Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 1.6e-48 195.7 94 100.0
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 3.4e-46 188.0 94 95.7
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 4.3e-17 91.3 99 49.5
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 9.7e-17 90.1 98 46.9
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 2.4e-15 85.5 57 63.2
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 9.0e-15 83.6 93 47.3
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 4.5e-14 81.3 83 53.0
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 1.0e-13 80.1 70 55.7
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.7e-13 79.3 106 48.1
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 3.8e-13 78.2 105 44.8
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 5.0e-13 77.8 96 42.7
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 5.0e-13 77.8 105 43.8
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 5.0e-13 77.8 102 45.1
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 6.5e-13 77.4 115 37.4
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 6.5e-13 77.4 102 46.1
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 6.5e-13 77.4 98 43.9
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 8.5e-13 77.0 96 47.9
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 1.1e-12 76.6 96 42.7
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.1e-12 76.6 93 47.3
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 1.1e-12 76.6 100 44.0
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.4e-12 76.3 97 48.5
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 1.4e-12 76.3 98 41.8
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 1.4e-12 76.3 105 45.7
Eucgr.B00694 Eucalyptus grandis HOM05D005816 ORTHO05D006915 1.9e-12 75.9 90 46.7
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 3.2e-12 75.1 104 46.2
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 3.2e-12 75.1 105 43.8
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 4.2e-12 74.7 63 61.9
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 5.5e-12 74.3 59 64.4
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 5.5e-12 74.3 58 62.1
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 7.2e-12 73.9 63 58.7
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 7.2e-12 73.9 61 60.7
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 7.2e-12 73.9 71 53.5
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 7.2e-12 73.9 96 41.7
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 7.2e-12 73.9 98 42.9
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 9.4e-12 73.6 60 63.3
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 9.4e-12 73.6 121 38.8
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 1.2e-11 73.2 58 60.3
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 1.2e-11 73.2 111 43.2
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 1.2e-11 73.2 73 50.7
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 1.2e-11 73.2 61 59.0
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 1.2e-11 73.2 93 45.2
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 1.6e-11 72.8 57 61.4
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 1.6e-11 72.8 66 57.6
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 1.6e-11 72.8 105 41.0
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 2.1e-11 72.4 108 42.6
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 2.7e-11 72.0 56 62.5
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 2.7e-11 72.0 60 56.7
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 3.6e-11 71.6 113 39.8
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 3.6e-11 71.6 106 39.6
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 4.6e-11 71.2 70 51.4
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 6.1e-11 70.9 64 56.2
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 6.1e-11 70.9 64 56.2
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 6.1e-11 70.9 61 55.7
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 7.9e-11 70.5 60 55.0
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 7.9e-11 70.5 64 54.7
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 7.9e-11 70.5 64 54.7
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 7.9e-11 70.5 116 42.2
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 7.9e-11 70.5 91 42.9
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 7.9e-11 70.5 110 40.9
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 1.0e-10 70.1 57 61.4
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 1.4e-10 69.7 72 51.4
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 1.8e-10 69.3 55 60.0
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 1.8e-10 69.3 55 60.0
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 1.8e-10 69.3 56 62.5
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 1.8e-10 69.3 92 44.6
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 1.8e-10 69.3 120 39.2
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 2.3e-10 68.9 56 64.3
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 2.3e-10 68.9 63 50.8
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 2.3e-10 68.9 68 48.5
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 3.0e-10 68.6 66 53.0
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 3.0e-10 68.6 87 47.1
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 3.0e-10 68.6 55 60.0
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 3.9e-10 68.2 57 66.7
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 3.9e-10 68.2 104 38.5
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 3.9e-10 68.2 95 47.4
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 5.1e-10 67.8 102 42.2
SGA_v2.0_scaffold59G20629 Striga asiatica HOM05D005816 ORTHO05D006915 5.1e-10 67.8 48 58.3
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 6.7e-10 67.4 55 60.0
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 6.7e-10 67.4 55 60.0
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 6.7e-10 67.4 106 39.6
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 8.8e-10 67.0 58 53.4
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 8.8e-10 67.0 54 57.4
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 8.8e-10 67.0 67 50.7
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 8.8e-10 67.0 58 62.1
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 1.1e-09 66.6 89 44.9
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.1e-09 66.6 55 60.0
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 1.1e-09 66.6 62 53.2
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 1.5e-09 66.2 56 62.5
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 1.5e-09 66.2 55 58.2
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 1.5e-09 66.2 70 51.4
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 2.0e-09 65.9 53 58.5
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 2.0e-09 65.9 58 58.6
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 2.5e-09 65.5 95 40.0
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 2.5e-09 65.5 72 47.2
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 2.5e-09 65.5 63 50.8
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 2.5e-09 65.5 59 54.2
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 3.3e-09 65.1 58 55.2
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 4.3e-09 64.7 104 38.5
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 4.3e-09 64.7 73 45.2
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 5.7e-09 64.3 61 52.5
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 5.7e-09 64.3 95 47.4
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 5.7e-09 64.3 75 42.7
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 7.4e-09 63.9 56 57.1
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 9.7e-09 63.5 101 39.6
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 9.7e-09 63.5 115 36.5
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 9.7e-09 63.5 76 42.1
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 1.7e-08 62.8 56 57.1
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 2.2e-08 62.4 62 50.0
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 2.8e-08 62.0 65 50.8
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 3.7e-08 61.6 65 49.2
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 3.7e-08 61.6 109 33.9
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 3.7e-08 61.6 62 54.8
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 4.8e-08 61.2 109 42.2
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.8e-08 61.2 52 59.6
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 6.3e-08 60.8 56 55.4
VMungo1215G1388 Vigna mungo HOM05D005816 ORTHO05D006915 6.3e-08 60.8 108 38.0
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 8.2e-08 60.5 71 46.5
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 8.2e-08 60.5 101 41.6
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 1.1e-07 60.1 68 47.1
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 1.4e-07 59.7 45 64.4
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.4e-07 59.7 56 55.4
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 1.8e-07 59.3 63 49.2
CiPaw.05G127200 Carya illinoinensis HOM05D007541 ORTHO05D009404 9.1e-07 57.0 42 64.3
Nn4g23363 Nelumbo nucifera HOM05D007541 ORTHO05D009404 9.1e-07 57.0 41 68.3
Gohir.A03G097050 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.2e-06 56.6 53 58.5
Sc04g0003730 Simmondsia chinensis HOM05D005816 ORTHO05D006915 1.2e-06 56.6 45 60.0
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 2.6e-06 55.5 66 45.5
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 3.4e-06 55.1 104 36.5
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 5.9e-06 54.3 56 51.8


User provided reference genes

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