Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 5.5e-184 647.5 330 100.0
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 2.6e-178 628.6 336 96.4
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 1.5e-173 612.8 329 94.5
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 1.5e-160 569.7 330 87.6
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.7e-156 556.2 330 85.8
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.2e-154 550.1 330 85.2
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 1.8e-150 536.2 323 84.2
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 1.2e-122 443.7 325 68.6
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.4e-115 420.2 325 66.8
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.0e-113 414.1 333 63.4
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 4.8e-111 405.2 327 64.8
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 6.2e-111 404.8 328 62.8
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 5.3e-110 401.7 327 63.0
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 3.4e-109 399.1 327 63.6
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 5.8e-109 398.3 325 63.7
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 9.9e-109 397.5 326 61.3
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 4.9e-108 395.2 321 63.9
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 1.4e-107 393.7 325 60.0
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 1.4e-107 393.7 326 61.0
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 2.4e-107 392.9 329 63.2
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 3.2e-107 392.5 330 61.8
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 7.1e-107 391.3 324 60.8
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 2.3e-105 386.3 325 62.5
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 3.9e-105 385.6 255 72.9
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 3.3e-104 382.5 325 60.3
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 5.6e-104 381.7 333 61.6
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 2.1e-103 379.8 299 65.2
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 4.8e-103 378.6 334 59.9
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 6.2e-103 378.3 328 61.9
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.1e-102 377.5 324 63.6
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 1.1e-102 377.5 291 67.7
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 1.8e-102 376.7 333 60.4
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 9.0e-102 374.4 301 61.1
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.5e-101 373.6 317 63.1
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.5e-101 373.6 323 60.4
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 2.0e-101 373.2 334 59.6
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.0e-101 373.2 326 60.4
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.6e-101 372.9 334 59.0
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 5.8e-101 371.7 317 62.8
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 7.6e-101 371.3 323 59.8
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.0e-100 370.9 317 62.8
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 3.8e-100 369.0 249 72.3
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 1.1e-99 367.5 322 57.5
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 4.2e-99 365.5 339 59.6
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 5.5e-99 365.2 326 59.8
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 1.6e-98 363.6 328 57.6
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.7e-98 362.8 321 60.4
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 4.6e-98 362.1 306 61.1
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 6.0e-98 361.7 321 59.8
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 2.3e-97 359.8 310 60.3
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 5.1e-97 358.6 289 64.4
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 5.1e-97 358.6 289 64.4
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 6.7e-97 358.2 328 55.5
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 1.5e-96 357.1 325 56.6
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 1.9e-96 356.7 328 55.2
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 1.9e-96 356.7 324 57.1
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 2.5e-96 356.3 303 59.1
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 3.3e-96 355.9 320 58.8
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 4.3e-96 355.5 291 64.3
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.7e-96 355.1 333 57.4
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 5.7e-96 355.1 320 58.4
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 7.4e-96 354.8 328 58.8
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 1.6e-95 353.6 297 61.6
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 1.6e-95 353.6 298 60.7
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 2.1e-95 353.2 303 59.1
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 4.8e-95 352.1 305 59.3
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 6.2e-95 351.7 325 58.8
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 1.4e-94 350.5 327 56.3
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 3.1e-94 349.4 325 55.7
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 3.1e-94 349.4 333 57.7
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 5.3e-94 348.6 301 58.8
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 6.9e-94 348.2 329 55.9
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 2.0e-93 346.7 325 55.4
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 2.0e-93 346.7 325 55.4
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 2.6e-93 346.3 326 56.4
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 4.5e-93 345.5 326 56.1
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 4.5e-93 345.5 327 54.4
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 5.8e-93 345.1 326 55.5
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 1.0e-92 344.4 288 60.4
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 1.3e-92 344.0 327 55.7
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 2.9e-92 342.8 327 55.7
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 2.9e-92 342.8 329 52.3
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 3.8e-92 342.4 328 54.3
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 6.5e-92 341.7 326 55.5
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 1.2e-90 337.4 322 54.3
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.7e-90 336.3 323 55.1
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 4.6e-90 335.5 327 51.7
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 1.0e-89 334.3 327 53.8
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 1.3e-89 334.0 256 66.0
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.3e-89 334.0 326 52.8
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 2.3e-89 333.2 302 53.3
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 3.0e-89 332.8 329 53.8
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 3.0e-89 332.8 327 54.7
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 3.3e-88 329.3 326 51.2
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.6e-87 327.0 326 51.2
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 2.2e-87 326.6 331 52.0
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 2.8e-87 326.2 325 51.4
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 3.7e-87 325.9 330 53.3
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.8e-87 325.5 326 50.9
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 6.9e-86 321.6 326 50.3
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.2e-85 320.9 321 50.2
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 1.5e-85 320.5 321 50.2
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 2.6e-85 319.7 292 57.9
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.6e-85 319.7 321 50.5
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 7.7e-85 318.2 328 51.8
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 7.7e-85 318.2 352 49.4
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.0e-84 317.8 321 50.2
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 1.7e-84 317.0 254 62.6
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 1.7e-84 317.0 274 60.6
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 1.1e-83 314.3 344 51.5
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 6.1e-82 308.5 344 47.4
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.4e-81 307.4 264 58.3
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.8e-81 307.0 320 50.3
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 8.8e-81 304.7 292 51.0
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 8.8e-81 304.7 328 48.8
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.1e-80 304.3 304 53.9
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.5e-80 303.9 329 48.3
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 2.0e-80 303.5 322 50.6
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.5e-80 303.1 307 50.5
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 2.5e-80 303.1 325 51.1
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.3e-80 302.4 329 48.6
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 5.7e-80 302.0 329 49.8
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 7.4e-80 301.6 285 54.0
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.7e-79 300.4 319 50.2
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 2.8e-79 299.7 331 51.4
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 6.3e-79 298.5 328 50.0
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 6.3e-79 298.5 297 53.9
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 1.4e-78 297.4 285 51.9
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 1.8e-78 297.0 335 47.5
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 1.8e-78 297.0 291 51.5
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 1.2e-77 294.3 322 48.8
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 5.9e-77 292.0 323 47.7
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 7.7e-77 291.6 325 47.1
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 1.7e-76 290.4 305 50.8
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 3.8e-76 289.3 330 45.8
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 5.0e-76 288.9 326 46.3
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 6.5e-76 288.5 256 57.8
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 4.2e-75 285.8 322 50.0
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 9.4e-75 284.6 327 44.0
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 1.4e-73 280.8 267 56.6
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 2.3e-73 280.0 289 52.9
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 3.9e-73 279.3 326 45.7
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 5.1e-73 278.9 273 49.8
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 8.8e-73 278.1 303 47.2
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 2.6e-72 276.6 325 45.2
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 1.3e-71 274.2 324 44.8
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 6.3e-71 271.9 285 49.8
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 1.8e-70 270.4 324 44.1
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 2.5e-67 260.0 276 47.5
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 1.2e-66 257.7 290 46.2
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 6.1e-66 255.4 157 77.7
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 3.0e-65 253.1 278 50.0
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 5.7e-64 248.8 237 53.2
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.0e-57 228.0 159 65.4
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 1.4e-57 227.6 225 52.9
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.8e-55 219.9 154 69.5
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.8e-54 217.2 214 51.4
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 9.1e-54 214.9 231 52.8
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.5e-53 213.0 149 71.8
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 5.0e-52 209.1 286 44.8
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 7.2e-51 205.3 223 52.5
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 6.8e-49 198.7 238 45.0
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 7.7e-45 185.3 237 43.0
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 1.2e-42 177.9 210 49.0
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 8.3e-39 165.2 234 41.5
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 1.0e-36 158.3 256 37.1
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 6.6e-36 155.6 106 73.6
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 2.9e-31 140.2 89 73.0
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 2.3e-28 130.6 83 81.9
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 7.5e-24 115.5 88 62.5
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.7e-23 113.2 74 70.3
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 3.2e-22 110.2 84 66.7
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 2.1e-21 107.5 84 59.5
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 3.0e-20 103.6 123 39.8
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 2.5e-11 73.9 56 64.3


User provided reference genes

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