Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 8.3e-205 716.8 370 100.0
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.0e-202 709.9 370 98.9
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 6.4e-197 690.6 370 96.2
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 3.1e-183 645.2 368 89.9
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 3.3e-177 625.2 369 86.2
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 4.0e-175 618.2 368 85.1
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.2e-171 606.7 383 82.0
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 3.5e-147 525.4 368 71.7
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 2.1e-139 499.6 367 67.6
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 8.7e-138 494.2 386 68.1
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.5e-137 492.7 367 67.0
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.2e-136 489.6 364 67.0
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 1.4e-135 486.9 367 66.2
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 3.9e-130 468.8 370 63.2
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 2.0e-129 466.5 370 63.5
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 3.3e-129 465.7 366 64.2
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 7.4e-129 464.5 368 63.9
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 9.7e-129 464.2 368 63.9
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.7e-128 463.4 368 63.6
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 8.2e-128 461.1 365 63.3
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.4e-127 460.3 383 60.8
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 8.5e-125 451.1 371 61.5
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.9e-124 449.9 366 62.8
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.2e-123 447.2 316 74.4
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 2.7e-123 446.0 367 62.4
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 2.6e-121 439.5 367 61.0
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 5.7e-121 438.3 368 59.5
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 1.7e-120 436.8 368 59.2
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 3.7e-120 435.6 368 59.5
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 6.3e-120 434.9 366 60.1
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 5.3e-119 431.8 370 58.4
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 1.2e-118 430.6 391 57.8
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 2.6e-118 429.5 368 57.6
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 2.9e-117 426.0 370 58.9
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 3.8e-117 425.6 364 58.5
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 3.8e-117 425.6 364 58.5
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 8.0e-115 417.9 364 56.6
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 3.0e-114 416.0 365 58.4
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 8.8e-114 414.5 364 57.4
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 1.5e-113 413.7 371 57.7
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 7.4e-113 411.4 363 59.2
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 2.8e-112 409.5 369 56.4
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 3.7e-112 409.1 368 55.2
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 4.8e-112 408.7 364 56.6
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 8.2e-112 407.9 368 58.2
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 1.4e-111 407.1 368 55.7
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 5.3e-111 405.2 368 54.3
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 5.3e-111 405.2 370 56.2
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 4.5e-110 402.1 364 57.1
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 1.0e-109 401.0 365 54.8
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 1.3e-109 400.6 368 57.1
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 1.7e-109 400.2 331 61.0
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 1.7e-109 400.2 368 57.6
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 3.8e-109 399.1 368 54.9
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 8.5e-109 397.9 319 63.0
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 3.2e-108 396.0 364 56.9
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 5.5e-108 395.2 366 54.1
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 9.4e-108 394.4 368 58.4
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.2e-107 394.0 368 57.9
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 1.2e-107 394.0 368 55.7
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 1.2e-107 394.0 366 55.7
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 1.6e-107 393.7 368 54.9
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 1.6e-107 393.7 367 55.3
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 4.7e-107 392.1 369 54.7
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 6.1e-107 391.7 365 54.8
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 8.0e-107 391.3 368 57.6
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 1.4e-106 390.6 365 53.7
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 1.4e-106 390.6 365 53.2
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 4.0e-106 389.0 368 53.0
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.2e-105 387.5 371 55.0
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.0e-105 386.7 367 54.2
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 7.5e-105 384.8 368 53.0
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.3e-104 384.0 365 54.0
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 2.8e-104 382.9 368 53.5
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 6.3e-104 381.7 369 52.6
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 6.3e-104 381.7 370 53.5
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 1.1e-103 380.9 365 53.7
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.1e-103 379.4 361 57.1
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 1.2e-102 377.5 369 51.2
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 4.5e-102 375.6 364 53.6
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 7.7e-102 374.8 366 52.7
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 3.8e-101 372.5 365 52.6
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 5.0e-101 372.1 405 48.4
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 1.9e-100 370.2 370 51.9
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 2.5e-100 369.8 363 52.3
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 3.2e-100 369.4 364 52.7
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 1.2e-99 367.5 366 52.2
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 1.6e-99 367.1 367 52.0
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 2.7e-99 366.3 366 52.2
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 3.6e-99 365.9 400 49.0
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 1.8e-98 363.6 379 50.1
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 3.0e-98 362.8 364 51.1
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 4.0e-98 362.5 366 52.2
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 5.2e-98 362.1 368 51.6
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 1.2e-97 360.9 366 52.2
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 2.6e-97 359.8 363 51.2
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 7.5e-97 358.2 312 58.0
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 2.8e-96 356.3 364 51.6
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 8.3e-96 354.8 366 50.5
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 8.3e-96 354.8 364 51.1
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 7.0e-95 351.7 366 49.7
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 9.1e-95 351.3 367 50.1
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 2.0e-94 350.1 400 47.5
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 2.0e-94 350.1 402 47.5
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 2.7e-94 349.7 353 51.6
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 5.9e-94 348.6 480 43.5
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 1.0e-93 347.8 365 49.9
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 2.3e-93 346.7 480 42.3
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 3.8e-93 345.9 376 48.9
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 5.0e-93 345.5 362 49.7
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 5.0e-93 345.5 350 52.0
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 5.6e-92 342.0 317 57.4
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 9.5e-92 341.3 281 58.7
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 2.1e-91 340.1 283 60.4
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 4.7e-91 339.0 369 49.1
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 1.0e-90 337.8 502 40.2
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 1.4e-90 337.4 313 55.0
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 4.0e-90 335.9 354 51.4
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 1.2e-89 334.3 355 49.3
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 2.0e-89 333.6 355 49.0
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 7.5e-89 331.6 355 49.0
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 4.1e-87 325.9 370 47.8
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 4.1e-87 325.9 368 48.9
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 7.0e-87 325.1 367 47.4
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 2.1e-83 313.5 314 52.2
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 2.8e-83 313.2 365 45.2
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 6.8e-82 308.5 310 53.9
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 1.2e-81 307.8 366 44.8
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 1.5e-81 307.4 210 73.3
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.6e-81 306.6 209 73.7
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 7.5e-81 305.1 560 37.1
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 6.6e-77 292.0 207 70.0
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.6e-75 287.3 210 69.0
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 5.1e-69 265.8 303 46.9
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 5.6e-68 262.3 318 47.8
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 8.9e-66 255.0 207 63.3
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.7e-64 249.6 218 58.7
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.4e-64 248.4 218 58.3
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 6.0e-62 242.3 316 42.1
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.3e-61 241.1 162 71.6
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 8.6e-61 238.4 310 44.8
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 3.3e-60 236.5 155 78.1
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 7.3e-60 235.3 164 70.7
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.6e-59 234.2 164 70.1
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 2.1e-59 233.8 161 68.9
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 2.8e-59 233.4 378 37.6
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 3.6e-59 233.0 164 70.1
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 6.2e-59 232.3 159 71.1
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.1e-58 229.9 167 69.5
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 1.2e-57 228.0 222 57.2
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.3e-56 224.6 161 69.6
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.9e-56 223.4 164 68.9
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.1e-55 221.5 341 38.7
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 1.6e-54 217.6 208 53.8
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 8.7e-53 211.8 122 86.9
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 2.8e-51 206.8 284 44.4
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 2.4e-50 203.8 204 52.9
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.3e-50 202.6 189 58.2
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 3.4e-49 199.9 380 33.7
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 2.1e-46 190.7 370 32.2
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 2.1e-46 190.7 373 33.0
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 7.9e-46 188.7 376 33.8
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 2.5e-44 183.7 138 66.7
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 5.6e-44 182.6 375 32.8
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 1.8e-42 177.6 374 32.1
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 4.5e-41 172.9 121 69.4
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 4.6e-38 162.9 163 52.1
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.7e-37 158.7 152 55.9
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 5.6e-36 156.0 257 37.7
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.8e-35 153.7 106 69.8
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 4.5e-33 146.4 136 56.6
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 4.9e-32 142.9 139 54.0
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 1.8e-29 134.4 173 41.6
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 1.1e-23 115.2 128 42.2
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 4.3e-20 103.2 284 28.2
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.0e-12 77.8 309 26.2


User provided reference genes

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