Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 4.0e-57 224.6 115 100.0
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 1.3e-52 209.5 115 92.2
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 3.6e-50 201.4 115 88.7
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 2.0e-48 195.7 112 86.6
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 3.5e-37 158.3 115 69.6
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 1.3e-36 156.4 115 70.4
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 5.6e-35 151.0 116 68.1
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 6.2e-34 147.5 117 65.8
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 8.1e-34 147.1 117 66.7
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 1.4e-33 146.4 117 63.2
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 3.1e-33 145.2 117 62.4
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 6.9e-33 144.1 115 61.7
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 2.6e-32 142.1 115 62.6
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 3.4e-32 141.7 115 64.3
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 1.4e-30 136.3 115 58.3
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 9.3e-30 133.7 117 61.5
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 2.1e-29 132.5 115 59.1
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 4.6e-29 131.3 115 58.3
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 4.6e-29 131.3 100 65.0
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 6.0e-29 131.0 116 60.3
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 1.8e-28 129.4 99 67.7
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 1.8e-28 129.4 115 58.3
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 6.7e-28 127.5 94 64.9
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 1.9e-27 125.9 107 57.9
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 2.5e-27 125.6 110 56.4
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 2.5e-27 125.6 118 59.3
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 4.3e-27 124.8 105 60.0
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 4.3e-27 124.8 112 58.0
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 4.3e-27 124.8 97 60.8
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 5.7e-27 124.4 121 57.9
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 7.4e-27 124.0 101 64.4
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 7.4e-27 124.0 115 55.7
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 9.6e-27 123.6 115 55.7
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 1.6e-26 122.9 99 60.6
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 1.6e-26 122.9 104 57.7
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 1.6e-26 122.9 107 61.7
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 2.1e-26 122.5 115 54.8
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 2.1e-26 122.5 110 56.4
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 2.1e-26 122.5 88 63.6
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 2.8e-26 122.1 101 58.4
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 2.8e-26 122.1 115 54.8
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 3.7e-26 121.7 98 61.2
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 4.8e-26 121.3 101 58.4
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 6.3e-26 120.9 100 59.0
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 6.3e-26 120.9 100 59.0
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 8.2e-26 120.6 116 50.9
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 8.2e-26 120.6 98 65.3
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 8.2e-26 120.6 115 53.9
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 1.8e-25 119.4 106 58.5
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 1.8e-25 119.4 93 62.4
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 3.1e-25 118.6 105 57.1
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 3.1e-25 118.6 111 55.9
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 3.1e-25 118.6 91 63.7
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 4.1e-25 118.2 115 53.9
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 5.3e-25 117.9 110 54.5
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 5.3e-25 117.9 91 65.9
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 9.0e-25 117.1 91 61.5
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 1.2e-24 116.7 95 55.8
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 1.2e-24 116.7 103 58.3
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 1.5e-24 116.3 99 58.6
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 1.5e-24 116.3 101 55.4
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 3.4e-24 115.2 91 59.3
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 5.9e-24 114.4 101 53.5
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 7.6e-24 114.0 114 52.6
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 1.3e-23 113.2 97 57.7
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 3.8e-23 111.7 89 58.4
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 5.0e-23 111.3 97 54.6
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 5.0e-23 111.3 102 57.8
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 1.9e-22 109.4 94 53.2
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 7.2e-22 107.5 94 59.6
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 2.7e-21 105.5 93 52.7
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 4.6e-21 104.8 94 55.3
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 6.1e-21 104.4 90 60.0
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 8.7e-20 100.5 114 47.4
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 8.7e-20 100.5 91 53.8
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 1.9e-19 99.4 90 52.2
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 5.7e-19 97.8 92 50.0
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 1.6e-18 96.3 86 58.1
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 2.2e-18 95.9 109 51.4
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 2.2e-18 95.9 92 55.4
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 2.2e-18 95.9 112 48.2
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 1.1e-17 93.6 94 52.1
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 7.7e-16 87.4 86 55.8
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 1.1e-14 83.6 99 47.5
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 9.4e-14 80.5 82 46.3
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 1.2e-13 80.1 87 47.1
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 3.9e-12 75.1 84 50.0
Hma1.2p1_0586F.1_g183770 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 2.2e-07 59.3 74 47.3
Lsat_1_v5_gn_2_132940 Lactuca sativa HOM05D007920 ORTHO05D009993 8.5e-07 57.4 71 46.5
Hma1.2p1_1595F.1_g292725 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 7.2e-06 54.3 55 56.4


User provided reference genes

Program Settings