Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g038570 Solanum pennellii HOM05D007790 ORTHO05D009880 1.1e-33 146.0 70 100.0
Solyc03g119723.1 Solanum lycopersicum HOM05D007790 ORTHO05D009880 3.2e-33 144.4 70 98.6
Nitab4.5_0000410g0040 Nicotiana tabacum HOM05D007790 ORTHO05D009880 4.5e-27 124.0 70 84.3
Nitab4.5_0001599g0140 Nicotiana tabacum HOM05D007790 ORTHO05D009880 3.8e-26 120.9 70 84.3
Peaxi162Scf00015g00827 Petunia axillaris HOM05D007790 ORTHO05D009880 1.9e-25 118.6 71 84.5
SGA_v2.0_scaffold569G52962 Striga asiatica HOM05D007790 ORTHO05D009880 1.4e-17 92.4 58 70.7
Cc04_g07440 Coffea canephora HOM05D007790 ORTHO05D009880 5.5e-17 90.5 55 76.4
Migut.I00921 Erythranthe guttata HOM05D007790 ORTHO05D009880 6.1e-16 87.0 55 65.5
Actinidia18942 Actinidia chinensis HOM05D007790 ORTHO05D009880 1.5e-14 82.4 50 76.0
Actinidia35077 Actinidia chinensis HOM05D007790 ORTHO05D009880 2.0e-14 82.0 50 74.0
Oeu055894.1 Olea europaea HOM05D007790 ORTHO05D009880 2.0e-14 82.0 77 55.8
unitig_748.g8096 Utricularia gibba HOM05D007790 ORTHO05D009880 2.6e-14 81.6 55 65.5
vmacro22488 Vaccinium macrocarpon HOM05D007790 ORTHO05D009880 2.6e-14 81.6 52 69.2
CSS0043662 Camellia sinensis var. sinensis HOM05D007790 ORTHO05D009880 3.3e-14 81.3 46 78.3
Hma1.2p1_0151F.1_g067280 Hydrangea macrophylla HOM05D007790 ORTHO05D009880 3.3e-14 81.3 52 69.2
Cfa019804 Carpinus fangiana HOM05D007790 ORTHO05D009880 9.7e-14 79.7 52 69.2
SalBow2G0723 Salvia bowleyana HOM05D007790 ORTHO05D009880 9.7e-14 79.7 55 63.6
Haze_18633 Corylus avellana HOM05D007790 ORTHO05D009880 1.3e-13 79.3 52 69.2
Gohir.D12G266000 Gossypium hirsutum HOM05D007790 ORTHO05D009880 2.2e-13 78.6 55 65.5
Gorai.008G285700 Gossypium raimondii HOM05D007790 ORTHO05D009880 2.2e-13 78.6 55 65.5
Medtr7g115600 Medicago truncatula HOM05D007790 ORTHO05D009880 2.2e-13 78.6 53 66.0
CiPaw.16G084400 Carya illinoinensis HOM05D007790 ORTHO05D009880 2.8e-13 78.2 52 67.3
Gohir.A12G265800 Gossypium hirsutum HOM05D007790 ORTHO05D009880 2.8e-13 78.2 55 65.5
PGR044G0624 Punica granatum HOM05D007790 ORTHO05D009880 3.7e-13 77.8 50 68.0
Sc10g0009520 Simmondsia chinensis HOM05D007790 ORTHO05D009880 3.7e-13 77.8 62 58.1
Psat3g006760 Pisum sativum HOM05D007790 ORTHO05D009880 6.3e-13 77.0 50 68.0
Potri.011G140300 Populus trichocarpa HOM05D007790 ORTHO05D009880 8.2e-13 76.6 55 60.0
CANSAT64G1586 Cannabis sativa HOM05D007790 ORTHO05D009880 1.1e-12 76.3 52 65.4
Duzib068G0515 Durio zibethinus HOM05D007790 ORTHO05D009880 1.1e-12 76.3 54 64.8
DCAR_011206 Daucus carota HOM05D007790 ORTHO05D009880 1.4e-12 75.9 53 62.3
Manes.01G020200 Manihot esculenta HOM05D007790 ORTHO05D009880 1.8e-12 75.5 54 61.1
SGA_v2.0_scaffold69G23333 Striga asiatica HOM05D027511 ORTHO05D009880 1.8e-12 75.5 50 66.0
Thecc.03G029600 Theobroma cacao HOM05D007790 ORTHO05D009880 1.8e-12 75.5 54 61.1
Cpa.g.sc13.39 Carica papaya HOM05D007790 ORTHO05D009880 2.4e-12 75.1 55 60.0
Ca_09459_v3 Cicer arietinum L. HOM05D007790 ORTHO05D009880 3.1e-12 74.7 50 68.0
Glyma.02G139000 Glycine max HOM05D007790 ORTHO05D009880 5.3e-12 73.9 50 66.0
Glyma.07G088700 Glycine max HOM05D007790 ORTHO05D009880 5.3e-12 73.9 50 66.0
PGSC0003DMG401005708 Solanum tuberosum HOM05D007790 ORTHO05D009880 5.3e-12 73.9 34 97.1
arahy.Tifrunner.gnm1.ann1.ZI6FWF Arachis hypogaea HOM05D007790 ORTHO05D009880 7.0e-12 73.6 50 70.0
Ciclev10023249m.g Citrus clementina HOM05D007790 ORTHO05D009880 7.0e-12 73.6 50 68.0
Hund18110 Selenicereus undatus HOM05D007790 ORTHO05D009880 9.1e-12 73.2 47 63.8
Lalb_Chr09g0331121 Lupinus albus HOM05D007790 ORTHO05D009880 1.2e-11 72.8 54 66.7
Sed0012152 Sechium edule HOM05D007790 ORTHO05D009880 1.2e-11 72.8 53 64.2
EL10Ac1g02162 Beta vulgaris HOM05D007790 ORTHO05D009880 1.6e-11 72.4 62 54.8
ClCG06G014960 Citrullus lanatus HOM05D007790 ORTHO05D009880 1.6e-11 72.4 53 62.3
Phvul.003G060000 Phaseolus vulgaris HOM05D007790 ORTHO05D009880 1.6e-11 72.4 50 64.0
Eucgr.K02661 Eucalyptus grandis HOM05D007790 ORTHO05D009880 2.6e-11 71.6 53 58.5
arahy.Tifrunner.gnm1.ann1.11NJV3 Arachis hypogaea HOM05D007790 ORTHO05D009880 3.5e-11 71.2 50 66.0
Lsat_1_v5_gn_5_25161 Lactuca sativa HOM05D007790 ORTHO05D009880 4.5e-11 70.9 52 57.7
Lj2g0008445 Lotus japonicus HOM05D007790 ORTHO05D009880 7.7e-11 70.1 54 61.1
RcHm_v2.0_Chr7g0184711 Rosa chinensis HOM05D007790 ORTHO05D009880 1.0e-10 69.7 51 62.7
FvH4_5g12630 Fragaria vesca HOM05D007790 ORTHO05D009880 1.3e-10 69.3 51 62.7
FAN18G2988 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.3e-10 69.3 51 62.7
FAN18G4544 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.3e-10 69.3 51 62.7
FAN04G3172 Fragaria x ananassa HOM05D007790 ORTHO05D009880 2.2e-10 68.6 51 60.8
FAN13G0824 Fragaria x ananassa HOM05D007790 ORTHO05D009880 2.2e-10 68.6 51 60.8
CsaV3_1G003680 Cucumis sativus L. HOM05D007790 ORTHO05D009880 3.8e-10 67.8 47 61.7
MELO3C017293.2 Cucumis melo HOM05D007790 ORTHO05D009880 6.5e-10 67.0 47 63.8
MD06G1212000 Malus domestica HOM05D007790 ORTHO05D009880 6.5e-10 67.0 55 58.2
MD14G1222600 Malus domestica HOM05D007790 ORTHO05D009880 6.5e-10 67.0 55 58.2
TWI81G0366 Tripterygium wilfordii HOM05D007790 ORTHO05D009880 8.5e-10 66.6 49 61.2
PSO782G1288 Papaver somniferum HOM05D007790 ORTHO05D009880 1.9e-09 65.5 67 44.8
THA.LOC109116948 Tarenaya hassleriana HOM05D007790 ORTHO05D009880 1.9e-09 65.5 48 60.4
Thhalv10021890m.g Eutrema salsugineum HOM05D007790 ORTHO05D009880 3.2e-09 64.7 55 52.7
BcaC05g28610 Brassica carinata HOM05D007790 ORTHO05D009880 4.2e-09 64.3 65 46.2
C05p47140 Brassica napus HOM05D007790 ORTHO05D009880 4.2e-09 64.3 65 46.2
BolC5t33440H Brassica oleracea HOM05D007790 ORTHO05D009880 4.2e-09 64.3 65 46.2
Aa31LG8G5350 Aethionema arabicum HOM05D007790 ORTHO05D009880 7.2e-09 63.5 55 50.9
BcaC09g48808 Brassica carinata HOM05D007790 ORTHO05D009880 1.2e-08 62.8 52 51.9
C01p45710 Brassica napus HOM05D007790 ORTHO05D009880 1.2e-08 62.8 52 51.9
Sp3g16600 Schrenkiella parvula HOM05D007790 ORTHO05D009880 1.6e-08 62.4 55 49.1
Carub.0003s1829 Capsella rubella HOM05D007790 ORTHO05D009880 2.1e-08 62.0 55 50.9
Glyma.07G167700 Glycine max HOM05D007790 ORTHO05D009880 2.1e-08 62.0 47 59.6
BolC1t04534H Brassica oleracea HOM05D007790 ORTHO05D009880 2.7e-08 61.6 52 50.0
BcaB06g25895 Brassica carinata HOM05D007790 ORTHO05D009880 4.7e-08 60.8 55 47.3
A05p31120 Brassica napus HOM05D007790 ORTHO05D009880 4.7e-08 60.8 55 47.3
BraA05t21954Z Brassica rapa HOM05D007790 ORTHO05D009880 4.7e-08 60.8 55 47.3
Atru.chr9.781 Acer truncatum HOM05D007790 ORTHO05D009880 6.1e-08 60.5 47 57.4
AT3G18510 Arabidopsis thaliana HOM05D007790 ORTHO05D009880 6.1e-08 60.5 55 47.3
BcaB04g20771 Brassica carinata HOM05D007790 ORTHO05D009880 6.1e-08 60.5 55 49.1
CARHR093880 Cardamine hirsuta HOM05D007790 ORTHO05D009880 2.3e-07 58.5 55 52.7
AL3G31810 Arabidopsis lyrata HOM05D007790 ORTHO05D009880 8.8e-07 56.6 47 51.1
Os06g0618300 Oryza sativa ssp. japonica HOM05D007790 ORTHO05D009880 1.2e-06 56.2 48 52.1
ATR0681G001 Amborella trichopoda HOM05D007790 ORTHO05D009880 2.0e-06 55.5 51 47.1


User provided reference genes

Program Settings