Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 0.0e+00 1325.8 659 100.0
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 0.0e+00 1315.1 660 99.2
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 0.0e+00 1308.1 660 98.8
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 0.0e+00 1182.9 649 90.9
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 0.0e+00 1181.8 648 90.7
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 0.0e+00 1178.7 604 95.7
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 0.0e+00 1170.6 649 90.3
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 7.6e-294 1013.4 651 76.8
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 4.2e-284 981.1 656 74.7
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 7.2e-284 980.3 655 73.4
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 7.2e-284 980.3 659 72.8
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 7.9e-283 976.9 665 73.1
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 1.0e-282 976.5 648 74.5
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.8e-282 975.7 662 73.7
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 3.9e-282 974.5 665 72.9
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 5.1e-282 974.2 652 74.2
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 6.7e-282 973.8 653 73.4
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 6.7e-282 973.8 649 73.3
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 1.1e-281 973.0 603 77.8
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 1.5e-281 972.6 647 72.6
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 2.4e-279 965.3 651 73.1
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 5.3e-279 964.1 651 72.8
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 1.2e-278 963.0 651 73.1
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 1.5e-278 962.6 652 72.7
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 2.0e-278 962.2 651 72.4
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 2.6e-278 961.8 680 71.0
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 2.6e-278 961.8 659 71.6
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 4.5e-278 961.1 650 73.2
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 7.7e-278 960.3 659 71.3
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 1.0e-277 959.9 652 73.3
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 1.3e-277 959.5 649 72.7
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 1.7e-277 959.1 652 72.5
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 2.2e-277 958.7 652 71.2
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 2.9e-277 958.4 651 72.4
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 5.0e-277 957.6 672 71.3
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 5.0e-277 957.6 657 71.8
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 7.2e-276 953.7 665 71.4
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 2.1e-275 952.2 604 76.2
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 3.6e-275 951.4 650 71.4
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 4.7e-275 951.0 649 71.3
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 1.8e-274 949.1 651 71.9
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 5.1e-274 947.6 668 71.3
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 3.3e-273 944.9 654 71.3
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 3.3e-273 944.9 651 72.5
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 1.7e-272 942.6 657 70.9
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 2.8e-272 941.8 649 71.5
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 3.7e-272 941.4 651 71.1
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 3.1e-271 938.3 654 70.6
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 5.3e-271 937.6 652 72.2
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 7.0e-271 937.2 657 70.9
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 7.0e-271 937.2 653 71.7
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 9.1e-271 936.8 649 71.2
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 4.5e-270 934.5 651 70.7
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 1.7e-269 932.6 606 74.8
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 3.8e-269 931.4 651 70.7
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 8.5e-269 930.2 604 74.8
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 3.2e-268 928.3 662 69.9
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 4.2e-268 927.9 660 68.8
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 8.0e-267 923.7 652 69.8
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 1.4e-266 922.9 649 69.8
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 1.8e-266 922.5 603 74.1
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 3.9e-266 921.4 664 69.6
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 2.0e-265 919.1 605 74.4
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 9.7e-265 916.8 653 70.4
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 2.2e-264 915.6 653 69.4
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 3.7e-264 914.8 653 70.3
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 4.8e-264 914.4 654 70.3
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 4.8e-264 914.4 650 70.6
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 2.4e-263 912.1 601 73.4
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 2.4e-263 912.1 650 68.9
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 5.3e-263 911.0 605 71.7
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 1.3e-261 906.4 653 68.5
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 3.8e-261 904.8 648 69.1
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 5.0e-261 904.4 653 68.6
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 1.9e-260 902.5 661 68.8
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 5.5e-260 901.0 605 72.9
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 9.4e-260 900.2 653 67.4
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 2.1e-259 899.0 651 68.0
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 1.0e-258 896.7 651 68.5
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 3.3e-257 891.7 618 70.9
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 4.4e-257 891.3 656 66.8
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 7.0e-255 884.0 605 71.4
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 7.0e-255 884.0 656 67.4
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 9.1e-255 883.6 656 67.4
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 1.6e-254 882.9 657 67.3
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 1.7e-253 879.4 651 67.1
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 1.9e-252 875.9 655 66.4
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 7.2e-252 874.0 656 66.9
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 6.1e-251 870.9 657 66.7
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 2.0e-246 855.9 652 66.4
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 1.5e-244 849.7 653 65.1
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 4.0e-242 841.6 649 65.0
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 1.3e-240 836.6 714 59.7
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 2.2e-240 835.9 649 65.6
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 1.8e-239 832.8 517 78.7
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 9.2e-223 777.3 653 61.7
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 5.6e-220 768.1 776 52.1
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 1.2e-219 766.9 517 71.6
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 9.2e-215 750.7 654 59.5
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 1.2e-214 750.4 752 52.5
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 5.1e-213 745.0 743 51.4
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 4.6e-206 721.8 840 46.2
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 2.5e-204 716.1 813 48.3
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 4.4e-201 705.3 651 56.7
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 9.3e-199 697.6 600 58.5
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 3.0e-197 692.6 452 74.3
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 5.1e-189 665.2 454 71.6
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 2.5e-188 662.9 654 52.9
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 5.7e-172 608.6 423 70.2
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 1.4e-162 577.4 542 55.9
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 3.8e-160 569.3 547 53.7
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 1.6e-142 510.8 411 63.5
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 8.9e-125 451.8 311 70.1
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 4.0e-117 426.4 397 56.7
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 1.2e-108 398.3 264 74.6
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 8.3e-107 392.1 341 58.7
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 3.3e-95 353.6 235 71.5
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 4.9e-91 339.7 215 74.4
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 1.5e-87 328.2 337 51.9
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 2.9e-83 313.9 548 38.7
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 1.8e-61 241.5 151 72.8
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 1.4e-42 178.7 444 30.6
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 2.7e-41 174.5 139 62.6
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 8.2e-38 162.9 121 65.3
CAN.G438.117 Capsicum annuum HOM05D005975 ORTHO05D007373 3.1e-13 81.3 53 77.4
Nn1g03516 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.2e-09 69.3 49 65.3
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 2.8e-09 68.2 47 63.8
Potri.001G289250 Populus trichocarpa HOM05D005975 ORTHO05D007373 1.7e-06 58.9 48 62.5
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 2.2e-06 58.5 38 71.1


User provided reference genes

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