Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g035510 Solanum pennellii HOM05D004884 ORTHO05D005873 1.3e-79 299.7 148 100.0
Solyc03g116600.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 2.8e-79 298.5 148 99.3
PGSC0003DMG400000635 Solanum tuberosum HOM05D004884 ORTHO05D005873 8.2e-79 297.0 148 98.0
CAN.G407.94 Capsicum annuum HOM05D004884 ORTHO05D005873 9.1e-78 293.5 148 95.9
Solyc06g068080.4 Solanum lycopersicum HOM05D004884 ORTHO05D005873 3.8e-76 288.1 148 93.9
Sopen06g025360 Solanum pennellii HOM05D004884 ORTHO05D005873 3.8e-76 288.1 148 93.9
PGSC0003DMG400028511 Solanum tuberosum HOM05D004884 ORTHO05D005873 3.8e-76 288.1 148 93.9
Prupe.3G084300 Prunus persica HOM05D004884 ORTHO05D005873 1.9e-75 285.8 148 91.9
MD17G1208900 Malus domestica HOM05D004884 ORTHO05D005873 9.4e-75 283.5 148 90.5
PGR031G3479 Punica granatum HOM05D004884 ORTHO05D005873 3.6e-74 281.6 148 89.9
Peaxi162Scf00207g00728 Petunia axillaris HOM05D004884 ORTHO05D005873 7.9e-74 280.4 148 91.2
Dinv30589 Davidia involucrata HOM05D004884 ORTHO05D005873 1.4e-73 279.6 146 90.4
Lsat_1_v5_gn_1_2440 Lactuca sativa HOM05D004884 ORTHO05D005873 1.4e-73 279.6 148 89.9
ECA240G3509 Erigeron canadensis HOM05D004884 ORTHO05D005873 1.8e-73 279.3 148 89.9
FvH4_6g29940 Fragaria vesca HOM05D004884 ORTHO05D005873 1.8e-73 279.3 148 89.9
FAN14G1538 Fragaria x ananassa HOM05D004884 ORTHO05D005873 1.8e-73 279.3 148 89.9
THA.LOC104808231 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 1.8e-73 279.3 148 87.8
Eucgr.F02527 Eucalyptus grandis HOM05D004884 ORTHO05D005873 2.3e-73 278.9 148 89.9
MSTRG.9432 Avicennia marina HOM05D004884 ORTHO05D005873 3.0e-73 278.5 148 90.5
SalBow3G1656 Salvia bowleyana HOM05D004884 ORTHO05D005873 3.9e-73 278.1 148 90.5
FAN09G2574 Fragaria x ananassa HOM05D004884 ORTHO05D005873 5.1e-73 277.7 148 89.2
HanXRQChr02g0046821 Helianthus annuus HOM05D004884 ORTHO05D005873 5.1e-73 277.7 148 89.2
Hma1.2p1_0515F.1_g170110 Hydrangea macrophylla HOM05D004884 ORTHO05D005873 5.1e-73 277.7 148 89.2
RcHm_v2.0_Chr2g0135941 Rosa chinensis HOM05D004884 ORTHO05D005873 5.1e-73 277.7 148 87.2
THA.LOC104812503 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 5.1e-73 277.7 148 85.8
CSS0003587 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 6.7e-73 277.3 146 89.7
Medtr2g103690 Medicago truncatula HOM05D004884 ORTHO05D005873 6.7e-73 277.3 148 87.8
SGA_v2.0_scaffold117G32369 Striga asiatica HOM05D004884 ORTHO05D005873 6.7e-73 277.3 148 90.5
GSVIVG01017313001 Vitis vinifera HOM05D004884 ORTHO05D005873 6.7e-73 277.3 148 88.5
Rhsim10G0061400 Rhododendron simsii HOM05D004884 ORTHO05D005873 8.8e-73 276.9 146 89.0
ECA247G2927 Erigeron canadensis HOM05D001354 ORTHO05D002582 1.1e-72 276.6 148 89.2
FAN02G1988 Fragaria x ananassa HOM05D004884 ORTHO05D005873 1.1e-72 276.6 148 89.2
Glyma.08G211500 Glycine max HOM05D004884 ORTHO05D005873 1.1e-72 276.6 148 87.2
Oeu045160.1 Olea europaea HOM05D004884 ORTHO05D005873 1.1e-72 276.6 148 89.9
Phvul.010G154800 Phaseolus vulgaris HOM05D004884 ORTHO05D005873 1.1e-72 276.6 148 87.2
VMungo0331G0880 Vigna mungo HOM05D004884 ORTHO05D005873 1.1e-72 276.6 148 87.2
Cc04_g04240 Coffea canephora HOM05D004884 ORTHO05D005873 2.0e-72 275.8 148 89.9
Migut.D01065 Erythranthe guttata HOM05D004884 ORTHO05D005873 2.0e-72 275.8 148 89.2
Lalb_Chr04g0262431 Lupinus albus HOM05D004884 ORTHO05D005873 2.6e-72 275.4 148 87.2
Oeu052257.1 Olea europaea HOM05D004884 ORTHO05D005873 4.4e-72 274.6 148 89.2
Psat5g301920 Pisum sativum HOM05D004884 ORTHO05D005873 4.4e-72 274.6 148 87.2
QL05p029075 Quercus lobata HOM05D004884 ORTHO05D005873 4.4e-72 274.6 147 87.8
Actinidia18100 Actinidia chinensis HOM05D004884 ORTHO05D005873 5.7e-72 274.2 146 88.4
Lj3g0000080 Lotus japonicus HOM05D004884 ORTHO05D005873 7.4e-72 273.9 148 85.8
vmacro20098 Vaccinium macrocarpon HOM05D004884 ORTHO05D005873 1.3e-71 273.1 148 87.8
Glyma.07G031300 Glycine max HOM05D004884 ORTHO05D005873 1.7e-71 272.7 148 86.5
CiPaw.08G011500 Carya illinoinensis HOM05D004884 ORTHO05D005873 2.8e-71 271.9 147 87.8
COL.COLO4_12946 Corchorus olitorius HOM05D004884 ORTHO05D005873 2.8e-71 271.9 148 86.5
PSO455G0277 Papaver somniferum HOM05D004884 ORTHO05D005873 2.8e-71 271.9 148 87.2
Thecc.06G021400 Theobroma cacao HOM05D004884 ORTHO05D005873 2.8e-71 271.9 148 86.5
Lalb_Chr22g0350881 Lupinus albus HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 86.5
Sp1g13700 Schrenkiella parvula HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 84.5
BcaB03g14545 Brassica carinata HOM05D004884 ORTHO05D005873 4.8e-71 271.2 148 84.5
BcaC05g25475 Brassica carinata HOM05D004884 ORTHO05D005873 4.8e-71 271.2 148 84.5
BcaC05g25490 Brassica carinata HOM05D004884 ORTHO05D005873 4.8e-71 271.2 148 84.5
A06p11400 Brassica napus HOM05D004884 ORTHO05D005873 4.8e-71 271.2 148 84.5
A09p61460 Brassica napus HOM05D004884 ORTHO05D005873 4.8e-71 271.2 148 84.5
C05p13510 Brassica napus HOM05D004884 ORTHO05D005873 4.8e-71 271.2 148 84.5
C08p45030 Brassica napus HOM05D004884 ORTHO05D005873 4.8e-71 271.2 148 84.5
BolC5t30088H Brassica oleracea HOM05D004884 ORTHO05D005873 4.8e-71 271.2 148 84.5
BraA06t24317Z Brassica rapa HOM05D004884 ORTHO05D005873 4.8e-71 271.2 148 84.5
BraA09t41517Z Brassica rapa HOM05D004884 ORTHO05D005873 4.8e-71 271.2 148 84.5
Thhalv10009024m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 4.8e-71 271.2 148 84.5
unitig_747.g21296 Utricularia gibba HOM05D004884 ORTHO05D005873 4.8e-71 271.2 148 85.8
Duzib235G0621 Durio zibethinus HOM05D004884 ORTHO05D005873 6.3e-71 270.8 148 87.2
CARHR015900 Cardamine hirsuta HOM05D004884 ORTHO05D005873 8.2e-71 270.4 146 84.2
Carub.0001s1514 Capsella rubella HOM05D004884 ORTHO05D005873 1.4e-70 269.6 148 82.4
AL1G27470 Arabidopsis lyrata HOM05D004884 ORTHO05D005873 1.8e-70 269.2 146 83.6
AT1G15370 Arabidopsis thaliana HOM05D004884 ORTHO05D005873 1.8e-70 269.2 146 83.6
BcaC07g41506 Brassica carinata HOM05D004884 ORTHO05D005873 1.8e-70 269.2 148 83.8
BolC8t52049H Brassica oleracea HOM05D004884 ORTHO05D005873 1.8e-70 269.2 148 83.8
Gohir.D10G076700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 2.4e-70 268.9 148 86.5
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 2.4e-70 268.9 139 93.5
Ciclev10026708m.g Citrus clementina HOM05D004884 ORTHO05D005873 3.1e-70 268.5 148 86.5
FAN05G0038 Fragaria x ananassa HOM05D004884 ORTHO05D005873 3.1e-70 268.5 168 79.2
Manes.04G114100 Manihot esculenta HOM05D004884 ORTHO05D005873 4.1e-70 268.1 146 86.3
MBI04_g07835_MAGBIO Magnolia biondii HOM05D004884 ORTHO05D005873 6.9e-70 267.3 146 87.7
PSO170G2441 Papaver somniferum HOM05D004884 ORTHO05D005873 6.9e-70 267.3 148 85.8
Potri.001G193100 Populus trichocarpa HOM05D004884 ORTHO05D005873 6.9e-70 267.3 148 83.8
Sabra01G0135700 Salix brachista HOM05D004884 ORTHO05D005873 6.9e-70 267.3 148 83.8
Atru.chr1.2995 Acer truncatum HOM05D004884 ORTHO05D005873 9.1e-70 266.9 148 85.8
Aqoxy1G02408 Aquilegia oxysepala HOM05D004884 ORTHO05D005873 1.2e-69 266.5 146 85.6
AUR62012381 Chenopodium quinoa HOM05D004884 ORTHO05D005873 2.0e-69 265.8 148 85.1
Thhalv10019295m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 2.6e-69 265.4 148 82.4
Cfa013154 Carpinus fangiana HOM05D004884 ORTHO05D005873 5.9e-69 264.2 148 85.1
ClCG05G016940 Citrullus lanatus HOM05D004884 ORTHO05D005873 7.7e-69 263.8 148 85.1
MELO3C003694.2 Cucumis melo HOM05D004884 ORTHO05D005873 7.7e-69 263.8 148 85.1
Gohir.A10G074700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.0e-68 263.5 148 85.1
QL02p021869 Quercus lobata HOM05D004884 ORTHO05D005873 1.3e-68 263.1 147 84.4
CsaV3_3G046450 Cucumis sativus L. HOM05D004884 ORTHO05D005873 1.7e-68 262.7 148 85.1
Sed0027624 Sechium edule HOM05D004884 ORTHO05D005873 3.8e-68 261.5 148 84.5
TWI75G0638 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 6.5e-68 260.8 148 80.4
TAR636G0424 Trochodendron aralioides HOM05D004884 ORTHO05D005873 1.9e-67 259.2 146 82.9
Nn2g12037 Nelumbo nucifera HOM05D004884 ORTHO05D005873 2.5e-67 258.8 148 82.4
EL10Ac2g04219 Beta vulgaris HOM05D004884 ORTHO05D005873 4.2e-67 258.1 158 79.1
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 1.2e-66 256.5 146 82.2
Solyc11g008330.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 2.3e-65 252.3 148 79.7
Zm00001eb064920 Zea mays HOM05D004884 ORTHO05D005873 3.9e-65 251.5 146 80.1
Sed0022166 Sechium edule HOM05D004884 ORTHO05D005873 7.4e-64 247.3 140 82.9
TWI34G0752 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 7.4e-64 247.3 148 77.7
Glyma.15G008700 Glycine max HOM05D004884 ORTHO05D005873 1.3e-63 246.5 130 88.5
Aa31LG4G430 Aethionema arabicum HOM05D004884 ORTHO05D005873 2.2e-63 245.7 133 84.2
AUR62031521 Chenopodium quinoa HOM05D004884 ORTHO05D005873 1.4e-62 243.0 198 63.6
Nitab4.5_0001764g0110 Nicotiana tabacum HOM05D004884 ORTHO05D005873 7.0e-62 240.7 124 93.5
CSS0011163 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 9.1e-62 240.4 129 85.3
Gohir.D06G099800 Gossypium hirsutum HOM05D004884 ORTHO05D005873 2.6e-61 238.8 144 77.1
Gorai.010G114700 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.7e-60 236.1 144 75.7
arahy.Tifrunner.gnm1.ann1.Q10AU9 Arachis hypogaea HOM05D004884 ORTHO05D005873 6.5e-60 234.2 123 89.4
arahy.Tifrunner.gnm1.ann1.W4DERE Arachis hypogaea HOM05D004884 ORTHO05D005873 6.5e-60 234.2 123 89.4
Dinv38109 Davidia involucrata HOM05D000250 ORTHO05D002477 8.5e-60 233.8 123 88.6
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 1.5e-59 233.0 135 78.5
Peaxi162Scf00332g00767 Petunia axillaris HOM05D004884 ORTHO05D005873 2.5e-59 232.3 130 86.9
EL10Ac9g22900 Beta vulgaris HOM05D004884 ORTHO05D005873 4.2e-59 231.5 148 74.3
Actinidia36285 Actinidia chinensis HOM05D004884 ORTHO05D005873 7.2e-59 230.7 123 88.6
SalBow6G6988 Salvia bowleyana HOM05D004884 ORTHO05D005873 1.2e-58 229.9 122 91.8
Gorai.011G082800 Gossypium raimondii HOM05D004884 ORTHO05D005873 2.3e-57 225.7 123 86.2
Sc23g0006790 Simmondsia chinensis HOM05D004884 ORTHO05D005873 2.3e-57 225.7 123 86.2
AUR62012868 Chenopodium quinoa HOM05D004884 ORTHO05D005873 6.7e-57 224.2 146 72.6
Nitab4.5_0006187g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 2.2e-55 219.2 130 80.0
SMO143G0054 Selaginella moellendorffii HOM05D004884 ORTHO05D005873 4.8e-55 218.0 146 68.5
Peaxi162Scf00145g01210 Petunia axillaris HOM05D004884 ORTHO05D005873 8.2e-55 217.2 127 80.3
Sabra06G0198100 Salix brachista HOM05D004884 ORTHO05D005873 1.2e-53 213.4 123 79.7
Pp3c18_11860 Physcomitrium patens HOM05D004884 ORTHO05D005873 2.9e-52 208.8 146 64.4
CAN.G321.60 Capsicum annuum HOM05D004884 ORTHO05D005873 3.8e-52 208.4 121 81.0
Potri.006G253700 Populus trichocarpa HOM05D004884 ORTHO05D005873 6.1e-50 201.1 148 65.5
AagrBONN_evm.TU.Sc2ySwM_368.2705 Anthoceros agrestis HOM05D004884 ORTHO05D005873 5.2e-49 198.0 145 64.1
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 3.7e-47 191.8 118 76.3
Mapoly0005s0226 Marchantia polymorpha HOM05D004884 ORTHO05D005873 2.7e-45 185.7 146 56.8
QL05p029040 Quercus lobata HOM05D004884 ORTHO05D005873 2.1e-42 176.0 113 75.2
Gorai.001G184900 Gossypium raimondii HOM05D004884 ORTHO05D005873 4.0e-41 171.8 148 61.5
BcaC07g41508 Brassica carinata HOM05D004884 ORTHO05D005873 3.4e-40 168.7 119 68.9
Sopen11g004140 Solanum pennellii HOM05D004884 ORTHO05D005873 3.4e-40 168.7 148 60.1
Gohir.D07G161600 Gossypium hirsutum HOM05D004884 ORTHO05D005873 5.7e-40 167.9 148 60.8
Nitab4.5_0005235g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 7.5e-40 167.5 119 69.7
Haze_21525 Corylus avellana HOM05D004884 ORTHO05D005873 9.2e-38 160.6 176 53.4
CBR_g8585 Chara braunii HOM05D004884 ORTHO05D005873 1.3e-36 156.8 143 53.8
Oeu024660.1 Olea europaea HOM05D004884 ORTHO05D005873 2.3e-33 146.0 82 85.4
Gohir.D13G076450 Gossypium hirsutum HOM05D004884 ORTHO05D005873 2.6e-32 142.5 84 79.8
Gorai.013G087100 Gossypium raimondii HOM05D004884 ORTHO05D005873 3.7e-31 138.7 89 76.4
Nitab4.5_0001450g0150 Nicotiana tabacum HOM05D004884 ORTHO05D005873 8.0e-26 120.9 86 67.4
DCAR_015322 Daucus carota HOM05D004884 ORTHO05D005873 2.4e-22 109.4 58 89.7
Nitab4.5_0000620g0040 Nicotiana tabacum HOM05D004884 ORTHO05D005873 3.2e-22 109.0 65 83.1
Hund04518 Selenicereus undatus HOM05D004884 ORTHO05D005873 7.8e-21 104.4 60 85.0
Nn8g39461 Nelumbo nucifera HOM05D004884 ORTHO05D005873 5.1e-20 101.7 63 76.2
Gohir.A06G098210 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.5e-19 100.1 63 74.6
Gohir.A13G076901 Gossypium hirsutum HOM05D004884 ORTHO05D005873 3.3e-19 99.0 128 47.7
Cre12.g561200 Chlamydomonas reinhardtii HOM05D004884 ORTHO05D005873 3.4e-16 89.0 136 36.0
TPR.G29435 Trifolium pratense HOM05D004884 ORTHO05D005873 1.3e-15 87.0 46 82.6
Gohir.D01G156500 Gossypium hirsutum HOM05D004884 ORTHO05D005873 2.9e-15 85.9 49 79.6
PRCOL_00001860 Prasinoderma coloniale HOM05D004884 ORTHO05D005873 6.4e-15 84.7 141 34.0
MCO11G456 Micromonas commoda HOM05D004884 ORTHO05D005873 1.4e-14 83.6 152 31.6
CAN.G185.10 Capsicum annuum HOM05D004884 ORTHO05D005873 6.8e-09 64.7 63 55.6


User provided reference genes

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