Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 4.4e-89 331.3 167 100.0
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 2.0e-57 226.1 116 96.6
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 6.9e-50 201.1 113 85.0
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 5.0e-40 168.3 90 88.9
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 1.1e-34 150.6 97 80.4
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 1.2e-33 147.1 92 82.6
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 7.2e-31 137.9 106 65.1
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.6e-30 136.7 102 69.6
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.7e-30 136.0 105 64.8
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 1.1e-28 130.6 98 67.3
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 4.4e-28 128.6 108 61.1
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 7.4e-28 127.9 104 61.5
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 9.7e-28 127.5 104 59.6
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 1.3e-27 127.1 86 73.3
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.8e-27 125.9 117 57.3
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.8e-27 125.9 117 57.3
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 2.8e-27 125.9 79 77.2
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 2.8e-27 125.9 105 60.0
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 4.8e-27 125.2 108 60.2
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.1e-26 124.0 103 60.2
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 1.8e-26 123.2 80 76.2
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 1.8e-26 123.2 131 48.9
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.4e-26 122.9 103 60.2
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 9.1e-26 120.9 78 74.4
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 1.2e-25 120.6 106 57.5
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 2.0e-25 119.8 116 55.2
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 2.0e-25 119.8 118 56.8
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 2.6e-25 119.4 90 68.9
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 5.9e-25 118.2 116 56.9
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 7.7e-25 117.9 73 79.5
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.2e-24 116.3 116 55.2
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 3.8e-24 115.5 99 62.6
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 6.5e-24 114.8 85 69.4
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 1.1e-23 114.0 108 59.3
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 1.1e-23 114.0 118 53.4
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 1.4e-23 113.6 84 65.5
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 1.9e-23 113.2 93 57.0
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 4.2e-23 112.1 121 51.2
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 5.5e-23 111.7 77 70.1
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 7.2e-23 111.3 73 75.3
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 2.1e-22 109.8 146 45.9
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 3.6e-22 109.0 92 57.6
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 4.7e-22 108.6 92 58.7
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 6.1e-22 108.2 75 70.7
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 6.1e-22 108.2 82 58.5
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 1.0e-21 107.5 110 47.3
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 1.4e-21 107.1 92 53.3
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 1.8e-21 106.7 96 59.4
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 1.8e-21 106.7 96 59.4
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 2.3e-21 106.3 106 55.7
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 3.0e-21 105.9 91 53.8
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 3.9e-21 105.5 85 60.0
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 5.2e-21 105.1 119 49.6
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 6.7e-21 104.8 93 58.1
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 8.8e-21 104.4 91 60.4
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.5e-20 103.6 92 53.3
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 2.0e-20 103.2 98 58.2
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.0e-20 103.2 87 55.2
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 3.3e-20 102.4 86 54.7
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 4.4e-20 102.1 93 57.0
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 4.4e-20 102.1 88 53.4
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 5.7e-20 101.7 92 56.5
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 5.7e-20 101.7 93 50.5
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 7.4e-20 101.3 74 64.9
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 9.7e-20 100.9 79 58.2
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 1.3e-19 100.5 86 53.5
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 3.7e-19 99.0 79 59.5
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 3.7e-19 99.0 108 50.0
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 3.7e-19 99.0 83 54.2
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 3.7e-19 99.0 82 56.1
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 4.8e-19 98.6 79 62.0
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 6.3e-19 98.2 84 54.8
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 6.3e-19 98.2 84 54.8
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 6.3e-19 98.2 85 55.3
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 8.2e-19 97.8 77 54.5
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 8.2e-19 97.8 83 55.4
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 1.1e-18 97.4 85 54.1
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 1.4e-18 97.1 96 49.0
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 1.4e-18 97.1 87 52.9
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 1.8e-18 96.7 84 53.6
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 1.8e-18 96.7 74 58.1
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 2.4e-18 96.3 106 45.3
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 3.1e-18 95.9 79 51.9
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 4.1e-18 95.5 86 48.8
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 4.1e-18 95.5 79 51.9
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 4.1e-18 95.5 86 48.8
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 5.3e-18 95.1 85 52.9
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 7.0e-18 94.7 90 50.0
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 7.0e-18 94.7 79 55.7
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 9.1e-18 94.4 79 51.9
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.6e-17 93.6 94 50.0
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 2.0e-17 93.2 87 56.3
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 2.6e-17 92.8 83 48.2
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 2.6e-17 92.8 77 54.5
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 2.6e-17 92.8 68 63.2
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 2.6e-17 92.8 85 51.8
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 4.5e-17 92.0 81 55.6
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 5.9e-17 91.7 106 41.5
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 5.9e-17 91.7 70 64.3
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 5.9e-17 91.7 72 56.9
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 7.7e-17 91.3 70 64.3
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 1.0e-16 90.9 89 46.1
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 1.0e-16 90.9 91 50.5
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 1.7e-16 90.1 84 48.8
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.7e-16 90.1 78 57.7
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.8e-16 89.0 85 55.3
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 8.5e-16 87.8 69 56.5
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 1.9e-15 86.7 77 53.2
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 1.9e-15 86.7 77 53.2
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 2.5e-15 86.3 83 49.4
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 3.2e-15 85.9 71 54.9
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 1.6e-14 83.6 87 46.0
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 1.6e-14 83.6 70 57.1
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 3.6e-14 82.4 81 50.6
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.4e-13 80.5 89 49.4
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 2.3e-13 79.7 85 45.9
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 5.2e-13 78.6 89 48.3
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 2.0e-12 76.6 68 54.4
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 1.7e-11 73.6 74 48.6
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 1.4e-10 70.5 60 58.3
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 2.4e-10 69.7 91 49.5
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 9.1e-10 67.8 89 44.9
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 2.0e-09 66.6 61 52.5
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 2.0e-09 66.6 101 39.6
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 7.7e-09 64.7 53 58.5
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 5.0e-08 62.0 94 46.8
SEGI_37086 Sequoiadendron giganteum HOM05D000262 ORTHO05D000300 1.5e-07 60.5 110 31.8
Duzib151G0401 Durio zibethinus HOM05D009285 ORTHO05D009865 1.6e-06 57.0 95 35.8
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 1.6e-06 57.0 44 59.1
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 3.6e-06 55.8 74 41.9
Nn1g07498 Nelumbo nucifera HOM05D001797 ORTHO05D001650 4.7e-06 55.5 94 27.7


User provided reference genes

Program Settings