Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g036570 Solanum pennellii HOM05D008438 ORTHO05D008827 0.0e+00 1412.5 711 100.0
Solyc03g117660.4 Solanum lycopersicum HOM05D008438 ORTHO05D008827 0.0e+00 1357.8 711 96.8
PGSC0003DMG400014154 Solanum tuberosum HOM05D008438 ORTHO05D008827 0.0e+00 1239.6 717 89.1
CAN.G1008.6 Capsicum annuum HOM05D008438 ORTHO05D008827 2.8e-233 812.4 761 60.7
Nitab4.5_0002700g0070 Nicotiana tabacum HOM05D008438 ORTHO05D008827 7.9e-220 767.7 745 58.1
Nitab4.5_0004738g0100 Nicotiana tabacum HOM05D008438 ORTHO05D008827 1.5e-218 763.5 756 57.1
Peaxi162Scf00314g01044 Petunia axillaris HOM05D008438 ORTHO05D008827 3.8e-190 669.1 738 52.6
Cc04_g05290 Coffea canephora HOM05D008438 ORTHO05D008827 2.7e-42 177.9 620 29.2
MSTRG.22807 Avicennia marina HOM05D008438 ORTHO05D008827 3.6e-39 167.5 729 28.5
Migut.I00674 Erythranthe guttata HOM05D008438 ORTHO05D008827 2.4e-35 154.8 606 28.7
Oeu004554.3 Olea europaea HOM05D008438 ORTHO05D008827 2.0e-29 135.2 358 31.8
Hma1.2p1_1914F.1_g307390 Hydrangea macrophylla HOM05D008438 ORTHO05D008827 1.7e-28 132.1 198 40.9
Actinidia08936 Actinidia chinensis HOM05D017379 ORTHO05D008827 2.0e-26 125.2 714 25.2
SalBow7G4248 Salvia bowleyana HOM05D008438 ORTHO05D008827 2.0e-26 125.2 582 26.8
Rhsim12G0185500 Rhododendron simsii HOM05D017379 ORTHO05D008827 1.2e-23 115.9 823 23.6
SGA_v2.0_scaffold5G02798 Striga asiatica HOM05D008438 ORTHO05D008827 2.1e-23 115.2 532 26.9
HanXRQChr04g0100031 Helianthus annuus HOM05D008438 ORTHO05D008827 1.2e-21 109.4 749 23.4
Haze_16688 Corylus avellana HOM05D008438 ORTHO05D008827 2.6e-21 108.2 716 24.7
FAN09G3978 Fragaria x ananassa HOM05D015689 ORTHO05D008827 3.7e-20 104.4 111 47.7
FvH4_6g28290 Fragaria vesca HOM05D015689 ORTHO05D008827 2.4e-19 101.7 123 43.1
FAN14G1731 Fragaria x ananassa HOM05D015689 ORTHO05D008827 2.4e-19 101.7 123 43.1
FAN02G3655 Fragaria x ananassa HOM05D015689 ORTHO05D008827 3.2e-19 101.3 124 42.7
RcHm_v2.0_Chr2g0132351 Rosa chinensis HOM05D015689 ORTHO05D008827 3.2e-19 101.3 71 57.7
MD17G1226300 Malus domestica HOM05D015689 ORTHO05D008827 4.1e-19 100.9 62 67.7
Prupe.3G103500 Prunus persica HOM05D015689 ORTHO05D008827 5.4e-19 100.5 78 55.1
Duzib235G0641 Durio zibethinus HOM05D032892 ORTHO05D008827 7.1e-19 100.1 233 33.5
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 9.2e-19 99.8 794 23.6
Aqoxy7G03345 Aquilegia oxysepala HOM05D008438 ORTHO05D008827 2.1e-18 98.6 64 62.5
AUR62032995 Chenopodium quinoa HOM05D032589 ORTHO05D008827 2.1e-18 98.6 62 62.9
GSVIVG01016106001 Vitis vinifera HOM05D008438 ORTHO05D008827 3.5e-18 97.8 690 24.6
ECA247G0974 Erigeron canadensis HOM05D008438 ORTHO05D008827 6.0e-18 97.1 409 26.7
ClCG09G003500 Citrullus lanatus HOM05D008438 ORTHO05D008827 7.8e-18 96.7 73 53.4
unitig_52.g17481 Utricularia gibba HOM05D008438 ORTHO05D008827 7.8e-18 96.7 91 46.2
EL10Ac8g19397 Beta vulgaris HOM05D032589 ORTHO05D008827 2.3e-17 95.1 61 63.9
Actinidia18261 Actinidia chinensis HOM05D017379 ORTHO05D008827 3.0e-17 94.7 685 23.8
MELO3C023487.2 Cucumis melo HOM05D008438 ORTHO05D008827 3.0e-17 94.7 73 52.1
CsaV3_7G031700 Cucumis sativus L. HOM05D008438 ORTHO05D008827 3.0e-17 94.7 73 52.1
Glyma.15G002400 Glycine max HOM05D022716 ORTHO05D008827 3.0e-17 94.7 112 42.0
COL.COLO4_26771 Corchorus olitorius HOM05D032892 ORTHO05D008827 3.9e-17 94.4 377 28.9
Glyma.13G371300 Glycine max HOM05D022716 ORTHO05D008827 3.9e-17 94.4 89 46.1
TAR625G0030 Trochodendron aralioides HOM05D008438 ORTHO05D008827 3.9e-17 94.4 67 53.7
PSO782G4356 Papaver somniferum HOM05D008438 ORTHO05D008827 5.1e-17 94.0 86 46.5
PSO063G1826 Papaver somniferum HOM05D008438 ORTHO05D008827 8.6e-17 93.2 76 50.0
Hund12562 Selenicereus undatus HOM05D008438 ORTHO05D008827 8.6e-17 93.2 199 33.7
HanXRQChr02g0033611 Helianthus annuus HOM05D008438 ORTHO05D008827 1.9e-16 92.0 383 24.8
TWI18G0426 Tripterygium wilfordii HOM05D008438 ORTHO05D008827 2.5e-16 91.7 88 45.5
Sed0012806 Sechium edule HOM05D008438 ORTHO05D008827 5.6e-16 90.5 73 49.3
Dinv23269 Davidia involucrata HOM05D017379 ORTHO05D008827 7.3e-16 90.1 527 24.7
Sc10g0008430 Simmondsia chinensis HOM05D008438 ORTHO05D008827 9.5e-16 89.7 285 29.5
Manes.04G100800 Manihot esculenta HOM05D008438 ORTHO05D008827 1.6e-15 89.0 191 36.1
VMungo1080G1089 Vigna mungo HOM05D022716 ORTHO05D008827 2.1e-15 88.6 116 37.9
SGA_v2.0_scaffold37G14678 Striga asiatica HOM05D008438 ORTHO05D008827 2.8e-15 88.2 527 26.0
Potri.001G042000 Populus trichocarpa HOM05D008438 ORTHO05D008827 4.7e-15 87.4 118 39.8
Manes.11G069100 Manihot esculenta HOM05D008438 ORTHO05D008827 6.2e-15 87.0 140 42.1
Phvul.005G183500 Phaseolus vulgaris HOM05D022716 ORTHO05D008827 1.1e-14 86.3 116 37.1
Sabra01G0028800 Salix brachista HOM05D008438 ORTHO05D008827 1.1e-14 86.3 128 40.6
Eucgr.F03984 Eucalyptus grandis HOM05D008438 ORTHO05D008827 1.4e-14 85.9 123 39.0
Lj3g0015243 Lotus japonicus HOM05D022716 ORTHO05D008827 2.3e-14 85.1 115 37.4
Ciclev10026162m.g Citrus clementina HOM05D008438 ORTHO05D008827 5.2e-14 84.0 212 31.6
Dinv21425 Davidia involucrata HOM05D017379 ORTHO05D008827 6.8e-14 83.6 448 26.3
Lsat_1_v5_gn_4_132640 Lactuca sativa HOM05D008438 ORTHO05D008827 1.2e-13 82.8 50 66.0
CANSAT56G0832 Cannabis sativa HOM05D008438 ORTHO05D008827 2.6e-13 81.6 90 43.3
Oeu023269.1 Olea europaea HOM05D008438 ORTHO05D008827 2.2e-12 78.6 432 25.0
Nn8g40077 Nelumbo nucifera HOM05D008438 ORTHO05D008827 5.1e-09 67.4 136 35.3
Cfa020785 Carpinus fangiana HOM05D019529 ORTHO05D008827 8.6e-09 66.6 58 41.4
QL02p094184 Quercus lobata HOM05D019529 ORTHO05D008827 3.3e-08 64.7 66 42.4
Actinidia38661 Actinidia chinensis HOM05D008438 ORTHO05D008827 9.6e-08 63.2 74 37.8
Peaxi162Scf00563g00416 Petunia axillaris HOM05D022295 ORTHO05D008827 2.8e-07 61.6 62 38.7
COL.COLO4_05403 Corchorus olitorius HOM05D019525 ORTHO05D008827 4.7e-07 60.8 70 40.0
Nitab4.5_0006744g0030 Nicotiana tabacum HOM05D022295 ORTHO05D008827 8.1e-07 60.1 63 38.1
QL02p094192 Quercus lobata HOM05D019529 ORTHO05D008827 8.1e-07 60.1 62 38.7
Dinv42819 Davidia involucrata HOM05D019090 ORTHO05D008827 1.4e-06 59.3 72 37.5
Dinv43281 Davidia involucrata HOM05D019090 ORTHO05D008827 1.4e-06 59.3 72 37.5
Sabra06G0137500 Salix brachista HOM05D037217 ORTHO05D008827 1.4e-06 59.3 85 35.3
Solyc07g005980.2 Solanum lycopersicum HOM05D022295 ORTHO05D008827 3.1e-06 58.2 64 37.5
arahy.Tifrunner.gnm1.ann1.A2Z21V Arachis hypogaea HOM05D001860 ORTHO05D004239 4.0e-06 57.8 62 43.5
arahy.Tifrunner.gnm1.ann1.RS14VD Arachis hypogaea HOM05D001860 ORTHO05D004239 4.0e-06 57.8 62 43.5
BcaB08g34374 Brassica carinata HOM05D001860 ORTHO05D004239 6.9e-06 57.0 57 43.9
Lj2g0002980 Lotus japonicus HOM05D001860 ORTHO05D004239 6.9e-06 57.0 62 40.3
Os10g0406200 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004239 9.0e-06 56.6 92 35.9
HPP92_001713 Vanilla planifolia HOM05D001860 ORTHO05D004239 9.0e-06 56.6 64 37.5


User provided reference genes

Program Settings