Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g035570 Solanum pennellii HOM05D007722 ORTHO05D009730 5.4e-76 287.7 160 100.0
Solyc03g116660.3 Solanum lycopersicum HOM05D007722 ORTHO05D009730 1.7e-74 282.7 160 98.1
PGSC0003DMG401000617 Solanum tuberosum HOM05D007722 ORTHO05D009730 4.9e-53 211.5 147 86.4
Nitab4.5_0011590g0030 Nicotiana tabacum HOM05D007722 ORTHO05D009730 1.2e-43 180.3 155 74.2
Nitab4.5_0007793g0010 Nicotiana tabacum HOM05D007722 ORTHO05D009730 6.0e-43 177.9 146 76.7
Peaxi162Scf00332g00773 Petunia axillaris HOM05D007722 ORTHO05D009730 1.4e-39 166.8 142 73.9
Dinv30597 Davidia involucrata HOM05D007722 ORTHO05D009730 2.1e-19 99.8 127 48.8
Oeu045155.1 Olea europaea HOM05D007722 ORTHO05D009730 5.1e-18 95.1 108 50.9
TAR636G1020 Trochodendron aralioides HOM05D007722 ORTHO05D009730 1.1e-17 94.0 114 50.9
COL.COLO4_12955 Corchorus olitorius HOM05D007722 ORTHO05D009730 9.0e-15 84.3 109 45.9
CSS0036618 Camellia sinensis var. sinensis HOM05D007722 ORTHO05D009730 2.0e-14 83.2 117 48.7
Gohir.A10G073900 Gossypium hirsutum HOM05D007722 ORTHO05D009730 1.3e-13 80.5 85 49.4
Gohir.D10G075700 Gossypium hirsutum HOM05D007722 ORTHO05D009730 1.3e-13 80.5 85 49.4
MBI01_g35411_MAGBIO Magnolia biondii HOM05D007722 ORTHO05D009730 1.3e-13 80.5 77 53.2
Prupe.3G085400 Prunus persica HOM05D007722 ORTHO05D009730 1.3e-13 80.5 81 53.1
Gorai.011G083600 Gossypium raimondii HOM05D007722 ORTHO05D009730 6.5e-13 78.2 76 50.0
Thecc.06G022100 Theobroma cacao HOM05D007722 ORTHO05D009730 1.9e-12 76.6 85 48.2
Duzib160G0092 Durio zibethinus HOM05D007722 ORTHO05D009730 3.2e-12 75.9 49 67.3
Migut.D01071 Erythranthe guttata HOM05D007722 ORTHO05D009730 3.2e-12 75.9 106 47.2
Gohir.A05G126200 Gossypium hirsutum HOM05D007722 ORTHO05D009730 7.1e-12 74.7 99 45.5
Gohir.D05G127100 Gossypium hirsutum HOM05D007722 ORTHO05D009730 7.1e-12 74.7 99 45.5
Rhsim08G0213600 Rhododendron simsii HOM05D007722 ORTHO05D009730 9.3e-12 74.3 120 41.7
Haze_16545 Corylus avellana HOM05D007722 ORTHO05D009730 1.6e-11 73.6 76 52.6
Sc10g0005890 Simmondsia chinensis HOM05D007722 ORTHO05D009730 1.6e-11 73.6 48 66.7
Gorai.009G131200 Gossypium raimondii HOM05D007722 ORTHO05D009730 2.1e-11 73.2 99 46.5
Lalb_Chr04g0262381 Lupinus albus HOM05D007722 ORTHO05D009730 2.1e-11 73.2 77 55.8
MD17G1210100 Malus domestica HOM05D007722 ORTHO05D009730 2.1e-11 73.2 131 41.2
Potri.001G192500 Populus trichocarpa HOM05D007722 ORTHO05D009730 2.1e-11 73.2 112 43.8
FAN09G0448 Fragaria x ananassa HOM05D007722 ORTHO05D009730 2.7e-11 72.8 78 51.3
Aqoxy7G03685 Aquilegia oxysepala HOM05D007722 ORTHO05D009730 3.5e-11 72.4 80 48.8
EL10Ac9g21908 Beta vulgaris HOM05D007722 ORTHO05D009730 3.5e-11 72.4 111 45.9
FvH4_6g29860 Fragaria vesca HOM05D007722 ORTHO05D009730 3.5e-11 72.4 78 52.6
FAN14G1239 Fragaria x ananassa HOM05D007722 ORTHO05D009730 3.5e-11 72.4 78 52.6
GSVIVG01017323001 Vitis vinifera HOM05D007722 ORTHO05D009730 3.5e-11 72.4 140 44.3
CANSAT56G0372 Cannabis sativa HOM05D007722 ORTHO05D009730 4.6e-11 72.0 75 64.0
QL05p029543 Quercus lobata HOM05D007722 ORTHO05D009730 4.6e-11 72.0 48 68.8
Medtr4g010270 Medicago truncatula HOM05D007722 ORTHO05D009730 1.3e-10 70.5 49 63.3
Phvul.010G155500 Phaseolus vulgaris HOM05D007722 ORTHO05D009730 1.3e-10 70.5 121 40.5
Psat7g256360 Pisum sativum HOM05D007722 ORTHO05D009730 1.3e-10 70.5 118 44.1
Lalb_Chr25g0279351 Lupinus albus HOM05D007722 ORTHO05D009730 1.8e-10 70.1 48 66.7
Nn2g12058 Nelumbo nucifera HOM05D007722 ORTHO05D009730 1.8e-10 70.1 77 46.8
Lj3g0002989 Lotus japonicus HOM05D007722 ORTHO05D009730 3.0e-10 69.3 116 50.9
Carub.0003s1552 Capsella rubella HOM05D007722 ORTHO05D009730 3.9e-10 68.9 75 53.3
Glyma.08G212200 Glycine max HOM05D007722 ORTHO05D009730 3.9e-10 68.9 48 66.7
PGR102G2260 Punica granatum HOM05D007722 ORTHO05D009730 3.9e-10 68.9 85 50.6
VMungo0331G1522 Vigna mungo HOM05D007722 ORTHO05D009730 6.7e-10 68.2 73 50.7
SGA_v2.0_scaffold37G14773 Striga asiatica HOM05D007722 ORTHO05D009730 2.5e-09 66.2 130 38.5
ECA232G4504 Erigeron canadensis HOM05D000985 ORTHO05D000866 3.3e-09 65.9 73 45.2
Cfa001975 Carpinus fangiana HOM05D007722 ORTHO05D009730 4.3e-09 65.5 129 39.5
HanXRQChr16g0500401 Helianthus annuus HOM05D007722 ORTHO05D009730 4.3e-09 65.5 153 44.4
unitig_0.g1117 Utricularia gibba HOM05D007722 ORTHO05D009730 5.7e-09 65.1 49 59.2
CDE06G0954 Ceratophyllum demersum HOM05D007722 ORTHO05D009730 7.4e-09 64.7 76 47.4
Glyma.07G030600 Glycine max HOM05D007722 ORTHO05D009730 9.7e-09 64.3 121 42.1
Thhalv10021781m.g Eutrema salsugineum HOM05D007722 ORTHO05D009730 1.6e-08 63.5 47 53.2
Sp3g14100 Schrenkiella parvula HOM05D007722 ORTHO05D009730 2.2e-08 63.2 47 53.2
CARHR090870 Cardamine hirsuta HOM05D007722 ORTHO05D009730 3.7e-08 62.4 47 53.2
A01p38330 Brassica napus HOM05D007722 ORTHO05D009730 6.3e-08 61.6 48 54.2
BraA01t03884Z Brassica rapa HOM05D007722 ORTHO05D009730 6.3e-08 61.6 48 54.2
DCAR_025509 Daucus carota HOM05D007722 ORTHO05D009730 6.3e-08 61.6 135 38.5
Sabra01G0149600 Salix brachista HOM05D007722 ORTHO05D009730 6.3e-08 61.6 39 64.1
BcaB04g20904 Brassica carinata HOM05D007722 ORTHO05D009730 8.2e-08 61.2 48 54.2
CDE07G1717 Ceratophyllum demersum HOM05D007722 ORTHO05D009730 1.1e-07 60.8 76 44.7
Manes.04G113466 Manihot esculenta HOM05D007722 ORTHO05D009730 4.1e-07 58.9 107 39.3
THA.LOC104810506 Tarenaya hassleriana HOM05D007722 ORTHO05D009730 4.1e-07 58.9 136 42.6
BcaC05g28932 Brassica carinata HOM05D000020 ORTHO05D000543 5.3e-07 58.5 47 48.9
C05p50590 Brassica napus HOM05D000020 ORTHO05D000543 5.3e-07 58.5 47 48.9
Zm00001eb221290 Zea mays HOM05D007722 ORTHO05D009730 5.3e-07 58.5 77 53.2
Aa31LG8G2980 Aethionema arabicum HOM05D007722 ORTHO05D009730 9.0e-07 57.8 47 53.2
CiPaw.01G246700 Carya illinoinensis HOM05D007722 ORTHO05D009730 9.0e-07 57.8 69 46.4
Eucgr.L02714 Eucalyptus grandis HOM05D007722 ORTHO05D009730 9.0e-07 57.8 123 39.0
Manes.11G056000 Manihot esculenta HOM05D007722 ORTHO05D009730 9.0e-07 57.8 136 35.3
Os01g0392100 Oryza sativa ssp. japonica HOM05D007722 ORTHO05D009730 9.0e-07 57.8 42 57.1
HPP92_000666 Vanilla planifolia HOM05D007722 ORTHO05D009730 9.0e-07 57.8 90 38.9
BcaC09g48556 Brassica carinata HOM05D007722 ORTHO05D009730 1.5e-06 57.0 112 43.8
Eucgr.F03868 Eucalyptus grandis HOM05D007722 ORTHO05D009730 2.0e-06 56.6 124 38.7
THA.LOC104818136 Tarenaya hassleriana HOM05D007722 ORTHO05D009730 2.6e-06 56.2 48 56.2
ClCG09G002890 Citrullus lanatus HOM05D007722 ORTHO05D009730 4.5e-06 55.5 131 37.4
BcaB06g25688 Brassica carinata HOM05D000020 ORTHO05D001963 5.9e-06 55.1 44 52.3
Sed0026756 Sechium edule HOM05D007722 ORTHO05D009730 1.0e-05 54.3 139 39.6


User provided reference genes

Program Settings