Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g035470 Solanum pennellii HOM05D006819 ORTHO05D008763 1.2e-187 661.0 829 100.0
Solyc03g116560.1 Solanum lycopersicum HOM05D006819 ORTHO05D008763 4.2e-172 609.4 812 98.8
PGSC0003DMG400000632 Solanum tuberosum HOM05D006819 ORTHO05D008763 3.1e-159 566.6 815 96.7
CAN.G407.98 Capsicum annuum HOM05D006819 ORTHO05D008763 2.2e-144 517.3 815 93.3
Nitab4.5_0010254g0010 Nicotiana tabacum HOM05D006819 ORTHO05D008763 3.4e-142 510.0 816 93.5
Nitab4.5_0001764g0060 Nicotiana tabacum HOM05D006819 ORTHO05D008763 4.2e-140 503.1 814 93.1
Peaxi162Scf00332g00075 Petunia axillaris HOM05D006819 ORTHO05D008763 1.2e-105 388.7 825 86.3
Dinv30584 Davidia involucrata HOM05D006819 ORTHO05D008763 1.6e-91 341.7 254 66.9
Actinidia01760 Actinidia chinensis HOM05D006819 ORTHO05D008763 6.6e-85 319.7 254 63.0
Lj5C69T16 Lonicera japonica HOM05D006819 ORTHO05D008763 9.9e-81 305.8 254 58.7
DCAR_025499 Daucus carota HOM05D006819 ORTHO05D008763 3.9e-77 293.9 827 60.5
vmacro19477 Vaccinium macrocarpon HOM05D006819 ORTHO05D008763 6.6e-77 293.1 256 59.8
CSS0026240 Camellia sinensis var. sinensis HOM05D006819 ORTHO05D008763 9.6e-76 289.3 224 64.3
CSS0002572 Camellia sinensis var. sinensis HOM05D006819 ORTHO05D008763 1.6e-75 288.5 798 81.8
Rhsim08G0214900 Rhododendron simsii HOM05D006819 ORTHO05D008763 8.1e-75 286.2 257 57.6
Migut.D01062 Erythranthe guttata HOM05D006819 ORTHO05D008763 7.6e-73 279.6 255 54.5
Rhsim04G0187400 Rhododendron simsii HOM05D006819 ORTHO05D008763 1.9e-71 275.0 257 57.2
Cc04_g04190 Coffea canephora HOM05D006819 ORTHO05D008763 4.2e-71 273.9 250 58.0
Prupe.3G082900 Prunus persica HOM05D006819 ORTHO05D008763 2.1e-70 271.6 254 55.5
TAR383G0223 Trochodendron aralioides HOM05D006819 ORTHO05D008763 2.3e-69 268.1 254 54.3
HanXRQChr09g0274981 Helianthus annuus HOM05D006819 ORTHO05D008763 3.9e-69 267.3 253 53.8
Ciclev10024942m.g Citrus clementina HOM05D006819 ORTHO05D008763 1.1e-68 265.8 255 56.9
Lsat_1_v5_gn_4_106101 Lactuca sativa HOM05D006819 ORTHO05D008763 4.3e-68 263.8 253 53.4
SGA_v2.0_scaffold16G07604 Striga asiatica HOM05D006819 ORTHO05D008763 4.3e-68 263.8 255 52.5
QL05p028543 Quercus lobata HOM05D006819 ORTHO05D008763 3.6e-67 260.8 254 55.1
Cpa.g.sc10.236 Carica papaya HOM05D006819 ORTHO05D008763 1.8e-66 258.5 254 54.7
Atru.chr1.3043 Acer truncatum HOM05D006819 ORTHO05D008763 3.1e-66 257.7 255 54.1
Haze_16531 Corylus avellana HOM05D006819 ORTHO05D008763 1.2e-65 255.8 254 54.7
MD17G1208200 Malus domestica HOM05D006819 ORTHO05D008763 1.2e-65 255.8 255 53.7
Nn8g39431 Nelumbo nucifera HOM05D006819 ORTHO05D008763 2.6e-65 254.6 254 53.5
Cfa001984 Carpinus fangiana HOM05D006819 ORTHO05D008763 4.5e-65 253.8 255 54.5
RcHm_v2.0_Chr2g0136061 Rosa chinensis HOM05D006819 ORTHO05D008763 1.3e-64 252.3 255 52.9
ClCG07G012740 Citrullus lanatus HOM05D006819 ORTHO05D008763 1.7e-64 251.9 254 50.4
Duzib235G1541 Durio zibethinus HOM05D006819 ORTHO05D008763 3.2e-63 247.7 253 52.2
FvH4_6g30030 Fragaria vesca HOM05D006819 ORTHO05D008763 5.4e-63 246.9 255 52.9
FAN14G2986 Fragaria x ananassa HOM05D006819 ORTHO05D008763 5.4e-63 246.9 255 52.9
FAN05G3290 Fragaria x ananassa HOM05D006819 ORTHO05D008763 7.1e-63 246.5 254 52.8
Hund00538 Selenicereus undatus HOM05D006819 ORTHO05D008763 1.2e-62 245.7 254 50.8
COL.COLO4_12924 Corchorus olitorius HOM05D006819 ORTHO05D008763 1.6e-62 245.4 254 52.0
SalBow2G2822 Salvia bowleyana HOM05D006819 ORTHO05D008763 3.5e-62 244.2 255 49.8
Sed0026792 Sechium edule HOM05D006819 ORTHO05D008763 3.5e-62 244.2 254 50.0
GSVIVG01017297001 Vitis vinifera HOM05D006819 ORTHO05D008763 3.5e-62 244.2 253 51.4
SalBow2G3436 Salvia bowleyana HOM05D006819 ORTHO05D008763 6.0e-62 243.4 251 50.2
THA.LOC104815536 Tarenaya hassleriana HOM05D006819 ORTHO05D008763 7.9e-62 243.0 251 51.8
AUR62016357 Chenopodium quinoa HOM05D006819 ORTHO05D008763 1.0e-61 242.7 252 51.2
EL10Ac9g21918 Beta vulgaris HOM05D006819 ORTHO05D008763 1.3e-61 242.3 251 51.0
FAN09G2760 Fragaria x ananassa HOM05D006819 ORTHO05D008763 5.1e-61 240.4 255 51.8
Aqoxy7G03720 Aquilegia oxysepala HOM05D006819 ORTHO05D008763 6.7e-61 240.0 255 48.2
CsaV3_4G001460 Cucumis sativus L. HOM05D006819 ORTHO05D008763 6.7e-61 240.0 255 49.0
Lj3g0013909 Lotus japonicus HOM05D006819 ORTHO05D008763 1.5e-60 238.8 250 50.8
Sp1g39170 Schrenkiella parvula HOM05D006819 ORTHO05D008763 1.5e-60 238.8 254 50.0
CiPaw.02G155800 Carya illinoinensis HOM05D006819 ORTHO05D008763 1.9e-60 238.4 257 50.2
MELO3C017894.2 Cucumis melo HOM05D006819 ORTHO05D008763 2.5e-60 238.0 254 49.2
ECA232G0226 Erigeron canadensis HOM05D006819 ORTHO05D008763 2.5e-60 238.0 255 51.0
AL1G60900 Arabidopsis lyrata HOM05D006819 ORTHO05D008763 1.6e-59 235.3 251 50.6
arahy.Tifrunner.gnm1.ann1.6R2JPG Arachis hypogaea HOM05D006819 ORTHO05D008763 4.8e-59 233.8 253 49.8
arahy.Tifrunner.gnm1.ann1.GQ0MHW Arachis hypogaea HOM05D006819 ORTHO05D008763 4.8e-59 233.8 253 49.8
AUR62011538 Chenopodium quinoa HOM05D006819 ORTHO05D008763 6.2e-59 233.4 255 49.4
TWI18G0691 Tripterygium wilfordii HOM05D006819 ORTHO05D008763 8.1e-59 233.0 254 52.0
AT1G52620 Arabidopsis thaliana HOM05D006819 ORTHO05D008763 1.4e-58 232.3 254 48.8
arahy.Tifrunner.gnm1.ann1.6PYW3K Arachis hypogaea HOM05D006819 ORTHO05D008763 1.4e-58 232.3 253 49.8
arahy.Tifrunner.gnm1.ann1.UYKR6J Arachis hypogaea HOM05D006819 ORTHO05D008763 1.4e-58 232.3 253 49.8
Aa31LG10G2400 Aethionema arabicum HOM05D006819 ORTHO05D008763 2.4e-58 231.5 252 49.2
PGR031G3623 Punica granatum HOM05D006819 ORTHO05D008763 4.0e-58 230.7 257 49.0
Potri.001G139200 Populus trichocarpa HOM05D006819 ORTHO05D008763 3.4e-57 227.6 253 48.6
Carub.0001s4161 Capsella rubella HOM05D006819 ORTHO05D008763 4.5e-57 227.3 254 49.6
TPR.G37179 Trifolium pratense HOM05D006819 ORTHO05D008763 5.8e-57 226.9 252 48.4
Sc10g0005770 Simmondsia chinensis HOM05D006819 ORTHO05D008763 9.9e-57 226.1 254 49.2
Lalb_Chr22g0350931 Lupinus albus HOM05D006819 ORTHO05D008763 2.2e-56 224.9 253 47.8
Medtr2g103520 Medicago truncatula HOM05D006819 ORTHO05D008763 3.8e-56 224.2 254 48.8
A06p01730 Brassica napus HOM05D006819 ORTHO05D008763 1.2e-54 219.2 254 48.8
BraA06t23391Z Brassica rapa HOM05D006819 ORTHO05D008763 6.0e-54 216.9 254 48.4
BcaC08g43437 Brassica carinata HOM05D006819 ORTHO05D008763 1.9e-52 211.8 255 47.8
C06p08050 Brassica napus HOM05D006819 ORTHO05D008763 9.6e-52 209.5 255 47.5
BolC6t35888H Brassica oleracea HOM05D006819 ORTHO05D008763 9.6e-52 209.5 255 47.5
Glyma.13G364500 Glycine max HOM05D006819 ORTHO05D008763 1.3e-51 209.1 255 45.1
Sabra01G0108200 Salix brachista HOM05D006819 ORTHO05D008763 6.2e-51 206.8 247 46.2
Glyma.15G009300 Glycine max HOM05D006819 ORTHO05D008763 1.8e-50 205.3 250 45.2
Eucgr.J03057 Eucalyptus grandis HOM05D006819 ORTHO05D008763 9.0e-50 203.0 257 45.5
Ca_20110_v3 Cicer arietinum L. HOM05D006819 ORTHO05D008763 7.6e-49 199.9 300 40.7
PSO210G6668 Papaver somniferum HOM05D006819 ORTHO05D008763 2.2e-48 198.4 257 44.0
Phvul.005G176600 Phaseolus vulgaris HOM05D006819 ORTHO05D008763 1.9e-47 195.3 250 44.4
CDE02G2030 Ceratophyllum demersum HOM05D006819 ORTHO05D008763 1.0e-45 189.5 250 45.2
Gorai.011G068600 Gossypium raimondii HOM05D006819 ORTHO05D008763 1.8e-45 188.7 226 47.3
PSO210G0638 Papaver somniferum HOM05D006819 ORTHO05D008763 3.0e-45 188.0 257 42.8
CARHR042740 Cardamine hirsuta HOM05D006819 ORTHO05D008763 2.5e-44 184.9 230 45.7
Gohir.D10G064600 Gossypium hirsutum HOM05D006819 ORTHO05D008763 3.3e-44 184.5 226 46.5
Manes.11G054300 Manihot esculenta HOM05D006819 ORTHO05D008763 6.3e-43 180.3 219 44.3
CAN.G273.13 Capsicum annuum HOM05D000004 ORTHO05D000002 2.4e-42 178.3 103 86.4
Thhalv10011244m.g Eutrema salsugineum HOM05D006819 ORTHO05D008763 5.3e-42 177.2 226 44.2
VMungo1080G1389 Vigna mungo HOM05D006819 ORTHO05D008763 1.2e-41 176.0 252 40.5
Ah.01g020740 Amaranthus hybridus HOM05D006819 ORTHO05D008763 1.7e-40 172.2 202 45.0
SHI20606 Sapria himalayana HOM05D006819 ORTHO05D008763 3.6e-38 164.5 225 38.2
Psat5g301600 Pisum sativum HOM05D006819 ORTHO05D008763 6.7e-37 160.2 254 39.0
Oeu015243.5 Olea europaea HOM05D006819 ORTHO05D008763 1.4e-34 152.5 111 61.3
Sc25g0002730 Simmondsia chinensis HOM05D006819 ORTHO05D008763 2.6e-33 148.3 202 43.6
Actinidia15785 Actinidia chinensis HOM05D006819 ORTHO05D008763 3.4e-33 147.9 118 63.6
Thecc.06G069300 Theobroma cacao HOM05D006819 ORTHO05D008763 1.0e-32 146.4 126 56.3
SEGI_26115 Sequoiadendron giganteum HOM05D006819 ORTHO05D008763 2.6e-28 131.7 259 33.2
SalBow2G3112 Salvia bowleyana HOM05D006819 ORTHO05D008763 2.2e-27 128.6 110 57.3
ATR0322G052 Amborella trichopoda HOM05D006819 ORTHO05D008763 1.1e-26 126.3 128 49.2
Psat0s2501g0040 Pisum sativum HOM05D006819 ORTHO05D008763 1.7e-24 119.0 135 49.6
Psat0s2501g0080 Pisum sativum HOM05D006819 ORTHO05D008763 1.7e-24 119.0 135 49.6
Gohir.A10G062900 Gossypium hirsutum HOM05D006819 ORTHO05D008763 2.2e-24 118.6 132 47.0
Oeu026322.1 Olea europaea HOM05D006819 ORTHO05D008763 2.7e-22 111.7 96 58.3
Zm00001eb196310 Zea mays HOM05D006819 ORTHO05D008763 1.0e-21 109.8 152 42.1
Atru.chr4.3032 Acer truncatum HOM05D006819 ORTHO05D008763 1.1e-20 106.3 109 52.3
FAN02G4037 Fragaria x ananassa HOM05D006819 ORTHO05D008763 4.7e-14 84.3 57 66.7
HPP92_002305 Vanilla planifolia HOM05D008254 ORTHO05D010423 4.8e-11 74.3 227 27.3
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 1.4e-10 72.8 187 26.2
Sc19g0004680 Simmondsia chinensis HOM05D007340 ORTHO05D008979 2.4e-10 72.0 223 24.7
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 9.1e-10 70.1 244 25.4
QL04p067861 Quercus lobata HOM05D005764 ORTHO05D006600 1.2e-09 69.7 263 24.3
THA.LOC104817005 Tarenaya hassleriana HOM05D000104 ORTHO05D009920 1.2e-09 69.7 219 26.5
Prupe.2G122500 Prunus persica HOM05D000104 ORTHO05D009920 2.0e-09 68.9 230 26.1
SGA_v2.0_scaffold60G20860 Striga asiatica HOM05D000104 ORTHO05D009920 4.5e-09 67.8 227 24.7
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 5.9e-09 67.4 126 30.2
Solyc03g116540.1 Solanum lycopersicum HOM05D000424 ORTHO05D000355 5.9e-09 67.4 224 25.4
PGSC0003DMG400000611 Solanum tuberosum HOM05D000424 ORTHO05D000355 5.9e-09 67.4 224 24.6
AUR62018101 Chenopodium quinoa HOM05D006569 ORTHO05D007515 1.0e-08 66.6 247 25.5
Sabra05G0084800 Salix brachista HOM05D006556 ORTHO05D008146 1.0e-08 66.6 187 29.4
DCAR_014305 Daucus carota HOM05D000534 ORTHO05D008146 1.3e-08 66.2 187 26.2
PSO170G0141 Papaver somniferum HOM05D000424 ORTHO05D000355 1.7e-08 65.9 224 24.6
Sabra04G0077900 Salix brachista HOM05D000424 ORTHO05D000355 1.7e-08 65.9 223 25.1
Potri.005G102400 Populus trichocarpa HOM05D006556 ORTHO05D008146 3.8e-08 64.7 187 28.3
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 6.5e-08 63.9 237 22.4
Sopen03g035440 Solanum pennellii HOM05D000424 ORTHO05D000355 6.5e-08 63.9 224 24.1
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 8.5e-08 63.5 237 23.2
Hma1.2p1_0631F.1_g192390 Hydrangea macrophylla HOM05D006556 ORTHO05D008146 8.5e-08 63.5 187 26.2
Lalb_Chr03g0040111 Lupinus albus HOM05D000104 ORTHO05D009920 8.5e-08 63.5 175 24.6
Potri.004G102700 Populus trichocarpa HOM05D000424 ORTHO05D000355 8.5e-08 63.5 252 24.6
Cpa.g.sc211.34 Carica papaya HOM05D005764 ORTHO05D006600 1.1e-07 63.2 247 24.7
PSO339G1228 Papaver somniferum HOM05D007172 ORTHO05D009267 1.5e-07 62.8 180 25.0
arahy.Tifrunner.gnm1.ann1.H4NKJU Arachis hypogaea HOM05D000104 ORTHO05D009920 1.9e-07 62.4 244 23.4
PGSC0003DMG400008266 Solanum tuberosum HOM05D007675 ORTHO05D009699 1.9e-07 62.4 277 22.4
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 3.2e-07 61.6 244 23.0
CDE02G0959 Ceratophyllum demersum HOM05D007402 ORTHO05D003673 3.2e-07 61.6 121 28.1
Eucgr.C03952 Eucalyptus grandis HOM05D007340 ORTHO05D008979 3.2e-07 61.6 225 22.2
arahy.Tifrunner.gnm1.ann1.UTK222 Arachis hypogaea HOM05D000104 ORTHO05D009920 4.2e-07 61.2 232 24.1
Manes.08G089400 Manihot esculenta HOM05D000104 ORTHO05D009920 4.2e-07 61.2 197 26.9
VMungo1309G1576 Vigna mungo HOM05D000104 ORTHO05D009920 4.2e-07 61.2 170 25.9
arahy.Tifrunner.gnm1.ann1.JWX42Q Arachis hypogaea HOM05D000104 ORTHO05D009920 7.2e-07 60.5 232 24.1
PSO675G3831 Papaver somniferum HOM05D003056 ORTHO05D003422 7.2e-07 60.5 264 25.0
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 9.4e-07 60.1 232 23.3
PSO541G6324 Papaver somniferum HOM05D003056 ORTHO05D003422 9.4e-07 60.1 176 28.4
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 9.4e-07 60.1 189 26.5
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 1.2e-06 59.7 232 23.3
TAR383G0964 Trochodendron aralioides HOM05D000424 ORTHO05D000355 1.2e-06 59.7 226 24.3
AL8G36470 Arabidopsis lyrata HOM05D007212 ORTHO05D009094 2.1e-06 58.9 183 26.8
Oeu003964.1 Olea europaea HOM05D006556 ORTHO05D008146 2.1e-06 58.9 227 24.2
Phvul.009G206300 Phaseolus vulgaris HOM05D000104 ORTHO05D009920 2.1e-06 58.9 170 25.3
COL.COLO4_21653 Corchorus olitorius HOM05D000162 ORTHO05D000090 2.7e-06 58.5 195 26.7
Eucgr.C04132 Eucalyptus grandis HOM05D007340 ORTHO05D008979 2.7e-06 58.5 225 21.3
Thecc.01G387700 Theobroma cacao HOM05D000104 ORTHO05D009920 2.7e-06 58.5 193 25.9
TPR.G11140 Trifolium pratense HOM05D006858 ORTHO05D008767 2.7e-06 58.5 199 24.6
Carub.0006s1725 Capsella rubella HOM05D007340 ORTHO05D008979 3.6e-06 58.2 220 25.0
Glyma.12G191600 Glycine max HOM05D000104 ORTHO05D009920 3.6e-06 58.2 175 24.6
Psat3g158640 Pisum sativum HOM05D000104 ORTHO05D009920 3.6e-06 58.2 166 25.3
CiPaw.07G116900 Carya illinoinensis HOM05D000424 ORTHO05D002854 4.7e-06 57.8 215 24.7
Migut.F00552 Erythranthe guttata HOM05D000104 ORTHO05D009920 4.7e-06 57.8 191 24.1
Sc10g0003480 Simmondsia chinensis HOM05D006569 ORTHO05D007515 4.7e-06 57.8 201 24.9
Aqoxy7G02204 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 6.1e-06 57.4 225 23.6
CSS0042104 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 6.1e-06 57.4 265 22.6
SalBow4G0419 Salvia bowleyana HOM05D007455 ORTHO05D009431 6.1e-06 57.4 206 22.3
TAR629G2305 Trochodendron aralioides HOM05D000104 ORTHO05D009920 6.1e-06 57.4 236 22.9
AT5G59900 Arabidopsis thaliana HOM05D007212 ORTHO05D009094 8.0e-06 57.0 182 24.7
CAN.G407.100 Capsicum annuum HOM05D000424 ORTHO05D000355 8.0e-06 57.0 242 24.0
AUR62011540 Chenopodium quinoa HOM05D000424 ORTHO05D000355 8.0e-06 57.0 235 23.8
Haze_02747 Corylus avellana HOM05D000104 ORTHO05D009920 8.0e-06 57.0 199 25.1
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 8.0e-06 57.0 152 28.3
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 8.0e-06 57.0 198 25.3


User provided reference genes

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