Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 2.8e-137 491.9 238 100.0
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 6.7e-123 444.1 234 91.9
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 5.0e-110 401.4 215 91.6
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 6.5e-110 401.0 232 81.9
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 4.2e-109 398.3 238 80.3
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 2.3e-107 392.5 233 81.1
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 3.7e-81 305.4 233 64.4
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 1.8e-80 303.1 168 87.5
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 9.1e-80 300.8 212 67.5
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 2.7e-79 299.3 213 65.3
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 5.9e-79 298.1 209 66.0
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 2.2e-78 296.2 244 60.7
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 2.2e-78 296.2 237 59.5
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 1.9e-77 293.1 228 60.5
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 2.5e-77 292.7 226 61.1
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 4.2e-77 292.0 215 62.3
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 5.5e-77 291.6 212 60.8
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 5.5e-77 291.6 226 61.5
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 9.4e-77 290.8 222 63.1
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 9.4e-77 290.8 213 61.5
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 1.6e-76 290.0 218 60.6
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 2.1e-76 289.7 212 63.2
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 2.1e-76 289.7 226 60.2
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 2.7e-76 289.3 217 62.7
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 3.6e-76 288.9 232 60.3
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 1.8e-75 286.6 228 61.0
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 4.0e-75 285.4 237 58.2
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 4.0e-75 285.4 227 59.9
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 4.0e-75 285.4 213 60.1
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 6.8e-75 284.6 238 56.7
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.5e-74 283.5 215 61.4
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 2.6e-74 282.7 208 62.5
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 5.7e-74 281.6 216 60.6
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 5.7e-74 281.6 228 61.0
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 9.8e-74 280.8 218 60.1
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 9.8e-74 280.8 226 58.4
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 1.3e-73 280.4 213 58.7
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 6.3e-73 278.1 225 59.1
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 1.4e-72 276.9 212 59.9
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 2.4e-72 276.2 207 60.9
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 3.1e-72 275.8 227 56.8
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 3.1e-72 275.8 232 56.9
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 4.1e-72 275.4 227 58.1
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 4.1e-72 275.4 213 60.1
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 2.7e-71 272.7 228 56.1
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 7.7e-71 271.2 210 58.1
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 1.0e-70 270.8 190 64.7
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 1.0e-70 270.8 219 58.9
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 1.3e-70 270.4 254 52.8
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 3.8e-70 268.9 238 55.5
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 5.0e-70 268.5 212 59.4
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 5.0e-70 268.5 218 57.8
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 5.0e-70 268.5 239 54.8
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 6.6e-70 268.1 225 56.4
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.1e-69 267.3 215 59.1
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.5e-69 266.9 240 55.4
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 3.3e-69 265.8 220 57.7
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 7.2e-69 264.6 238 59.2
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 9.5e-69 264.2 213 57.3
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 9.5e-69 264.2 198 60.1
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 9.5e-69 264.2 227 58.1
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 2.1e-68 263.1 222 58.1
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 2.8e-68 262.7 213 56.8
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 1.0e-67 260.8 205 62.0
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.4e-67 260.4 214 57.0
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 4.0e-67 258.8 222 57.2
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 2.0e-66 256.5 223 52.9
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 9.8e-66 254.2 228 52.6
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.3e-65 253.8 210 55.2
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 2.2e-65 253.1 227 50.7
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 2.8e-65 252.7 231 53.2
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 3.7e-65 252.3 231 53.2
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 4.9e-65 251.9 228 51.8
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 6.3e-65 251.5 226 50.4
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 1.1e-64 250.8 231 53.2
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 1.4e-64 250.4 211 51.2
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 2.4e-64 249.6 231 51.5
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 2.4e-64 249.6 231 51.5
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 4.1e-64 248.8 232 51.3
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 5.4e-64 248.4 233 50.6
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 5.4e-64 248.4 229 51.5
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 5.4e-64 248.4 211 56.9
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 5.4e-64 248.4 251 52.2
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 7.0e-64 248.1 196 58.7
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 7.0e-64 248.1 164 65.2
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 1.2e-63 247.3 226 50.4
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 2.0e-63 246.5 230 51.3
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 4.5e-63 245.4 210 55.2
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 4.5e-63 245.4 234 50.0
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 7.8e-63 244.6 203 55.7
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 1.0e-62 244.2 213 55.4
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 1.3e-62 243.8 205 52.7
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 1.3e-62 243.8 231 50.6
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 2.3e-62 243.0 226 50.0
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 2.3e-62 243.0 190 58.4
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 2.9e-62 242.7 192 66.1
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 5.0e-62 241.9 204 52.5
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 6.6e-62 241.5 229 50.2
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 6.6e-62 241.5 205 52.7
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 9.5e-61 237.7 186 62.9
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 1.2e-60 237.3 210 51.9
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 1.2e-60 237.3 210 51.9
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 2.1e-60 236.5 210 51.4
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 2.1e-60 236.5 191 59.7
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 3.6e-60 235.7 223 56.1
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 3.6e-60 235.7 198 58.6
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 4.7e-60 235.3 195 55.9
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 4.7e-60 235.3 196 58.2
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.5e-58 230.3 248 50.8
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 9.8e-58 227.6 254 46.1
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 4.9e-57 225.3 208 49.5
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 2.4e-56 223.0 218 50.0
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 2.0e-55 219.9 185 50.3
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 4.6e-55 218.8 204 51.0
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 2.3e-54 216.5 189 52.4
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 6.6e-54 214.9 241 44.4
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 3.3e-53 212.6 204 54.4
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 2.1e-52 209.9 241 45.2
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 3.7e-49 199.1 202 51.0
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 4.6e-47 192.2 269 45.0
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 6.6e-46 188.3 153 57.5
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 4.3e-45 185.7 210 46.2
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 4.7e-44 182.2 207 46.4
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 6.2e-44 181.8 188 44.7
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 5.8e-42 175.3 196 43.4
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 3.7e-41 172.6 151 58.3
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 4.9e-41 172.2 140 53.6
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 7.1e-40 168.3 260 37.3
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 2.1e-39 166.8 202 43.1
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 6.0e-39 165.2 108 65.7
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 1.7e-25 120.6 159 42.8
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.6e-23 114.0 74 63.5
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 2.7e-23 113.2 79 63.3
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 3.5e-23 112.8 61 82.0
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 1.7e-22 110.5 61 75.4
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 2.5e-21 106.7 89 48.3
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 2.5e-21 106.7 105 53.3
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.6e-20 104.0 107 46.7
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 2.9e-17 93.2 96 52.1
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 1.1e-16 91.3 53 66.0
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 3.2e-16 89.7 96 50.0
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 5.4e-16 89.0 99 48.5
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 7.1e-16 88.6 116 43.1
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 3.9e-14 82.8 64 50.0
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 2.1e-12 77.0 49 67.3
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.8e-11 73.9 52 65.4
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 4.0e-11 72.8 36 80.6
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 9.0e-11 71.6 81 48.1
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 5.8e-10 68.9 107 40.2
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 7.6e-10 68.6 51 62.7
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 2.9e-09 66.6 207 27.5
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 1.1e-08 64.7 122 34.4
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 6.0e-07 58.9 38 68.4


User provided reference genes

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