Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g037370 Solanum pennellii HOM05D008005 ORTHO05D010167 1.3e-75 286.2 138 100.0
Solyc03g118490.4 Solanum lycopersicum HOM05D008005 ORTHO05D010167 2.7e-68 261.9 130 97.7
CAN.G843.36 Capsicum annuum HOM05D008005 ORTHO05D010167 7.0e-32 141.0 174 48.3
Sopen03g037360 Solanum pennellii HOM05D008005 ORTHO05D010167 2.3e-30 136.0 176 47.7
PGSC0003DMG400014185 Solanum tuberosum HOM05D008005 ORTHO05D010167 2.9e-30 135.6 176 48.9
Solyc03g118480.4 Solanum lycopersicum HOM05D008005 ORTHO05D010167 3.8e-30 135.2 176 47.2
Nitab4.5_0002450g0160 Nicotiana tabacum HOM05D008005 ORTHO05D010167 7.2e-29 131.0 187 44.9
Cc04_g05990 Coffea canephora HOM05D008005 ORTHO05D010167 2.1e-28 129.4 172 46.5
SalBow1G4696 Salvia bowleyana HOM05D008005 ORTHO05D010167 2.8e-28 129.0 163 46.6
CAN.G843.35 Capsicum annuum HOM05D008005 ORTHO05D010167 6.1e-28 127.9 174 46.0
Migut.D01198 Erythranthe guttata HOM05D008005 ORTHO05D010167 4.4e-26 121.7 167 43.1
SGA_v2.0_scaffold74G24656 Striga asiatica HOM05D008005 ORTHO05D010167 4.4e-26 121.7 173 44.5
Lsat_1_v5_gn_4_136781 Lactuca sativa HOM05D008005 ORTHO05D010167 1.7e-25 119.8 178 42.7
Oeu031763.2 Olea europaea HOM05D008005 ORTHO05D010167 2.9e-25 119.0 169 45.0
HanXRQChr09g0260271 Helianthus annuus HOM05D008005 ORTHO05D010167 8.3e-25 117.5 175 43.4
Lj5A160T65 Lonicera japonica HOM05D008005 ORTHO05D010167 2.4e-24 115.9 187 42.2
ClCG04G010500 Citrullus lanatus HOM05D008005 ORTHO05D010167 1.0e-22 110.5 161 41.6
Gohir.D11G002000 Gossypium hirsutum HOM05D008005 ORTHO05D010167 1.7e-22 109.8 186 38.2
Gorai.007G003000 Gossypium raimondii HOM05D008005 ORTHO05D010167 1.7e-22 109.8 186 38.2
Dinv06227 Davidia involucrata HOM05D008005 ORTHO05D010167 2.9e-22 109.0 195 37.4
Gohir.A11G002400 Gossypium hirsutum HOM05D008005 ORTHO05D010167 8.6e-22 107.5 186 38.2
Thecc.03G060400 Theobroma cacao HOM05D008005 ORTHO05D010167 1.1e-21 107.1 186 38.2
MELO3C002145.2 Cucumis melo HOM05D008005 ORTHO05D010167 1.9e-21 106.3 183 39.3
Hma1.2p1_0471F.1_g159540 Hydrangea macrophylla HOM05D000694 ORTHO05D010167 2.5e-21 105.9 178 39.3
ECA232G3026 Erigeron canadensis HOM05D008005 ORTHO05D010167 9.5e-21 104.0 185 41.1
arahy.Tifrunner.gnm1.ann1.XPH37R Arachis hypogaea HOM05D008005 ORTHO05D010167 1.2e-20 103.6 176 38.1
PSO017G5830 Papaver somniferum HOM05D008005 ORTHO05D010167 1.2e-20 103.6 176 38.6
CSS0001937 Camellia sinensis var. sinensis HOM05D008005 ORTHO05D010167 1.6e-20 103.2 105 49.5
CSS0042837 Camellia sinensis var. sinensis HOM05D008005 ORTHO05D010167 1.6e-20 103.2 105 49.5
CANSAT80G1038 Cannabis sativa HOM05D008005 ORTHO05D010167 2.1e-20 102.8 58 69.0
PSO478G5097 Papaver somniferum HOM05D008005 ORTHO05D010167 2.8e-20 102.4 176 39.2
Aqoxy7G03647 Aquilegia oxysepala HOM05D008005 ORTHO05D010167 3.6e-20 102.1 56 73.2
Prupe.5G235800 Prunus persica HOM05D008005 ORTHO05D010167 4.7e-20 101.7 184 38.6
Peaxi162Scf00314g00438 Petunia axillaris HOM05D008005 ORTHO05D010167 6.1e-20 101.3 154 40.3
RcHm_v2.0_Chr7g0178051 Rosa chinensis HOM05D008005 ORTHO05D010167 6.1e-20 101.3 56 71.4
Glyma.09G173700 Glycine max HOM05D008005 ORTHO05D010167 8.0e-20 100.9 170 37.1
CsaV3_1G007290 Cucumis sativus L. HOM05D008005 ORTHO05D010167 1.0e-19 100.5 103 46.6
TAR371G1097 Trochodendron aralioides HOM05D008005 ORTHO05D010167 1.0e-19 100.5 131 43.5
Sed0026882 Sechium edule HOM05D008005 ORTHO05D010167 1.4e-19 100.1 56 67.9
FAN04G2662 Fragaria x ananassa HOM05D008005 ORTHO05D010167 1.8e-19 99.8 171 37.4
Psat0s1622g0040 Pisum sativum HOM05D008005 ORTHO05D010167 1.8e-19 99.8 182 35.7
arahy.Tifrunner.gnm1.ann1.JDY7EF Arachis hypogaea HOM05D008005 ORTHO05D010167 2.3e-19 99.4 175 37.1
GSVIVG01008470001 Vitis vinifera HOM05D008005 ORTHO05D010167 2.3e-19 99.4 191 35.6
Nn3g18346 Nelumbo nucifera HOM05D008005 ORTHO05D010167 4.0e-19 98.6 115 43.5
PGR083G0418 Punica granatum HOM05D008005 ORTHO05D010167 4.0e-19 98.6 191 36.1
Lj2g0010202 Lotus japonicus HOM05D008005 ORTHO05D010167 1.2e-18 97.1 58 65.5
QL10p031281 Quercus lobata HOM05D008005 ORTHO05D010167 1.2e-18 97.1 200 35.5
Zm00001eb054920 Zea mays HOM05D008005 ORTHO05D010167 1.2e-18 97.1 58 67.2
Medtr6g070950 Medicago truncatula HOM05D008005 ORTHO05D010167 1.5e-18 96.7 58 65.5
FAN13G0617 Fragaria x ananassa HOM05D008005 ORTHO05D010167 2.0e-18 96.3 135 38.5
FvH4_5g17610 Fragaria vesca HOM05D008005 ORTHO05D010167 2.6e-18 95.9 119 41.2
Eucgr.H00548 Eucalyptus grandis HOM05D008005 ORTHO05D010167 4.4e-18 95.1 56 66.1
Eucgr.L01714 Eucalyptus grandis HOM05D008005 ORTHO05D010167 4.4e-18 95.1 56 66.1
Phvul.004G148600 Phaseolus vulgaris HOM05D008005 ORTHO05D010167 4.4e-18 95.1 108 47.2
Sabra12G0031100 Salix brachista HOM05D008005 ORTHO05D010167 4.4e-18 95.1 56 66.1
Ca_25353_v3 Cicer arietinum L. HOM05D008005 ORTHO05D010167 7.5e-18 94.4 105 45.7
Manes.14G157200 Manihot esculenta HOM05D008005 ORTHO05D010167 9.8e-18 94.0 56 64.3
Os03g0712100 Oryza sativa ssp. japonica HOM05D008005 ORTHO05D010167 1.7e-17 93.2 58 63.8
VMungo0464G0023 Vigna mungo HOM05D008005 ORTHO05D010167 1.7e-17 93.2 143 38.5
Duzib068G0076 Durio zibethinus HOM05D008005 ORTHO05D010167 2.9e-17 92.4 117 41.9
HPP92_026559 Vanilla planifolia HOM05D008005 ORTHO05D010167 1.4e-16 90.1 152 39.5
Potri.012G044400 Populus trichocarpa HOM05D008005 ORTHO05D010167 3.2e-16 89.0 56 60.7
HPP92_026532 Vanilla planifolia HOM05D008005 ORTHO05D010167 7.0e-16 87.8 152 38.8
ATR0753G135 Amborella trichopoda HOM05D008005 ORTHO05D010167 9.2e-16 87.4 108 44.4
SEGI_16537 Sequoiadendron giganteum HOM05D008005 ORTHO05D010167 1.1e-13 80.5 110 39.1
CBR_g40493 Chara braunii HOM05D008005 ORTHO05D010167 1.2e-12 77.0 58 51.7
CBR_g79093 Chara braunii HOM05D008005 ORTHO05D010167 2.3e-11 72.8 57 50.9
Cre09.g387615 Chlamydomonas reinhardtii HOM05D008005 ORTHO05D010167 3.1e-11 72.4 57 52.6
CBR_g28017 Chara braunii HOM05D008005 ORTHO05D010167 4.0e-11 72.0 57 49.1
Nn4g26641 Nelumbo nucifera HOM05D008005 ORTHO05D010167 2.4e-08 62.8 44 59.1
Haze_18901 Corylus avellana HOM05D008005 ORTHO05D010167 5.4e-08 61.6 32 75.0
CBR_g40489 Chara braunii HOM05D008005 ORTHO05D010167 3.9e-06 55.5 55 45.5


User provided reference genes

Program Settings