Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g037230 Solanum pennellii HOM05D000021 ORTHO05D000010 7.8e-100 367.5 234 100.0
PGSC0003DMG400038191 Solanum tuberosum HOM05D000021 ORTHO05D000010 2.3e-43 179.9 148 93.2
CAN.G843.22 Capsicum annuum HOM05D000021 ORTHO05D000010 3.2e-21 106.3 380 27.6
BcaB05g24092 Brassica carinata HOM05D000021 ORTHO05D000010 2.0e-15 87.0 189 46.0
CiPaw.13G078900 Carya illinoinensis HOM05D000021 ORTHO05D000010 3.5e-15 86.3 178 49.4
QL12p027370 Quercus lobata HOM05D000021 ORTHO05D000010 4.5e-15 85.9 148 60.1
BcaB01g04575 Brassica carinata HOM05D000021 ORTHO05D000010 2.8e-12 76.6 157 47.8
TAR365G0881 Trochodendron aralioides HOM05D000021 ORTHO05D004727 2.8e-12 76.6 148 55.4
CSS0024058 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 6.1e-12 75.5 130 53.8
QL04p035482 Quercus lobata HOM05D000021 ORTHO05D000010 6.1e-12 75.5 124 44.4
CSS0029676 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 2.3e-11 73.6 130 52.3
Eucgr.J01920 Eucalyptus grandis HOM05D000021 ORTHO05D000010 3.0e-11 73.2 151 46.4
Solyc03g118330.3 Solanum lycopersicum HOM05D000021 ORTHO05D000010 3.0e-11 73.2 38 92.1
BcaB01g04578 Brassica carinata HOM05D000021 ORTHO05D000010 4.0e-11 72.8 182 44.0
FAN03G0849 Fragaria x ananassa HOM05D000021 ORTHO05D000010 6.8e-11 72.0 146 58.2
CAN.G341.15 Capsicum annuum HOM05D000021 ORTHO05D000010 7.5e-10 68.6 127 31.5
Cc08_g08770 Coffea canephora HOM05D000021 ORTHO05D000010 1.3e-09 67.8 122 32.0
MBI14_g39237_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 1.7e-09 67.4 155 56.1
AUR62027194 Chenopodium quinoa HOM05D000021 ORTHO05D000010 3.7e-09 66.2 152 29.6
QL10p043652 Quercus lobata HOM05D000021 ORTHO05D000010 3.7e-09 66.2 125 45.6
CSS0007625 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 6.3e-09 65.5 142 26.8
QL01p037945 Quercus lobata HOM05D000021 ORTHO05D000010 8.3e-09 65.1 120 66.7
CAN.G1631.1 Capsicum annuum HOM05D000021 ORTHO05D000010 1.1e-08 64.7 110 58.2
MD01G1151600 Malus domestica HOM05D000021 ORTHO05D000010 1.4e-08 64.3 132 26.5
CARHR155700 Cardamine hirsuta HOM05D000021 ORTHO05D000010 1.8e-08 63.9 195 25.1
Medtr2g072640 Medicago truncatula HOM05D000021 ORTHO05D000010 1.8e-08 63.9 154 55.2
Oeu001610.1 Olea europaea HOM05D000021 ORTHO05D000010 1.8e-08 63.9 110 38.2
Glyma.07G147800 Glycine max HOM05D000021 ORTHO05D000010 2.4e-08 63.5 145 58.6
PGSC0003DMG400015283 Solanum tuberosum HOM05D000021 ORTHO05D000010 2.4e-08 63.5 118 35.6
AL6G32010 Arabidopsis lyrata HOM05D000021 ORTHO05D000010 3.1e-08 63.2 111 64.0
CSS0016098 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 3.1e-08 63.2 146 40.4
AUR62027895 Chenopodium quinoa HOM05D000021 ORTHO05D000010 3.1e-08 63.2 158 38.6
AT5G20480 Arabidopsis thaliana HOM05D000021 ORTHO05D000010 4.1e-08 62.8 111 53.2
Aa31LG4G14420 Aethionema arabicum HOM05D000021 ORTHO05D000010 5.4e-08 62.4 169 46.7
CSS0028176 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 5.4e-08 62.4 101 74.3
Thhalv10002388m.g Eutrema salsugineum HOM05D000021 ORTHO05D000010 5.4e-08 62.4 124 56.5
AUR62036015 Chenopodium quinoa HOM05D000021 ORTHO05D000010 7.0e-08 62.0 158 38.0
Carub.0006s1881 Capsella rubella HOM05D000021 ORTHO05D000010 9.2e-08 61.6 111 64.9
Gohir.D10G246608 Gossypium hirsutum HOM05D000021 ORTHO05D000010 9.2e-08 61.6 149 53.7
MD05G1075800 Malus domestica HOM05D000021 ORTHO05D000010 9.2e-08 61.6 126 30.2
Oeu001606.1 Olea europaea HOM05D000021 ORTHO05D000010 9.2e-08 61.6 157 42.0
TPR.G34462 Trifolium pratense HOM05D000021 ORTHO05D000010 9.2e-08 61.6 145 55.9
CAN.G394.122 Capsicum annuum HOM05D000021 ORTHO05D000010 1.2e-07 61.2 103 75.7
FAN01G0185 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.2e-07 61.2 142 40.1
Nitab4.5_0004612g0060 Nicotiana tabacum HOM05D000021 ORTHO05D000010 1.2e-07 61.2 119 36.1
QL04p015639 Quercus lobata HOM05D000021 ORTHO05D000010 1.2e-07 61.2 132 59.8
Rhsim09G0176100 Rhododendron simsii HOM05D000021 ORTHO05D000010 1.2e-07 61.2 157 28.7
Sopen03g029640 Solanum pennellii HOM05D000021 ORTHO05D000010 1.2e-07 61.2 118 34.7
vmacro14735 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 1.2e-07 61.2 159 33.3
CAN.G1909.6 Capsicum annuum HOM05D000021 ORTHO05D000010 1.6e-07 60.8 152 28.3
FAN01G1164 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.6e-07 60.8 135 61.5
Peaxi162Scf00540g00523 Petunia axillaris HOM05D000021 ORTHO05D000010 2.0e-07 60.5 114 66.7
QL04p017271 Quercus lobata HOM05D000021 ORTHO05D000010 2.0e-07 60.5 82 43.9
Gohir.D10G227350 Gossypium hirsutum HOM05D000021 ORTHO05D000010 2.7e-07 60.1 150 54.0
Nitab4.5_0001180g0230 Nicotiana tabacum HOM05D000021 ORTHO05D000010 2.7e-07 60.1 119 34.5
Oeu001631.1 Olea europaea HOM05D000021 ORTHO05D000010 2.7e-07 60.1 100 69.0
vmacro02970 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 2.7e-07 60.1 51 52.9
Aa31LG4G14470 Aethionema arabicum HOM05D000021 ORTHO05D000010 3.5e-07 59.7 167 49.1
Peaxi162Scf00540g00520 Petunia axillaris HOM05D000021 ORTHO05D000010 4.5e-07 59.3 118 64.4
QL04p017464 Quercus lobata HOM05D000021 ORTHO05D000010 4.5e-07 59.3 119 30.3
AL5G26370 Arabidopsis lyrata HOM05D000021 ORTHO05D000010 5.9e-07 58.9 125 57.6
GSVIVG01032850001 Vitis vinifera HOM05D000021 ORTHO05D000010 5.9e-07 58.9 127 28.3
MD07G1090900 Malus domestica HOM05D000021 ORTHO05D000010 7.8e-07 58.5 130 60.8
Medtr5g026760 Medicago truncatula HOM05D000021 ORTHO05D000010 7.8e-07 58.5 134 56.0
Prupe.7G044200 Prunus persica HOM05D000021 ORTHO05D000010 7.8e-07 58.5 152 52.6
QL04p017133 Quercus lobata HOM05D000021 ORTHO05D000010 7.8e-07 58.5 119 32.8
Sed0021819 Sechium edule HOM05D000021 ORTHO05D000010 7.8e-07 58.5 53 49.1
Sc14g0005310 Simmondsia chinensis HOM05D000021 ORTHO05D000010 7.8e-07 58.5 149 27.5
Solyc06g076910.3 Solanum lycopersicum HOM05D000021 ORTHO05D000010 7.8e-07 58.5 116 67.2
Sopen06g033300 Solanum pennellii HOM05D000021 ORTHO05D000010 7.8e-07 58.5 115 67.8
Sopen07g007280 Solanum pennellii HOM05D000021 ORTHO05D000010 7.8e-07 58.5 134 53.7
Thecc.04G140700 Theobroma cacao HOM05D000021 ORTHO05D000010 7.8e-07 58.5 117 59.8
arahy.Tifrunner.gnm1.ann1.W7QNR3 Arachis hypogaea HOM05D000021 ORTHO05D000010 1.0e-06 58.2 132 28.0
BcaB03g16482 Brassica carinata HOM05D000021 ORTHO05D000010 1.0e-06 58.2 136 26.5
Sc23g0001320 Simmondsia chinensis HOM05D000021 ORTHO05D000010 1.0e-06 58.2 166 37.3
PGSC0003DMG402020019 Solanum tuberosum HOM05D000021 ORTHO05D000010 1.0e-06 58.2 143 26.6
Carub.0219s0001 Capsella rubella HOM05D000021 ORTHO05D000010 1.3e-06 57.8 108 34.3
CAN.G1909.13 Capsicum annuum HOM05D000021 ORTHO05D000010 1.3e-06 57.8 126 31.0
Ciclev10013557m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.3e-06 57.8 115 30.4
Eucgr.G03051 Eucalyptus grandis HOM05D000021 ORTHO05D000010 1.3e-06 57.8 149 57.0
SalBow3G2570 Salvia bowleyana HOM05D000021 ORTHO05D000010 1.3e-06 57.8 51 47.1
CSS0025891 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 1.7e-06 57.4 132 43.9
Lj3A539T32 Lonicera japonica HOM05D043500 ORTHO05D016322 1.7e-06 57.4 125 44.0
Nitab4.5_0001180g0290 Nicotiana tabacum HOM05D000021 ORTHO05D000010 1.7e-06 57.4 51 52.9
Sp1g34070 Schrenkiella parvula HOM05D000021 ORTHO05D000010 1.7e-06 57.4 125 53.6
C03p33500 Brassica napus HOM05D000021 ORTHO05D000010 2.3e-06 57.0 169 27.2
ECA236G2320 Erigeron canadensis HOM05D000021 ORTHO05D000010 2.3e-06 57.0 151 27.8
Glyma.09G216400 Glycine max HOM05D000021 ORTHO05D000010 2.3e-06 57.0 62 41.9
Manes.07G015300 Manihot esculenta HOM05D000021 ORTHO05D000010 2.3e-06 57.0 64 42.2
Medtr5g025860 Medicago truncatula HOM05D000021 ORTHO05D000010 2.3e-06 57.0 61 42.6
PGR044G1901 Punica granatum HOM05D000021 ORTHO05D000010 2.3e-06 57.0 123 56.9
QL04p015831 Quercus lobata HOM05D000021 ORTHO05D000010 2.3e-06 57.0 86 38.4
QL09p051572 Quercus lobata HOM05D000021 ORTHO05D000010 2.3e-06 57.0 118 25.4
Rhsim09G0173800 Rhododendron simsii HOM05D000021 ORTHO05D000010 2.3e-06 57.0 148 32.4
Solyc10g085110.3 Solanum lycopersicum HOM05D000021 ORTHO05D000010 2.3e-06 57.0 156 39.7
BolC3t13820H Brassica oleracea HOM05D000021 ORTHO05D000010 2.9e-06 56.6 189 39.7
AUR62016691 Chenopodium quinoa HOM05D000021 ORTHO05D000010 2.9e-06 56.6 47 48.9
Gohir.D10G246616 Gossypium hirsutum HOM05D000021 ORTHO05D000010 2.9e-06 56.6 149 53.7
Lalb_Chr16g0380401 Lupinus albus HOM05D000021 ORTHO05D000010 2.9e-06 56.6 61 42.6
MBI14_g06613_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 2.9e-06 56.6 139 30.2
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 2.9e-06 56.6 135 58.5
QL01p037912 Quercus lobata HOM05D000021 ORTHO05D000010 2.9e-06 56.6 99 65.7
QL04p020979 Quercus lobata HOM05D000021 ORTHO05D000010 2.9e-06 56.6 119 30.3
QL04p078730 Quercus lobata HOM05D000021 ORTHO05D000010 2.9e-06 56.6 119 30.3
QL05p004684 Quercus lobata HOM05D000021 ORTHO05D000010 2.9e-06 56.6 103 32.0
QL10p043657 Quercus lobata HOM05D000021 ORTHO05D000010 2.9e-06 56.6 103 32.0
CSS0012859 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 3.8e-06 56.2 59 37.3
AUR62003269 Chenopodium quinoa HOM05D000021 ORTHO05D000010 3.8e-06 56.2 55 43.6
Cc01_g14110 Coffea canephora HOM05D000021 ORTHO05D000010 3.8e-06 56.2 86 39.5
Gorai.011G284900 Gossypium raimondii HOM05D000021 ORTHO05D000010 3.8e-06 56.2 147 54.4
Nitab4.5_0024241g0010 Nicotiana tabacum HOM05D000021 ORTHO05D000010 3.8e-06 56.2 145 27.6
Os11g0569800 Oryza sativa ssp. japonica HOM05D000021 ORTHO05D000010 3.8e-06 56.2 55 40.0
CSS0027847 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 5.0e-06 55.8 124 63.7
CDE04G3280 Ceratophyllum demersum HOM05D000021 ORTHO05D000010 5.0e-06 55.8 70 37.1
Duzib114G0576 Durio zibethinus HOM05D000021 ORTHO05D000010 5.0e-06 55.8 59 45.8
FAN25G3462 Fragaria x ananassa HOM05D000021 ORTHO05D000010 5.0e-06 55.8 146 39.0
Glyma.01G154750 Glycine max HOM05D000021 ORTHO05D000010 5.0e-06 55.8 123 55.3
Nitab4.5_0004612g0080 Nicotiana tabacum HOM05D000021 ORTHO05D000010 5.0e-06 55.8 48 54.2
Carub.0219s0002 Capsella rubella HOM05D000021 ORTHO05D000010 6.6e-06 55.5 97 67.0
Gorai.011G284300 Gossypium raimondii HOM05D000021 ORTHO05D000010 6.6e-06 55.5 151 53.0
Lj3P287T4 Lonicera japonica HOM05D035487 ORTHO05D016322 6.6e-06 55.5 117 53.0
MD01G1096100 Malus domestica HOM05D000021 ORTHO05D000010 6.6e-06 55.5 156 54.5
MD12G1130700 Malus domestica HOM05D000021 ORTHO05D000010 6.6e-06 55.5 138 27.5
Medtr6g036780 Medicago truncatula HOM05D000021 ORTHO05D000010 6.6e-06 55.5 70 37.1
Nitab4.5_0000010g0270 Nicotiana tabacum HOM05D000021 ORTHO05D000010 6.6e-06 55.5 103 71.8
Phvul.008G097500 Phaseolus vulgaris HOM05D000021 ORTHO05D000010 6.6e-06 55.5 40 55.0
Prupe.1G072900 Prunus persica HOM05D000021 ORTHO05D000010 6.6e-06 55.5 134 34.3
QL04p020112 Quercus lobata HOM05D000021 ORTHO05D000010 6.6e-06 55.5 119 31.1
PGSC0003DMG400030443 Solanum tuberosum HOM05D000021 ORTHO05D000010 6.6e-06 55.5 116 66.4
BcaB08g36503 Brassica carinata HOM05D000021 ORTHO05D000010 8.6e-06 55.1 97 64.9
Ca_25056_v3 Cicer arietinum L. HOM05D000021 ORTHO05D000010 8.6e-06 55.1 104 31.7
Ciclev10013537m.g Citrus clementina HOM05D000021 ORTHO05D000010 8.6e-06 55.1 62 41.9
Gorai.011G258200 Gossypium raimondii HOM05D000021 ORTHO05D000010 8.6e-06 55.1 144 37.5
MD11G1104000 Malus domestica HOM05D000021 ORTHO05D000010 8.6e-06 55.1 51 51.0
MD12G1170400 Malus domestica HOM05D000021 ORTHO05D000010 8.6e-06 55.1 57 42.1
Medtr2g040910 Medicago truncatula HOM05D000021 ORTHO05D000010 8.6e-06 55.1 59 45.8
Prupe.2G116100 Prunus persica HOM05D000021 ORTHO05D000010 8.6e-06 55.1 53 52.8
QL05p084418 Quercus lobata HOM05D000021 ORTHO05D000010 8.6e-06 55.1 48 47.9
QL05p084691 Quercus lobata HOM05D000021 ORTHO05D000010 8.6e-06 55.1 48 47.9
QL05p084760 Quercus lobata HOM05D000021 ORTHO05D000010 8.6e-06 55.1 48 47.9
Solyc03g019980.2 Solanum lycopersicum HOM05D000021 ORTHO05D000010 8.6e-06 55.1 51 51.0
Solyc03g098400.2 Solanum lycopersicum HOM05D000021 ORTHO05D000010 8.6e-06 55.1 119 31.1


User provided reference genes

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