa013251 Carpinus fangiana HOM05D000880 ORTHO05D008158 6.8e-36 156.4 314 56.7
Oeu040613.1 Olea europaea HOM05D000880 ORTHO05D009684 4.4e-35 153.7 166 51.8
Atru.chr7.2671 Acer truncatum HOM05D000880 ORTHO05D009684 2.8e-34 151.0 331 49.8
Lj4A910T18 Lonicera japonica HOM05D000880 ORTHO05D009684 3.7e-34 150.6 312 59.0
Cpa.g.sc10.206 Carica papaya HOM05D000880 ORTHO05D009684 1.1e-33 149.1 319 54.2
CiPaw.07G214800 Carya illinoinensis HOM05D000880 ORTHO05D009684 2.0e-32 144.8 318 56.0
SGA_v2.0_scaffold121G33022 Striga asiatica HOM05D000880 ORTHO05D009684 2.0e-32 144.8 326 45.1
Lj6C69T3 Lonicera japonica HOM05D000880 ORTHO05D009684 1.0e-31 142.5 305 56.4
CSS0007644 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 2.3e-31 141.4 296 56.8
QL12p024656 Quercus lobata HOM05D000880 ORTHO05D009684 3.6e-29 134.0 298 57.4
FAN24G3119 Fragaria x ananassa HOM05D000880 ORTHO05D009684 4.7e-29 133.7 337 51.3
CsaV3_2G031530 Cucumis sativus L. HOM05D000880 ORTHO05D009684 6.8e-28 129.8 273 57.9
RcHm_v2.0_Chr6g0312241 Rosa chinensis HOM05D000880 ORTHO05D009684 1.2e-27 129.0 333 51.7
Potri.018G004400 Populus trichocarpa HOM05D000880 ORTHO05D009684 2.0e-27 128.3 303 53.1
MD08G1133900 Malus domestica HOM05D000880 ORTHO05D009684 2.6e-27 127.9 300 55.7
FAN27G3148 Fragaria x ananassa HOM05D000880 ORTHO05D009684 3.4e-27 127.5 272 58.1
FAN20G2124 Fragaria x ananassa HOM05D000880 ORTHO05D009684 4.4e-27 127.1 330 53.0
FvH4_2g30660 Fragaria vesca HOM05D000880 ORTHO05D009684 1.1e-25 122.5 293 54.9
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 3.5e-24 117.5 321 51.4
Nn8g39798 Nelumbo nucifera HOM05D000880 ORTHO05D009684 3.5e-24 117.5 315 53.3
Phvul.011G207000 Phaseolus vulgaris HOM05D000880 ORTHO05D009684 5.9e-24 116.7 274 56.2
vmacro08192 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 7.8e-24 116.3 309 50.8
Prupe.1G462500 Prunus persica HOM05D000880 ORTHO05D009684 1.0e-23 115.9 305 53.1
Glyma.13G197400 Glycine max HOM05D000880 ORTHO05D009684 1.3e-23 115.5 261 51.0
arahy.Tifrunner.gnm1.ann1.CHY0RW Arachis hypogaea HOM05D000880 ORTHO05D009684 1.7e-23 115.2 321 51.4
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 5.0e-23 113.6 303 51.5
Aqoxy5G01876 Aquilegia oxysepala HOM05D000880 ORTHO05D009684 6.6e-23 113.2 320 52.2
TAR626G1204 Trochodendron aralioides HOM05D000880 ORTHO05D009684 8.6e-23 112.8 311 51.1
Manes.07G088100 Manihot esculenta HOM05D000880 ORTHO05D009684 2.5e-22 111.3 303 52.1
Haze_21694 Corylus avellana HOM05D000880 ORTHO05D009684 7.3e-22 109.8 262 58.4
VMungo1127G1257 Vigna mungo HOM05D000880 ORTHO05D009684 1.2e-21 109.0 260 56.5
Lalb_Chr03g0032741 Lupinus albus HOM05D000880 ORTHO05D009684 1.6e-21 108.6 303 51.8
CANSAT78G1387 Cannabis sativa HOM05D000880 ORTHO05D009684 3.6e-21 107.5 294 54.8
Hund04480 Selenicereus undatus HOM05D000880 ORTHO05D009684 1.0e-20 105.9 251 59.8
Haze_10332 Corylus avellana HOM05D000880 ORTHO05D009684 3.4e-19 100.9 215 62.8
Aa31LG10G9680 Aethionema arabicum HOM05D000880 ORTHO05D009684 5.8e-19 100.1 261 54.4
Ca_12883_v3 Cicer arietinum L. HOM05D000880 ORTHO05D009684 7.5e-19 99.8 267 50.2
GSVIVG01003996001 Vitis vinifera HOM05D000880 ORTHO05D009684 7.5e-19 99.8 214 62.6
Lsat_1_v5_gn_5_33201 Lactuca sativa HOM05D000880 ORTHO05D009684 2.2e-18 98.2 335 44.2
Sed0004667 Sechium edule HOM05D000880 ORTHO05D009684 1.1e-17 95.9 296 47.3
ECA236G3570 Erigeron canadensis HOM05D000705 ORTHO05D002970 1.4e-17 95.5 256 53.1
Aa31LG10G9610 Aethionema arabicum HOM05D000880 ORTHO05D009684 2.4e-17 94.7 320 43.4
Sabra18G0010100 Salix brachista HOM05D000880 ORTHO05D009684 5.4e-17 93.6 296 52.4
Sabra18G0001200 Salix brachista HOM05D000880 ORTHO05D009684 7.0e-17 93.2 294 52.7
MELO3C011202.2 Cucumis melo HOM05D000880 ORTHO05D009684 1.6e-16 92.0 238 60.1
Lj3g0007027 Lotus japonicus HOM05D000880 ORTHO05D009684 2.7e-16 91.3 307 37.8
Medtr1g010020 Medicago truncatula HOM05D000880 ORTHO05D009684 6.0e-16 90.1 279 53.4
Ciclev10007859m.g Citrus clementina HOM05D000880 ORTHO05D009684 2.3e-15 88.2 288 54.9
ECA232G0576 Erigeron canadensis HOM05D000880 ORTHO05D009684 3.9e-15 87.4 256 52.0
Psat6g031840 Pisum sativum HOM05D000880 ORTHO05D009684 3.9e-15 87.4 294 51.4
HanXRQChr07g0202221 Helianthus annuus HOM05D000880 ORTHO05D009684 6.6e-15 86.7 184 35.9
Thecc.09G004700 Theobroma cacao HOM05D000880 ORTHO05D009684 1.1e-14 85.9 165 36.4
Glyma.15G236000 Glycine max HOM05D000880 ORTHO05D009684 1.5e-14 85.5 233 48.5
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 1.9e-14 85.1 177 37.3
PGR044G0315 Punica granatum HOM05D000880 ORTHO05D009684 2.1e-13 81.6 300 49.3
TPR.G12115 Trifolium pratense HOM05D000880 ORTHO05D009684 2.8e-13 81.3 155 37.4
DCAR_017077 Daucus carota HOM05D000880 ORTHO05D009684 4.7e-13 80.5 87 46.0
Sp2g22620 Schrenkiella parvula HOM05D000880 ORTHO05D009684 8.1e-13 79.7 291 50.9
MSTRG.13951 Avicennia marina HOM05D000880 ORTHO05D009684 3.1e-12 77.8 72 50.0
CiPaw.15G081300 Carya illinoinensis HOM05D000880 ORTHO05D009684 4.0e-12 77.4 80 47.5
Thhalv10003880m.g Eutrema salsugineum HOM05D000880 ORTHO05D009684 1.5e-11 75.5 158 30.4
PSO017G1147 Papaver somniferum HOM05D000880 ORTHO05D001950 4.4e-11 73.9 173 32.4
CARHR188620 Cardamine hirsuta HOM05D000880 ORTHO05D009684 5.8e-11 73.6 159 33.3
Sc07g0001710 Simmondsia chinensis HOM05D000880 ORTHO05D009684 1.7e-10 72.0 103 39.8
Ah.02g121750 Amaranthus hybridus HOM05D000880 ORTHO05D009684 6.4e-10 70.1 234 56.4
A06p35600 Brassica napus HOM05D000880 ORTHO05D009684 1.1e-09 69.3 293 49.5
MBI13_g01685_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D001950 1.1e-09 69.3 178 32.0
Carub.0006s2268 Capsella rubella HOM05D000880 ORTHO05D009684 1.4e-09 68.9 159 32.1
EL10Ac6g15284 Beta vulgaris HOM05D000880 ORTHO05D009684 3.2e-09 67.8 95 41.1
BraA06t26485Z Brassica rapa HOM05D000880 ORTHO05D009684 5.4e-09 67.0 292 49.3
AUR62003593 Chenopodium quinoa HOM05D000880 ORTHO05D009684 1.2e-08 65.9 95 40.0
AUR62017906 Chenopodium quinoa HOM05D000880 ORTHO05D009684 1.2e-08 65.9 95 40.0
Eucgr.H00073 Eucalyptus grandis HOM05D000880 ORTHO05D009684 1.6e-08 65.5 312 51.3
BolC7t44823H Brassica oleracea HOM05D000880 ORTHO05D009684 2.1e-08 65.1 162 29.6
C07p42940 Brassica napus HOM05D000880 ORTHO05D009684 2.7e-08 64.7 167 28.7
AT5G24830 Arabidopsis thaliana HOM05D000880 ORTHO05D009684 1.0e-07 62.8 156 32.1
MD15G1110300 Malus domestica HOM05D000880 ORTHO05D009684 5.1e-07 60.5 192 59.4
CSS0003109 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 1.1e-06 59.3 71 45.1
HPP92_017364 Vanilla planifolia HOM05D003382 ORTHO05D003930 1.1e-06 59.3 113 31.9


User provided reference genes

Program Settings