Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g035690 Solanum pennellii HOM05D002526 ORTHO05D010157 7.9e-169 597.0 304 100.0
Solyc03g116770.3 Solanum lycopersicum HOM05D002526 ORTHO05D010157 8.1e-166 587.0 304 99.0
PGSC0003DMG400000622 Solanum tuberosum HOM05D002526 ORTHO05D010157 4.3e-159 564.7 304 94.7
CAN.G407.78 Capsicum annuum HOM05D002526 ORTHO05D000105 8.8e-136 487.3 295 86.1
Nitab4.5_0003463g0050 Nicotiana tabacum HOM05D001442 ORTHO05D001369 1.6e-121 439.9 287 79.4
Peaxi162Scf00332g00625 Petunia axillaris HOM05D002526 ORTHO05D010157 4.7e-121 438.3 304 75.7
Nitab4.5_0008560g0050 Nicotiana tabacum HOM05D001442 ORTHO05D010157 1.0e-120 437.2 302 76.5
Dinv30612 Davidia involucrata HOM05D002526 ORTHO05D004039 5.4e-77 292.0 273 59.3
CSS0025449 Camellia sinensis var. sinensis HOM05D002526 ORTHO05D004039 4.6e-76 288.9 260 58.8
vmacro19003 Vaccinium macrocarpon HOM05D002526 ORTHO05D010157 2.5e-74 283.1 272 57.0
Hma1.2p1_0242F.1_g100630 Hydrangea macrophylla HOM05D002526 ORTHO05D010157 9.6e-74 281.2 302 52.6
CiPaw.01G248800 Carya illinoinensis HOM05D002526 ORTHO05D004039 2.8e-73 279.6 264 57.6
Actinidia15756 Actinidia chinensis HOM05D002526 ORTHO05D010157 6.2e-73 278.5 296 53.7
TWI18G0347 Tripterygium wilfordii HOM05D002526 ORTHO05D010157 1.3e-70 270.8 249 55.8
Haze_16568 Corylus avellana HOM05D002526 ORTHO05D004039 2.2e-70 270.0 303 51.2
QL03p020400 Quercus lobata HOM05D002526 ORTHO05D010157 2.9e-70 269.6 312 49.4
QL05p030835 Quercus lobata HOM05D002526 ORTHO05D010157 2.9e-70 269.6 312 49.4
SGA_v2.0_scaffold5G02704 Striga asiatica HOM05D002526 ORTHO05D010157 9.3e-69 264.6 297 50.2
Prupe.3G088600 Prunus persica HOM05D002526 ORTHO05D010157 1.6e-68 263.8 244 55.7
FvH4_6g29541 Fragaria vesca HOM05D002526 ORTHO05D010157 2.7e-68 263.1 248 56.0
FAN14G4319 Fragaria x ananassa HOM05D002526 ORTHO05D010157 2.7e-68 263.1 248 56.0
Nn2g12105 Nelumbo nucifera HOM05D002526 ORTHO05D010157 6.0e-68 261.9 295 52.2
Manes.04G112150 Manihot esculenta HOM05D002526 ORTHO05D004039 1.7e-67 260.4 270 53.0
Potri.001G202300 Populus trichocarpa HOM05D002526 ORTHO05D010157 3.9e-67 259.2 252 54.4
Lj5A73G68 Lonicera japonica HOM05D002526 ORTHO05D010157 6.6e-67 258.5 294 52.4
MD17G1213300 Malus domestica HOM05D002526 ORTHO05D010157 6.6e-67 258.5 283 50.5
RcHm_v2.0_Chr2g0135091 Rosa chinensis HOM05D002526 ORTHO05D010157 6.6e-67 258.5 237 55.7
Duzib192G0551 Durio zibethinus HOM05D002526 ORTHO05D010157 3.3e-66 256.1 230 57.8
Migut.I00757 Erythranthe guttata HOM05D002526 ORTHO05D010157 4.3e-66 255.8 291 50.2
Hund00650 Selenicereus undatus HOM05D002526 ORTHO05D010157 4.3e-66 255.8 233 57.1
Hund00651 Selenicereus undatus HOM05D002526 ORTHO05D010157 1.3e-65 254.2 233 57.1
GSVIVG01017348001 Vitis vinifera HOM05D002526 ORTHO05D004039 3.6e-65 252.7 300 48.0
Gohir.A05G122650 Gossypium hirsutum HOM05D002526 ORTHO05D010157 4.8e-65 252.3 225 57.8
Gorai.009G127500 Gossypium raimondii HOM05D002526 ORTHO05D010157 8.1e-65 251.5 225 57.8
COL.COLO4_11933 Corchorus olitorius HOM05D002526 ORTHO05D004039 3.1e-64 249.6 277 50.2
Thecc.06G028700 Theobroma cacao HOM05D002526 ORTHO05D010157 4.4e-63 245.7 228 55.7
Atru.chr1.2906 Acer truncatum HOM05D002526 ORTHO05D010157 5.8e-63 245.4 262 51.5
Ciclev10024867m.g Citrus clementina HOM05D002526 ORTHO05D004039 3.2e-61 239.6 270 49.6
Cc04_g04450 Coffea canephora HOM05D002526 ORTHO05D010157 5.4e-61 238.8 281 47.7
CANSAT56G1960 Cannabis sativa HOM05D002526 ORTHO05D010157 2.7e-60 236.5 233 53.6
Oeu045127.1 Olea europaea HOM05D002526 ORTHO05D010157 3.5e-60 236.1 221 57.9
SalBow2G1951 Salvia bowleyana HOM05D002526 ORTHO05D010157 3.9e-59 232.6 290 44.8
Lsat_1_v5_gn_4_88500 Lactuca sativa HOM05D002526 ORTHO05D010157 5.6e-58 228.8 270 46.7
AUR62016503 Chenopodium quinoa HOM05D002526 ORTHO05D010157 9.6e-58 228.0 220 54.1
Actinidia01740 Actinidia chinensis HOM05D002526 ORTHO05D010157 6.2e-57 225.3 270 49.6
AUR62011678 Chenopodium quinoa HOM05D002526 ORTHO05D010157 1.4e-56 224.2 223 53.4
Carub.0001s1507 Capsella rubella HOM05D002526 ORTHO05D010157 6.9e-56 221.9 241 49.0
AL1G27410 Arabidopsis lyrata HOM05D002526 ORTHO05D010157 9.0e-56 221.5 239 49.4
Aqoxy7G03644 Aquilegia oxysepala HOM05D002526 ORTHO05D010157 1.5e-55 220.7 295 47.1
Sp1g13640 Schrenkiella parvula HOM05D002526 ORTHO05D010157 1.5e-55 220.7 236 49.6
CARHR015850 Cardamine hirsuta HOM05D002526 ORTHO05D010157 3.4e-55 219.5 241 48.5
Thhalv10008365m.g Eutrema salsugineum HOM05D002526 ORTHO05D010157 3.4e-55 219.5 277 44.0
Aa31LG7G90 Aethionema arabicum HOM05D002526 ORTHO05D010157 2.9e-54 216.5 236 48.7
BraA06t24312Z Brassica rapa HOM05D002526 ORTHO05D010157 1.9e-53 213.8 250 47.2
AT1G15320 Arabidopsis thaliana HOM05D002526 ORTHO05D010157 5.4e-53 212.2 237 48.9
A06p11330 Brassica napus HOM05D002526 ORTHO05D010157 5.4e-53 212.2 251 46.6
BolC5t30082H Brassica oleracea HOM05D002526 ORTHO05D010157 1.2e-52 211.1 241 47.7
EL10Ac9g22041 Beta vulgaris HOM05D002526 ORTHO05D010157 1.6e-52 210.7 302 41.4
ECA232G1362 Erigeron canadensis HOM05D002526 ORTHO05D010157 2.7e-52 209.9 282 44.7
THA.LOC104812514 Tarenaya hassleriana HOM05D002526 ORTHO05D010157 8.7e-51 204.9 234 47.4
FAN02G2169 Fragaria x ananassa HOM05D002526 ORTHO05D010157 2.5e-50 203.4 194 56.2
Gohir.D05G123550 Gossypium hirsutum HOM05D002526 ORTHO05D010157 1.8e-48 197.2 180 57.2
Sc15g0001450 Simmondsia chinensis HOM05D002526 ORTHO05D010157 4.0e-48 196.1 225 46.7
BcaC05g25469 Brassica carinata HOM05D002526 ORTHO05D010157 3.8e-46 189.5 243 44.4
PSO161G0040 Papaver somniferum HOM05D002526 ORTHO05D010157 1.3e-43 181.0 263 43.0
PGR102G2637 Punica granatum HOM05D002526 ORTHO05D010157 1.5e-42 177.6 262 42.7
DCAR_025516 Daucus carota HOM05D002526 ORTHO05D004039 2.1e-41 173.7 244 42.6
Ah.01g021710 Amaranthus hybridus HOM05D002526 ORTHO05D010157 8.2e-41 171.8 219 46.6
C05p13450 Brassica napus HOM05D002526 ORTHO05D010157 4.5e-39 166.0 186 48.9
FAN02G0105 Fragaria x ananassa HOM05D002526 ORTHO05D010157 6.3e-33 145.6 116 63.8
unitig_0.g1112 Utricularia gibba HOM05D002081 ORTHO05D002088 2.0e-31 140.6 232 38.8
Cpa.g.sc938.3 Carica papaya HOM05D002526 ORTHO05D010157 2.9e-30 136.7 213 40.8
BcaC03g16017 Brassica carinata HOM05D002526 ORTHO05D010157 2.0e-18 97.4 97 46.4
BcaC01g00573 Brassica carinata HOM05D002526 ORTHO05D010157 2.2e-17 94.0 96 47.9
SEGI_30845 Sequoiadendron giganteum HOM05D002526 ORTHO05D010157 1.3e-14 84.7 207 30.4
SEGI_27567 Sequoiadendron giganteum HOM05D002526 ORTHO05D010157 1.7e-14 84.3 207 29.0
HPP92_021873 Vanilla planifolia HOM05D002526 ORTHO05D010157 1.7e-14 84.3 220 31.8
C09p66980 Brassica napus HOM05D002526 ORTHO05D010157 1.0e-11 75.1 81 44.4
BcaC02g09864 Brassica carinata HOM05D002526 ORTHO05D010157 6.7e-11 72.4 81 43.2
C04p35770 Brassica napus HOM05D002526 ORTHO05D010157 6.7e-11 72.4 81 43.2
BolC4t25223H Brassica oleracea HOM05D002526 ORTHO05D010157 6.7e-11 72.4 81 43.2
BolC2t09789H Brassica oleracea HOM05D002526 ORTHO05D010157 2.0e-10 70.9 81 42.0
COL.COLO4_12110 Corchorus olitorius HOM05D001914 ORTHO05D000623 3.3e-10 70.1 252 28.2
C02p37700 Brassica napus HOM05D002526 ORTHO05D010157 5.7e-10 69.3 81 40.7
C03p81490 Brassica napus HOM05D002526 ORTHO05D010157 1.8e-08 64.3 80 41.2
BolC3t20420H Brassica oleracea HOM05D002526 ORTHO05D010157 1.8e-08 64.3 80 41.2
AUR62000548 Chenopodium quinoa HOM05D000828 ORTHO05D000623 3.5e-07 60.1 212 28.8
Lj4g0022788 Lotus japonicus HOM05D000828 ORTHO05D000623 3.8e-06 56.6 218 26.6
AUR62006900 Chenopodium quinoa HOM05D000828 ORTHO05D000623 5.0e-06 56.2 199 26.1
EL10Ac4g09671 Beta vulgaris HOM05D000828 ORTHO05D000623 6.5e-06 55.8 203 27.1
Peaxi162Scf00353g00023 Petunia axillaris HOM05D000828 ORTHO05D000623 8.5e-06 55.5 230 24.3


User provided reference genes

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