Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g037810 Solanum pennellii HOM05D007058 ORTHO05D009036 9.5e-248 859.8 444 100.0
Solyc03g118860.3 Solanum lycopersicum HOM05D007058 ORTHO05D009036 6.4e-244 847.0 444 98.6
PGSC0003DMG400005667 Solanum tuberosum HOM05D007058 ORTHO05D009036 2.2e-236 822.0 444 95.9
Nitab4.5_0006894g0050 Nicotiana tabacum HOM05D007058 ORTHO05D009036 4.9e-196 688.0 404 87.9
Nitab4.5_0001456g0070 Nicotiana tabacum HOM05D007058 ORTHO05D009036 1.1e-195 686.8 404 87.9
CAN.G1129.46 Capsicum annuum HOM05D007058 ORTHO05D009036 1.3e-193 679.9 408 86.3
Peaxi162Scf00683g00337 Petunia axillaris HOM05D007058 ORTHO05D009036 1.1e-187 660.2 402 83.8
Cc04_g06820 Coffea canephora HOM05D007058 ORTHO05D009036 1.5e-152 543.5 411 67.6
Dinv12229 Davidia involucrata HOM05D007058 ORTHO05D009036 1.3e-151 540.4 420 67.9
Lj9A424T33 Lonicera japonica HOM05D007058 ORTHO05D009036 1.3e-148 530.4 443 64.6
Hma1.2p1_2594F.1_g325085 Hydrangea macrophylla HOM05D007058 ORTHO05D009036 1.7e-148 530.0 432 64.4
Hma1.2p1_1614F.1_g293670 Hydrangea macrophylla HOM05D007058 ORTHO05D009036 2.8e-146 522.7 403 67.2
GSVIVG01008345001 Vitis vinifera HOM05D007058 ORTHO05D009036 2.2e-143 513.1 412 65.5
QL10p026796 Quercus lobata HOM05D007058 ORTHO05D009036 2.0e-141 506.5 434 61.8
Ciclev10020201m.g Citrus clementina HOM05D007058 ORTHO05D009036 3.3e-139 499.2 440 60.9
Gohir.A07G059500 Gossypium hirsutum HOM05D007058 ORTHO05D009036 4.7e-138 495.4 416 61.8
Actinidia02670 Actinidia chinensis HOM05D007058 ORTHO05D009036 1.8e-137 493.4 421 63.7
Thecc.03G043100 Theobroma cacao HOM05D007058 ORTHO05D009036 2.3e-137 493.0 414 62.8
Duzib205G0828 Durio zibethinus HOM05D007058 ORTHO05D009036 2.9e-135 486.1 410 61.7
Sc12g0007400 Simmondsia chinensis HOM05D007058 ORTHO05D009036 2.4e-134 483.0 414 60.4
TWI60G0394 Tripterygium wilfordii HOM05D007058 ORTHO05D009036 4.1e-134 482.3 433 59.4
Cpa.g.sc3.458 Carica papaya HOM05D007058 ORTHO05D009036 7.0e-134 481.5 402 61.4
Manes.01G015400 Manihot esculenta HOM05D007058 ORTHO05D009036 1.6e-133 480.3 415 60.2
COL.COLO4_38517 Corchorus olitorius HOM05D007058 ORTHO05D009036 2.0e-133 479.9 426 59.9
Nn3g17960 Nelumbo nucifera HOM05D007058 ORTHO05D009036 7.8e-133 478.0 412 60.2
Hund02350 Selenicereus undatus HOM05D007058 ORTHO05D009036 7.8e-133 478.0 425 59.1
Migut.I00419 Erythranthe guttata HOM05D007058 ORTHO05D009036 2.3e-132 476.5 383 62.9
FAN18G2897 Fragaria x ananassa HOM05D007058 ORTHO05D009036 2.3e-132 476.5 410 62.7
TAR629G3445 Trochodendron aralioides HOM05D007058 ORTHO05D009036 2.3e-132 476.5 411 61.6
FAN08G1503 Fragaria x ananassa HOM05D007058 ORTHO05D009036 5.0e-132 475.3 410 62.9
Potri.012G053600 Populus trichocarpa HOM05D007058 ORTHO05D009036 8.6e-132 474.6 415 60.5
TAR535G0005 Trochodendron aralioides HOM05D007058 ORTHO05D009036 1.1e-131 474.2 405 62.5
Prupe.5G225300 Prunus persica HOM05D007058 ORTHO05D009036 1.5e-131 473.8 432 60.9
RcHm_v2.0_Chr7g0179381 Rosa chinensis HOM05D007058 ORTHO05D009036 1.5e-131 473.8 425 61.6
Atru.chr9.916 Acer truncatum HOM05D007058 ORTHO05D009036 2.5e-131 473.0 448 57.6
FAN04G2101 Fragaria x ananassa HOM05D007058 ORTHO05D009036 1.2e-130 470.7 410 62.7
arahy.Tifrunner.gnm1.ann1.8NC01M Arachis hypogaea HOM05D007058 ORTHO05D009036 2.1e-130 469.9 416 58.2
FAN13G1457 Fragaria x ananassa HOM05D007058 ORTHO05D009036 2.8e-130 469.5 410 62.2
Sabra12G0037400 Salix brachista HOM05D007058 ORTHO05D009036 3.1e-129 466.1 398 61.3
MBI16_g25105_MAGBIO Magnolia biondii HOM05D007058 ORTHO05D009036 8.9e-129 464.5 436 57.1
MELO3C002112.2 Cucumis melo HOM05D007058 ORTHO05D009036 3.4e-128 462.6 438 58.0
Sed0017039 Sechium edule HOM05D007058 ORTHO05D009036 3.4e-128 462.6 402 60.9
MD06G1220900 Malus domestica HOM05D007058 ORTHO05D009036 5.8e-128 461.8 408 61.8
Aqoxy3G04055 Aquilegia oxysepala HOM05D007058 ORTHO05D009036 7.5e-128 461.5 412 59.7
CANSAT80G0903 Cannabis sativa HOM05D007058 ORTHO05D009036 9.8e-128 461.1 437 58.4
TAR371G0970 Trochodendron aralioides HOM05D007058 ORTHO05D009036 1.7e-127 460.3 406 60.8
arahy.Tifrunner.gnm1.ann1.LC4GJT Arachis hypogaea HOM05D007058 ORTHO05D009036 3.7e-127 459.1 412 57.8
ClCG04G010870 Citrullus lanatus HOM05D007058 ORTHO05D009036 1.9e-126 456.8 408 59.6
PGR044G0638 Punica granatum HOM05D007058 ORTHO05D009036 1.9e-126 456.8 394 62.4
PSO063G1254 Papaver somniferum HOM05D007058 ORTHO05D009036 3.2e-126 456.1 438 56.6
CsaV3_1G006960 Cucumis sativus L. HOM05D007058 ORTHO05D009036 4.1e-126 455.7 436 57.1
EL10Ac5g11484 Beta vulgaris HOM05D007058 ORTHO05D009036 3.5e-125 452.6 400 58.8
MD14G1230300 Malus domestica HOM05D007058 ORTHO05D009036 1.0e-124 451.1 405 61.2
PSO782G5502 Papaver somniferum HOM05D007058 ORTHO05D009036 1.7e-124 450.3 416 58.7
THA.LOC104813907 Tarenaya hassleriana HOM05D007058 ORTHO05D009036 7.3e-123 444.9 406 57.6
AUR62033787 Chenopodium quinoa HOM05D007058 ORTHO05D009036 1.4e-121 440.7 425 55.5
Haze_18744 Corylus avellana HOM05D007058 ORTHO05D009036 1.8e-121 440.3 402 59.7
Lj4g0007182 Lotus japonicus HOM05D007058 ORTHO05D009036 5.8e-120 435.3 437 54.7
ATR0681G321 Amborella trichopoda HOM05D007058 ORTHO05D009036 2.1e-117 426.8 402 56.2
Oeu017513.1 Olea europaea HOM05D007058 ORTHO05D009036 6.0e-117 425.2 340 64.7
HPP92_023400 Vanilla planifolia HOM05D007058 ORTHO05D009036 1.1e-115 421.0 407 53.3
Thhalv10018574m.g Eutrema salsugineum HOM05D007058 ORTHO05D009036 2.1e-114 416.8 440 49.5
Eucgr.K02237 Eucalyptus grandis HOM05D007058 ORTHO05D009036 3.6e-114 416.0 346 63.3
C06p47890 Brassica napus HOM05D007058 ORTHO05D009036 2.6e-112 409.8 436 49.3
BolC6t39824H Brassica oleracea HOM05D007058 ORTHO05D009036 2.6e-112 409.8 436 49.3
VMungo0251G0619 Vigna mungo HOM05D007058 ORTHO05D009036 4.4e-112 409.1 393 55.0
A07p39600 Brassica napus HOM05D007058 ORTHO05D009036 5.8e-112 408.7 436 48.9
Sp5g28930 Schrenkiella parvula HOM05D007058 ORTHO05D009036 9.9e-112 407.9 435 49.2
BcaB03g15080 Brassica carinata HOM05D007058 ORTHO05D009036 2.9e-111 406.4 425 50.1
CARHR066810 Cardamine hirsuta HOM05D007058 ORTHO05D009036 2.9e-111 406.4 433 50.6
BraA07t31509Z Brassica rapa HOM05D007058 ORTHO05D009036 8.4e-111 404.8 430 48.8
Carub.0002s2049 Capsella rubella HOM05D007058 ORTHO05D009036 8.4e-111 404.8 438 49.8
Aa31LG4G4070 Aethionema arabicum HOM05D007058 ORTHO05D009036 9.3e-110 401.4 425 52.0
AL2G33550 Arabidopsis lyrata HOM05D007058 ORTHO05D009036 2.1e-109 400.2 441 48.5
AT1G73740 Arabidopsis thaliana HOM05D007058 ORTHO05D009036 3.5e-109 399.4 437 49.0
Gorai.001G067900 Gossypium raimondii HOM05D007058 ORTHO05D009036 1.1e-105 387.9 350 58.9
HPP92_027335 Vanilla planifolia HOM05D007058 ORTHO05D009036 2.1e-98 363.6 429 47.8
HPP92_017197 Vanilla planifolia HOM05D007058 ORTHO05D009036 4.8e-98 362.5 429 47.8
Phvul.002G325300 Phaseolus vulgaris HOM05D007058 ORTHO05D009036 1.3e-95 354.4 337 54.0
AUR62029919 Chenopodium quinoa HOM05D007058 ORTHO05D009036 7.1e-94 348.6 342 55.0
Mapoly0014s0012 Marchantia polymorpha HOM05D007058 ORTHO05D009036 3.3e-91 339.7 421 45.8
FvH4_5g16720 Fragaria vesca HOM05D007058 ORTHO05D009036 7.1e-86 322.0 293 58.7
SMO271G0182 Selaginella moellendorffii HOM05D007058 ORTHO05D009036 1.9e-83 313.9 375 47.7
Rhsim08G0129700 Rhododendron simsii HOM05D007058 ORTHO05D009036 7.4e-83 312.0 263 61.6
Glyma.05G242000 Glycine max HOM05D007058 ORTHO05D009036 9.6e-83 311.6 326 50.9
Pp3c1_26880 Physcomitrium patens HOM05D007058 ORTHO05D009036 2.8e-82 310.1 410 42.4
Mapoly0014s0018 Marchantia polymorpha HOM05D007058 ORTHO05D009036 1.4e-81 307.8 384 46.1
SMO308G0041 Selaginella moellendorffii HOM05D007058 ORTHO05D009036 3.5e-77 293.1 411 43.8
AagrBONN_evm.TU.Sc2ySwM_228.2408 Anthoceros agrestis HOM05D007058 ORTHO05D009036 4.5e-72 276.2 306 49.0
Gohir.D07G064300 Gossypium hirsutum HOM05D007058 ORTHO05D009036 5.7e-67 259.2 239 58.2
Os01g0516700 Oryza sativa ssp. japonica HOM05D007058 ORTHO05D009036 8.5e-63 245.4 315 44.1
MCO02G081 Micromonas commoda HOM05D007058 ORTHO05D009036 6.7e-60 235.7 397 37.8
PRCOL_00000956 Prasinoderma coloniale HOM05D007058 ORTHO05D009036 1.4e-57 228.0 388 36.9
CAN.G1074.8 Capsicum annuum HOM05D007058 ORTHO05D009036 2.7e-53 213.8 128 82.0
CBR_g74658 Chara braunii HOM05D007058 ORTHO05D009036 9.7e-51 205.3 596 28.2
Glyma.08G049500 Glycine max HOM05D007058 ORTHO05D009036 4.4e-43 179.9 241 41.9
Zm00001eb132130 Zea mays HOM05D007058 ORTHO05D009036 1.6e-40 171.4 248 38.7
Glyma.08G049450 Glycine max HOM05D007058 ORTHO05D009036 3.8e-39 166.8 116 71.6
arahy.Tifrunner.gnm1.ann1.4SU3WD Arachis hypogaea HOM05D007058 ORTHO05D009036 1.1e-30 138.7 134 53.7
CAN.G507.4 Capsicum annuum HOM05D006747 ORTHO05D008384 1.5e-30 138.3 79 86.1
CAN.G169.6 Capsicum annuum HOM05D007058 ORTHO05D009036 5.6e-30 136.3 125 60.8
SalBow5G0499 Salvia bowleyana HOM05D007058 ORTHO05D010040 6.1e-29 132.9 134 54.5
Cre12.g527950 Chlamydomonas reinhardtii HOM05D007058 ORTHO05D009036 3.9e-23 113.6 373 26.8
Gorai.001G067800 Gossypium raimondii HOM05D007058 ORTHO05D009036 2.5e-22 110.9 83 69.9
AUR62029918 Chenopodium quinoa HOM05D007058 ORTHO05D009036 6.8e-20 102.8 78 64.1
Ah.11g045170 Amaranthus hybridus HOM05D007058 ORTHO05D009036 3.4e-19 100.5 81 64.2
SEGI_28231 Sequoiadendron giganteum HOM05D007058 ORTHO05D009036 1.7e-18 98.2 77 63.6
CAN.G1376.1 Capsicum annuum HOM05D004980 ORTHO05D021411 2.5e-14 84.3 138 40.6
Gohir.D07G064250 Gossypium hirsutum HOM05D007058 ORTHO05D009036 1.2e-13 82.0 64 68.8
BcaC08g46795 Brassica carinata HOM05D007058 ORTHO05D009036 5.2e-12 76.6 97 43.3
arahy.Tifrunner.gnm1.ann1.MMR300 Arachis hypogaea HOM05D007058 ORTHO05D009036 2.2e-10 71.2 61 62.3
Rhsim08G0129900 Rhododendron simsii HOM05D007058 ORTHO05D009036 8.3e-10 69.3 45 75.6
Rhsim08G0129800 Rhododendron simsii HOM05D007058 ORTHO05D021411 2.7e-08 64.3 37 86.5
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 3.9e-07 60.5 73 47.9
CAN.G1014.20 Capsicum annuum HOM05D007058 ORTHO05D021411 3.3e-06 57.4 37 75.7


User provided reference genes

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