Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 0.0e+00 1280.0 652 100.0
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 0.0e+00 1262.7 652 98.6
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 2.6e-310 1068.1 653 82.1
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 3.3e-297 1024.6 652 80.4
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 4.3e-297 1024.2 644 81.5
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 2.9e-285 984.9 679 76.6
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 1.5e-225 786.6 656 61.9
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 5.7e-217 758.1 663 60.0
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 2.7e-206 722.6 639 57.6
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 4.5e-206 721.8 670 55.8
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 1.9e-204 716.5 670 55.5
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 1.4e-202 710.3 660 56.5
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 1.3e-200 703.7 654 55.5
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 3.9e-197 692.2 658 55.5
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 5.0e-197 691.8 678 54.6
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 3.3e-196 689.1 663 55.1
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 5.6e-196 688.3 657 54.3
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 1.4e-194 683.7 660 53.9
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 3.1e-194 682.6 659 55.1
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 8.9e-194 681.0 668 53.9
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 4.1e-191 672.2 370 94.9
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 9.5e-188 661.0 663 52.5
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 1.4e-186 657.1 661 53.6
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 5.8e-185 651.7 662 52.3
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 1.9e-180 636.7 661 51.9
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 2.1e-179 633.3 647 51.8
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 8.1e-179 631.3 589 54.8
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 5.8e-177 625.2 642 51.6
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 9.9e-177 624.4 663 49.8
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 3.7e-176 622.5 660 49.7
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 1.4e-175 620.5 662 50.2
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 1.9e-175 620.2 662 51.1
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 7.1e-175 618.2 668 49.3
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 1.2e-174 617.5 708 50.4
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 2.7e-174 616.3 493 62.5
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 7.8e-174 614.8 695 49.2
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 2.5e-172 609.8 660 50.8
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 3.3e-172 609.4 662 50.2
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 9.6e-172 607.8 657 48.7
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.1e-170 604.4 644 49.5
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 1.8e-170 603.6 672 48.8
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 1.8e-170 603.6 660 51.1
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 3.1e-170 602.8 661 50.2
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 3.1e-170 602.8 673 48.4
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 6.8e-170 601.7 672 48.7
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 8.9e-170 601.3 661 50.1
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 1.3e-168 597.4 662 48.3
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 1.7e-168 597.0 668 48.5
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 3.8e-168 595.9 660 50.5
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 2.4e-167 593.2 647 48.5
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 3.2e-167 592.8 673 48.1
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 5.4e-167 592.0 665 47.8
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 2.7e-166 589.7 668 50.0
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 4.6e-166 589.0 469 63.1
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 6.0e-166 588.6 752 45.1
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 2.5e-164 583.2 783 43.9
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 1.6e-163 580.5 657 49.0
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 2.8e-163 579.7 671 47.4
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 7.6e-161 571.6 512 56.2
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 9.9e-161 571.2 595 52.3
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 1.3e-160 570.9 596 51.3
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 1.7e-160 570.5 666 47.6
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 6.6e-157 558.5 613 48.9
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 5.3e-154 548.9 595 49.7
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 2.6e-153 546.6 663 46.9
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 4.5e-153 545.8 656 46.8
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 4.5e-153 545.8 580 50.3
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 1.3e-149 534.3 661 46.1
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 2.5e-148 530.0 492 55.5
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 4.8e-147 525.8 668 44.6
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 4.2e-143 512.7 657 44.1
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 2.3e-141 506.9 466 57.3
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 1.3e-139 501.1 426 58.2
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 9.0e-138 495.0 529 50.1
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 5.9e-137 492.3 680 42.6
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 9.7e-132 474.9 687 43.5
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 2.6e-129 466.8 561 47.2
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 1.2e-126 458.0 704 40.1
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 3.9e-125 453.0 592 43.9
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 8.8e-125 451.8 707 40.0
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 1.7e-123 447.6 717 40.3
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 2.2e-123 447.2 722 39.2
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 1.2e-121 441.4 661 40.5
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 2.1e-118 430.6 491 45.6
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 1.3e-115 421.4 690 39.6
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 1.2e-113 414.8 803 36.0
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 1.1e-103 381.7 653 39.5
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 9.1e-98 362.1 705 36.3
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 5.5e-95 352.8 264 65.5
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 8.8e-93 345.5 500 38.8
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 1.5e-92 344.7 500 38.8
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 1.6e-89 334.7 562 39.9
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 5.0e-80 303.1 577 33.6
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 7.8e-73 279.3 264 54.2
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 1.2e-70 271.9 264 53.4
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 4.4e-68 263.5 498 33.5
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 7.6e-52 209.5 371 37.7
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 5.1e-40 170.2 436 31.7
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 5.6e-39 166.8 381 31.2
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 9.6e-39 166.0 197 44.2
MSTRG.9383 Avicennia marina HOM05D007228 ORTHO05D009099 3.7e-38 164.1 198 49.0
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 9.0e-37 159.5 267 35.6
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 9.0e-37 159.5 203 45.3
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 2.5e-31 141.4 483 29.0
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 9.0e-29 132.9 165 41.2
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 2.0e-28 131.7 178 39.3
HanXRQChr08g0229021 Helianthus annuus HOM05D007228 ORTHO05D009099 1.9e-26 125.2 128 55.5
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 6.9e-21 106.7 114 46.5
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 7.2e-18 96.7 508 22.8
HPP92_021580 Vanilla planifolia HOM05D007228 ORTHO05D009099 7.2e-18 96.7 161 36.6
Lalb_Chr12g0202661 Lupinus albus HOM05D007228 ORTHO05D009099 1.2e-17 95.9 142 47.2
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 6.3e-14 83.6 83 44.6
Sp6g35490 Schrenkiella parvula HOM05D007228 ORTHO05D009099 4.1e-13 80.9 126 43.7
Peaxi162Scf00677g00035 Petunia axillaris HOM05D000800 ORTHO05D000658 2.6e-12 78.2 198 34.8
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 4.2e-10 70.9 95 38.9


User provided reference genes

Program Settings