Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g038700 Solanum pennellii HOM05D005660 ORTHO05D006954 1.9e-56 222.2 112 100.0
Solyc03g119840.3 Solanum lycopersicum HOM05D005660 ORTHO05D006954 1.5e-53 212.6 112 97.3
CAN.G438.109 Capsicum annuum HOM05D005660 ORTHO05D006954 4.2e-43 177.9 116 80.2
Nitab4.5_0003716g0100 Nicotiana tabacum HOM05D005660 ORTHO05D006954 7.9e-42 173.7 112 77.7
Peaxi162Scf00015g00624 Petunia axillaris HOM05D005660 ORTHO05D006954 1.1e-40 169.9 112 74.1
Nitab4.5_0001432g0090 Nicotiana tabacum HOM05D005660 ORTHO05D006954 1.3e-36 156.4 113 71.7
Sopen06g026530 Solanum pennellii HOM05D005660 ORTHO05D006954 3.9e-33 144.8 104 69.2
Lsat_1_v5_gn_1_15860 Lactuca sativa HOM05D005660 ORTHO05D006954 9.7e-32 140.2 106 67.0
Lj5C141T17 Lonicera japonica HOM05D005660 ORTHO05D006954 9.7e-32 140.2 106 65.1
PGSC0003DMG400004073 Solanum tuberosum HOM05D005660 ORTHO05D006954 1.3e-31 139.8 106 69.8
Nitab4.5_0010134g0010 Nicotiana tabacum HOM05D005660 ORTHO05D006954 1.7e-31 139.4 110 68.2
ECA247G3454 Erigeron canadensis HOM05D005660 ORTHO05D006954 3.7e-31 138.3 106 66.0
Cc04_g07620 Coffea canephora HOM05D005660 ORTHO05D006954 4.8e-31 137.9 106 65.1
Atru.chr9.733 Acer truncatum HOM05D005660 ORTHO05D006954 2.4e-30 135.6 106 63.2
HanXRQChr02g0042751 Helianthus annuus HOM05D005660 ORTHO05D006954 5.3e-30 134.4 106 65.1
CSS0007003 Camellia sinensis var. sinensis HOM05D005660 ORTHO05D006954 3.4e-29 131.7 108 63.9
QL10p023157 Quercus lobata HOM05D005660 ORTHO05D006954 3.4e-29 131.7 106 63.2
HanXRQChr04g0105941 Helianthus annuus HOM05D005660 ORTHO05D006954 1.3e-28 129.8 104 63.5
COL.COLO4_38430 Corchorus olitorius HOM05D005660 ORTHO05D006954 1.7e-28 129.4 106 58.5
PGSC0003DMG400005618 Solanum tuberosum HOM05D005660 ORTHO05D006954 2.9e-28 128.6 75 89.3
Thecc.03G027100 Theobroma cacao HOM05D005660 ORTHO05D006954 3.8e-28 128.3 109 58.7
Sed0025711 Sechium edule HOM05D005660 ORTHO05D006954 1.1e-27 126.7 112 60.7
Dinv36893 Davidia involucrata HOM05D005660 ORTHO05D006954 3.2e-27 125.2 106 59.4
PGR083G1435 Punica granatum HOM05D005660 ORTHO05D006954 4.2e-27 124.8 115 55.7
SalBow2G0395 Salvia bowleyana HOM05D005660 ORTHO05D006954 5.5e-27 124.4 106 60.4
arahy.Tifrunner.gnm1.ann1.18T8HP Arachis hypogaea HOM05D005660 ORTHO05D006954 9.4e-27 123.6 107 57.9
ClCG04G011310 Citrullus lanatus HOM05D005660 ORTHO05D006954 9.4e-27 123.6 113 57.5
Duzib068G0469 Durio zibethinus HOM05D005660 ORTHO05D006954 9.4e-27 123.6 106 57.5
Oeu016162.1 Olea europaea HOM05D005660 ORTHO05D006954 1.2e-26 123.2 100 66.0
Migut.K00381 Erythranthe guttata HOM05D005660 ORTHO05D006954 6.1e-26 120.9 105 60.0
Ciclev10022237m.g Citrus clementina HOM05D005660 ORTHO05D006954 8.0e-26 120.6 108 55.6
Lj1g0000047 Lotus japonicus HOM05D005660 ORTHO05D006954 1.4e-25 119.8 107 57.9
Eucgr.B00688 Eucalyptus grandis HOM05D005660 ORTHO05D006954 3.0e-25 118.6 106 50.9
Actinidia39803 Actinidia chinensis HOM05D005660 ORTHO05D006954 3.9e-25 118.2 107 56.1
Manes.01G021600 Manihot esculenta HOM05D005660 ORTHO05D006954 6.7e-25 117.5 106 55.7
VMungo1309G1625 Vigna mungo HOM05D005660 ORTHO05D006954 6.7e-25 117.5 108 56.5
Prupe.5G216100 Prunus persica HOM05D005660 ORTHO05D006954 8.8e-25 117.1 113 55.8
CiPaw.16G083200 Carya illinoinensis HOM05D005660 ORTHO05D006954 1.1e-24 116.7 113 55.8
CiPaw.15G125200 Carya illinoinensis HOM05D005660 ORTHO05D006954 1.5e-24 116.3 109 59.6
Glyma.06G209600 Glycine max HOM05D005660 ORTHO05D006954 2.0e-24 115.9 107 57.0
TWI81G0064 Tripterygium wilfordii HOM05D005660 ORTHO05D006954 2.0e-24 115.9 109 53.2
Glyma.04G145600 Glycine max HOM05D005660 ORTHO05D006954 3.3e-24 115.2 106 57.5
FvH4_5g12810 Fragaria vesca HOM05D005660 ORTHO05D006954 4.4e-24 114.8 116 52.6
FAN18G2100 Fragaria x ananassa HOM05D005660 ORTHO05D006954 4.4e-24 114.8 116 52.6
Phvul.009G201000 Phaseolus vulgaris HOM05D005660 ORTHO05D006954 4.4e-24 114.8 108 55.6
CsaV3_1G006460 Cucumis sativus L. HOM05D005660 ORTHO05D006954 5.7e-24 114.4 113 54.0
Manes.05G117900 Manihot esculenta HOM05D005660 ORTHO05D006954 5.7e-24 114.4 107 54.2
Medtr2g055760 Medicago truncatula HOM05D005660 ORTHO05D006954 5.7e-24 114.4 107 57.0
Sed0025679 Sechium edule HOM05D005660 ORTHO05D006954 5.7e-24 114.4 112 56.2
FAN08G1036 Fragaria x ananassa HOM05D005660 ORTHO05D006954 7.4e-24 114.0 116 52.6
FAN18G0270 Fragaria x ananassa HOM05D005660 ORTHO05D006954 1.7e-23 112.8 111 53.2
CANSAT80G1116 Cannabis sativa HOM05D005660 ORTHO05D006954 2.2e-23 112.5 112 51.8
Gohir.A12G265100 Gossypium hirsutum HOM05D005660 ORTHO05D006954 2.2e-23 112.5 109 54.1
Potri.012G059100 Populus trichocarpa HOM05D005660 ORTHO05D006954 2.2e-23 112.5 110 53.6
arahy.Tifrunner.gnm1.ann1.IPQJ9D Arachis hypogaea HOM05D005660 ORTHO05D006954 2.8e-23 112.1 108 51.9
Glyma.05G014100 Glycine max HOM05D005660 ORTHO05D006954 2.8e-23 112.1 106 53.8
Gohir.D12G265300 Gossypium hirsutum HOM05D005660 ORTHO05D006954 3.7e-23 111.7 109 53.2
MD06G1209900 Malus domestica HOM05D005660 ORTHO05D006954 3.7e-23 111.7 123 52.0
RcHm_v2.0_Chr7g0184421 Rosa chinensis HOM05D005660 ORTHO05D006954 3.7e-23 111.7 112 50.0
MSTRG.9561 Avicennia marina HOM05D005660 ORTHO05D006954 4.8e-23 111.3 100 59.0
Gorai.008G285000 Gossypium raimondii HOM05D005660 ORTHO05D006954 6.3e-23 110.9 109 53.2
Lalb_Chr07g0178541 Lupinus albus HOM05D005660 ORTHO05D006954 8.2e-23 110.5 105 54.3
EL10Ac5g11240 Beta vulgaris HOM05D005660 ORTHO05D006954 1.8e-22 109.4 114 48.2
MD14G1220800 Malus domestica HOM05D005660 ORTHO05D006954 1.8e-22 109.4 119 50.4
Nitab4.5_0000410g0170 Nicotiana tabacum HOM05D005660 ORTHO05D006954 1.8e-22 109.4 75 77.3
Glyma.17G122400 Glycine max HOM05D005660 ORTHO05D006954 2.4e-22 109.0 105 52.4
MELO3C002072.2 Cucumis melo HOM05D005660 ORTHO05D006954 3.1e-22 108.6 114 53.5
Psat1g025680 Pisum sativum HOM05D005660 ORTHO05D006954 3.1e-22 108.6 105 54.3
Hund09993 Selenicereus undatus HOM05D005660 ORTHO05D006954 4.1e-22 108.2 120 52.5
Peaxi162Scf00013g00938 Petunia axillaris HOM05D005660 ORTHO05D006954 7.0e-22 107.5 112 53.6
Nn3g17686 Nelumbo nucifera HOM05D005660 ORTHO05D006954 9.1e-22 107.1 105 52.4
Aqoxy3G03878 Aquilegia oxysepala HOM05D005660 ORTHO05D006954 1.2e-21 106.7 106 51.9
arahy.Tifrunner.gnm1.ann1.YK8N2P Arachis hypogaea HOM05D005660 ORTHO05D006954 2.0e-21 105.9 108 49.1
Lj4g0015648 Lotus japonicus HOM05D005660 ORTHO05D006954 4.5e-21 104.8 106 52.8
PSO063G2916 Papaver somniferum HOM05D005660 ORTHO05D006954 4.5e-21 104.8 103 56.3
Ah.11g047200 Amaranthus hybridus HOM05D005660 ORTHO05D006954 1.3e-20 103.2 123 45.5
BcaB04g17376 Brassica carinata HOM05D005660 ORTHO05D006954 8.5e-20 100.5 112 49.1
Thhalv10011768m.g Eutrema salsugineum HOM05D005660 ORTHO05D006954 1.5e-19 99.8 117 47.9
PSO782G0127 Papaver somniferum HOM05D005660 ORTHO05D006954 1.9e-19 99.4 103 54.4
Phvul.003G178300 Phaseolus vulgaris HOM05D005660 ORTHO05D006954 1.9e-19 99.4 105 50.5
AL1G55790 Arabidopsis lyrata HOM05D005660 ORTHO05D006954 3.2e-19 98.6 115 47.8
CARHR038970 Cardamine hirsuta HOM05D005660 ORTHO05D006954 3.2e-19 98.6 119 46.2
BcaC07g37091 Brassica carinata HOM05D005660 ORTHO05D006954 7.2e-19 97.4 112 48.2
C08p04550 Brassica napus HOM05D005660 ORTHO05D006954 7.2e-19 97.4 112 48.2
BolC8t47259H Brassica oleracea HOM05D005660 ORTHO05D006954 7.2e-19 97.4 112 48.2
Carub.0001s3813 Capsella rubella HOM05D005660 ORTHO05D006954 7.2e-19 97.4 114 45.6
BcaNung05017 Brassica carinata HOM05D005660 ORTHO05D006954 1.2e-18 96.7 113 47.8
A06p04080 Brassica napus HOM05D005660 ORTHO05D006954 1.2e-18 96.7 117 46.2
A08p04280 Brassica napus HOM05D005660 ORTHO05D006954 1.2e-18 96.7 113 47.8
C06p03690 Brassica napus HOM05D005660 ORTHO05D006954 1.2e-18 96.7 113 47.8
BolC6t35508H Brassica oleracea HOM05D005660 ORTHO05D006954 1.2e-18 96.7 113 47.8
BraA08t32455Z Brassica rapa HOM05D005660 ORTHO05D006954 1.2e-18 96.7 113 47.8
BraA06t23613Z Brassica rapa HOM05D005660 ORTHO05D006954 2.7e-18 95.5 113 46.9
THA.LOC104820410 Tarenaya hassleriana HOM05D005660 ORTHO05D006954 4.7e-18 94.7 109 48.6
Oeu027136.1 Olea europaea HOM05D005660 ORTHO05D006954 6.1e-18 94.4 74 70.3
Sp1g35870 Schrenkiella parvula HOM05D005660 ORTHO05D006954 1.0e-17 93.6 112 47.3
Sc12g0006810 Simmondsia chinensis HOM05D005660 ORTHO05D006954 1.0e-17 93.6 108 45.4
AT1G48960 Arabidopsis thaliana HOM05D005660 ORTHO05D006954 1.8e-17 92.8 115 46.1
BcaC08g43100 Brassica carinata HOM05D005660 ORTHO05D006954 1.8e-17 92.8 113 46.9
Aa31LG10G4970 Aethionema arabicum HOM05D005660 ORTHO05D006954 8.8e-17 90.5 100 48.0
GSVIVG01008223001 Vitis vinifera HOM05D005660 ORTHO05D006954 1.2e-16 90.1 89 51.7
TAR629G1816 Trochodendron aralioides HOM05D005660 ORTHO05D006954 7.5e-16 87.4 104 49.0
Sabra12G0040800 Salix brachista HOM05D005660 ORTHO05D006954 1.7e-15 86.3 94 48.9
Cpa.g.c34045 Carica papaya HOM05D005660 ORTHO05D006954 2.2e-15 85.9 74 60.8
Actinidia31034 Actinidia chinensis HOM05D005660 ORTHO05D009563 2.8e-15 85.5 74 59.5
DCAR_011337 Daucus carota HOM05D005660 ORTHO05D006954 3.7e-15 85.1 74 66.2
arahy.Tifrunner.gnm1.ann1.K4DBIV Arachis hypogaea HOM05D005660 ORTHO05D006954 7.0e-14 80.9 75 57.3
Haze_18589 Corylus avellana HOM05D005660 ORTHO05D006954 2.7e-13 79.0 73 58.9
TPR.G27758 Trifolium pratense HOM05D005660 ORTHO05D006954 2.7e-13 79.0 87 49.4
Cfa019836 Carpinus fangiana HOM05D005660 ORTHO05D006954 3.5e-13 78.6 73 57.5
vmacro17684 Vaccinium macrocarpon HOM05D005660 ORTHO05D006954 3.5e-13 78.6 75 58.7
Ca_02656_v3 Cicer arietinum L. HOM05D005660 ORTHO05D006954 5.9e-13 77.8 75 54.7
Haze_18590 Corylus avellana HOM05D005660 ORTHO05D006954 5.9e-13 77.8 73 57.5
Lalb_Chr13g0302401 Lupinus albus HOM05D005660 ORTHO05D006954 1.7e-12 76.3 87 44.8
VMungo1215G2351 Vigna mungo HOM05D005660 ORTHO05D006954 3.8e-12 75.1 172 32.6
AUR62032180 Chenopodium quinoa HOM05D005660 ORTHO05D006954 3.2e-11 72.0 82 48.8
FAN13G2173 Fragaria x ananassa HOM05D005660 ORTHO05D006954 4.7e-10 68.2 78 52.6
TAR622G0544 Trochodendron aralioides HOM05D005660 ORTHO05D006954 3.4e-08 62.0 106 37.7
Duzib084G1344 Durio zibethinus HOM05D005660 ORTHO05D006954 9.8e-08 60.5 106 34.9
MBI16_g23748_MAGBIO Magnolia biondii HOM05D005660 ORTHO05D006954 9.1e-06 53.9 88 44.3


User provided reference genes

Program Settings