Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 0.0e+00 1164.4 570 100.0
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 0.0e+00 1084.7 565 94.3
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 3.7e-260 901.4 460 96.7
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 1.8e-211 739.6 557 65.9
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.6e-205 719.2 558 65.1
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 1.3e-204 716.8 569 65.4
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 2.2e-204 716.1 558 64.7
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.1e-200 703.7 558 64.3
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 3.6e-199 698.7 569 63.8
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 4.6e-194 681.8 492 71.1
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.4e-174 617.1 559 57.4
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 2.0e-173 613.2 559 56.9
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 5.8e-173 611.7 552 56.0
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 1.4e-171 607.1 558 56.6
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.2e-170 604.0 555 56.6
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 3.9e-169 599.0 560 54.8
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 1.2e-167 594.0 552 55.4
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 1.2e-165 587.4 562 53.9
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 4.4e-165 585.5 566 54.1
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 7.6e-165 584.7 557 54.8
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 9.9e-165 584.3 566 54.1
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 1.3e-164 583.9 551 54.4
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 2.4e-163 579.7 559 54.6
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 3.2e-163 579.3 562 55.0
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 7.1e-163 578.2 562 53.7
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 1.2e-162 577.4 553 55.3
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 4.6e-162 575.5 568 52.6
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 4.6e-162 575.5 566 53.4
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 6.0e-162 575.1 559 52.6
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 1.0e-161 574.3 582 52.2
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.0e-161 574.3 564 52.8
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 3.0e-161 572.8 516 57.9
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 1.1e-160 570.9 557 53.7
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 1.5e-160 570.5 571 52.5
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 3.3e-160 569.3 532 55.1
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 3.6e-159 565.8 565 52.6
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 6.2e-159 565.1 550 52.9
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 6.2e-159 565.1 569 53.1
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 2.4e-158 563.1 564 52.1
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 3.1e-158 562.8 605 50.2
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 6.9e-158 561.6 559 53.3
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 1.5e-157 560.5 566 52.8
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 5.8e-157 558.5 555 52.6
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.7e-156 557.0 559 51.5
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 2.9e-156 556.2 559 53.5
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 3.8e-156 555.8 639 48.2
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 5.4e-155 552.0 555 52.1
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 7.1e-155 551.6 555 51.5
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 9.3e-155 551.2 564 51.4
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.2e-154 550.8 564 51.8
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 1.2e-154 550.8 562 53.2
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.6e-154 550.4 553 52.8
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.1e-154 550.1 553 52.6
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.1e-154 550.1 564 51.6
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 2.3e-153 546.6 545 52.7
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 3.9e-153 545.8 524 54.4
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 8.7e-153 544.7 558 50.9
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.1e-152 544.3 558 50.9
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.1e-151 540.0 558 50.5
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 3.6e-151 539.3 487 57.3
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 4.8e-151 538.9 562 52.0
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 6.2e-151 538.5 528 53.2
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 8.1e-151 538.1 531 54.0
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 1.8e-150 537.0 556 50.7
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 9.0e-150 534.6 567 49.9
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.5e-149 533.9 565 51.0
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.4e-149 532.7 563 49.7
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 7.6e-149 531.6 568 49.6
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 9.9e-149 531.2 571 49.6
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 1.3e-148 530.8 536 51.9
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 3.8e-148 529.3 556 49.8
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 4.9e-148 528.9 567 49.7
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 5.5e-147 525.4 567 49.9
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 7.1e-147 525.0 563 50.3
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 1.8e-145 520.4 551 49.9
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.9e-144 516.9 567 48.7
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 5.6e-144 515.4 567 49.2
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 1.4e-142 510.8 565 50.6
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 2.4e-142 510.0 566 47.7
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 2.6e-141 506.5 568 47.9
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 5.8e-141 505.4 558 48.4
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 5.8e-141 505.4 580 47.6
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 2.2e-140 503.4 574 47.6
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 3.8e-140 502.7 565 48.3
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 3.8e-140 502.7 562 47.3
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 8.4e-140 501.5 566 48.4
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.9e-139 500.4 559 47.6
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 3.2e-139 499.6 567 46.7
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 7.1e-139 498.4 572 47.9
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 2.1e-138 496.9 508 52.6
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 1.0e-137 494.6 567 46.6
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 1.3e-137 494.2 556 47.5
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 6.7e-137 491.9 560 46.1
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.9e-136 490.3 367 62.7
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.5e-136 490.0 367 62.7
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 3.3e-136 489.6 563 46.4
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 5.7e-136 488.8 563 46.5
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 9.6e-136 488.0 560 45.7
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 1.3e-135 487.6 556 47.1
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.3e-135 487.6 367 62.7
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.4e-134 484.2 563 46.0
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 3.1e-134 483.0 636 45.4
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 5.9e-133 478.8 368 61.1
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 1.3e-132 477.6 360 62.5
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 2.2e-132 476.9 529 48.0
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 3.8e-132 476.1 560 46.6
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.6e-130 470.7 365 60.5
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 7.9e-130 468.4 361 60.4
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 4.8e-127 459.1 560 46.8
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 7.7e-125 451.8 560 43.2
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.9e-123 447.2 556 44.6
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 3.2e-123 446.4 388 55.4
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 5.5e-123 445.7 563 45.8
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 9.4e-123 444.9 551 44.8
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 4.6e-122 442.6 351 59.5
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 1.8e-121 440.7 299 67.6
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 2.6e-120 436.8 577 45.2
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 5.3e-118 429.1 569 45.0
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 6.9e-118 428.7 315 62.5
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 2.5e-115 420.2 568 40.3
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 9.4e-115 418.3 568 40.1
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 3.9e-113 412.9 575 40.3
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 1.5e-112 411.0 440 46.6
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 4.4e-112 409.5 337 58.2
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 5.7e-112 409.1 563 40.0
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 5.7e-112 409.1 441 46.7
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 5.7e-112 409.1 441 46.7
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 9.1e-110 401.7 454 46.9
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 4.5e-109 399.4 375 49.1
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.0e-108 398.3 582 37.8
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 3.8e-108 396.4 375 48.5
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 5.0e-108 396.0 375 49.6
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 7.2e-107 392.1 348 53.4
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 1.2e-106 391.3 582 38.0
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 1.2e-106 391.3 582 38.0
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 2.1e-106 390.6 343 57.7
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.8e-105 387.5 370 49.2
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 6.3e-103 379.0 268 64.9
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.4e-102 377.9 451 45.5
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 4.1e-102 376.3 583 36.9
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 4.1e-102 376.3 583 36.9
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 1.7e-100 370.9 408 48.0
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 1.1e-99 368.2 530 40.8
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.2e-98 364.8 279 58.1
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 8.8e-97 358.6 299 52.8
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 7.0e-94 349.0 531 38.8
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.9e-92 343.6 227 67.8
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 1.2e-88 331.6 309 53.4
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 8.9e-81 305.4 336 50.0
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.6e-80 303.9 210 67.1
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.1e-78 298.5 210 66.7
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 3.3e-75 287.0 299 45.8
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 2.2e-63 247.7 329 45.0
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 4.6e-61 240.0 565 31.7
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 5.2e-57 226.5 321 42.1
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 3.4e-56 223.8 109 98.2
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.1e-51 208.8 130 72.3
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 9.6e-51 205.7 581 29.8
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 1.2e-45 188.7 281 42.3
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 1.6e-45 188.3 162 53.1
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.1e-42 177.9 324 36.4
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 8.1e-42 176.0 125 65.6
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 1.4e-41 175.3 257 35.0
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 8.4e-39 166.0 138 58.7
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 2.1e-29 134.8 83 73.5
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 2.1e-26 124.8 83 68.7
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 1.5e-24 118.6 65 83.1
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 2.0e-24 118.2 101 53.5
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 3.8e-23 114.0 69 73.9
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 5.5e-22 110.2 94 55.3
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 4.5e-16 90.5 259 28.6
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.6e-13 82.0 270 30.7
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.8e-10 71.2 132 37.1


User provided reference genes

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