Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 1.3e-266 922.5 471 100.0
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 2.0e-264 915.2 471 99.2
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 2.7e-232 808.5 477 85.7
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 9.2e-225 783.5 471 84.5
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 6.8e-220 767.3 468 81.4
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 2.6e-219 765.4 469 83.4
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 3.3e-158 562.4 487 56.9
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 5.7e-158 561.6 470 59.4
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 2.9e-154 549.3 472 59.3
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 1.9e-153 546.6 474 57.0
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 3.9e-151 538.9 451 59.4
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 8.2e-149 531.2 471 57.7
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 7.0e-148 528.1 470 56.8
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 1.2e-147 527.3 468 55.3
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 4.5e-147 525.4 476 55.9
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 7.7e-147 524.6 470 55.5
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 1.7e-146 523.5 472 54.9
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 2.9e-146 522.7 468 54.7
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 8.5e-146 521.2 468 55.1
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 1.9e-145 520.0 468 55.3
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 4.2e-145 518.8 477 54.9
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 1.6e-144 516.9 477 57.0
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.0e-143 512.7 475 56.0
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 3.9e-143 512.3 472 58.5
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 3.9e-143 512.3 288 93.4
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 1.5e-142 510.4 470 57.2
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 1.7e-141 506.9 476 56.9
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 4.8e-141 505.4 473 53.5
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 4.8e-141 505.4 472 57.8
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 8.2e-141 504.6 474 56.1
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.4e-140 503.8 410 58.5
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 1.8e-140 503.4 455 55.6
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 4.1e-140 502.3 473 54.3
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 7.0e-140 501.5 471 52.7
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 2.6e-139 499.6 470 57.0
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 4.5e-139 498.8 488 53.3
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 5.9e-139 498.4 487 51.7
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 5.9e-139 498.4 470 53.6
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 3.8e-138 495.7 446 57.4
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 1.6e-136 490.3 476 52.5
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 2.1e-136 490.0 474 52.1
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 8.8e-135 484.6 473 52.4
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 2.6e-134 483.0 470 52.3
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 3.3e-134 482.6 473 55.2
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 1.1e-132 477.6 478 52.9
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 1.4e-132 477.2 488 50.8
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 1.8e-132 476.9 475 53.3
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 3.1e-132 476.1 468 52.6
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 4.1e-132 475.7 472 53.0
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 5.3e-132 475.3 473 53.7
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 5.9e-131 471.9 473 51.4
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 7.7e-131 471.5 480 51.2
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 2.9e-130 469.5 476 51.3
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 1.2e-128 464.2 472 53.0
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 1.6e-128 463.8 475 51.4
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.1e-128 461.8 473 53.1
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.5e-126 457.2 473 51.6
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 1.5e-126 457.2 474 51.5
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 2.6e-126 456.4 474 50.0
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 9.8e-126 454.5 476 52.1
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 1.3e-125 454.1 472 50.2
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 4.8e-125 452.2 478 51.9
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 6.3e-125 451.8 473 52.9
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 1.1e-124 451.1 469 50.5
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 2.4e-124 449.9 472 51.9
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 5.4e-124 448.7 405 55.1
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 7.7e-123 444.9 585 44.4
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 2.5e-121 439.9 472 50.0
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 2.0e-118 430.3 473 47.4
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 5.7e-118 428.7 473 51.8
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 7.5e-118 428.3 465 49.9
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 2.8e-117 426.4 479 49.1
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 3.1e-116 422.9 472 49.8
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 4.1e-116 422.5 476 50.2
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 7.0e-116 421.8 475 48.8
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 1.0e-114 417.9 472 49.2
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 1.3e-114 417.5 461 49.2
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 3.8e-114 416.0 472 48.9
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 6.6e-114 415.2 472 48.1
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 8.6e-114 414.8 465 49.2
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 4.3e-113 412.5 501 46.9
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 1.0e-111 407.9 472 47.9
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 1.8e-111 407.1 480 46.9
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 5.2e-111 405.6 409 51.3
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 5.4e-108 395.6 498 46.2
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 4.7e-104 382.5 473 44.2
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 2.0e-102 377.1 468 44.2
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 6.4e-101 372.1 440 48.4
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 1.1e-100 371.3 310 61.0
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 3.5e-99 366.3 440 48.4
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 1.0e-98 364.8 316 59.2
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 3.4e-94 349.7 432 41.7
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 6.2e-88 328.9 402 43.5
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 8.4e-77 292.0 373 39.1
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.3e-76 288.5 325 44.6
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 6.0e-75 285.8 330 45.2
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 8.7e-74 282.0 473 38.9
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 4.8e-72 276.2 288 48.3
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 3.8e-69 266.5 308 44.5
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 1.0e-66 258.5 474 34.2
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 5.6e-65 252.7 287 48.1
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 8.4e-61 238.8 183 60.7
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.8e-56 223.0 347 37.2
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 4.5e-54 216.5 142 71.8
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 1.9e-49 201.1 218 48.2
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.4e-42 178.3 218 45.4
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.1e-39 167.2 340 33.8
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 1.9e-36 157.9 248 37.9
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.3e-34 151.0 221 37.6
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.0e-33 147.9 283 33.6
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 1.8e-31 141.4 173 42.2
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.8e-31 141.4 196 37.2
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.1e-31 140.6 233 35.2
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 4.1e-31 140.2 476 27.9
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 7.7e-30 136.0 166 43.4
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 2.1e-27 127.9 166 42.8
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.4e-26 125.2 230 35.7
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.1e-25 122.1 156 44.2
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.5e-25 121.7 270 31.9
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 9.7e-25 119.0 148 43.9
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.3e-24 118.6 236 31.4
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.7e-21 108.2 134 41.8
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.5e-21 106.3 130 40.8
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.2e-20 104.0 214 34.1
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 2.1e-19 101.3 80 62.5
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 1.8e-18 98.2 99 50.5
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 3.0e-18 97.4 230 29.6
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 7.5e-17 92.8 144 47.2
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 2.0e-14 84.7 216 27.8
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.5e-14 83.6 87 43.7
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.7e-13 81.6 87 42.5
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 5.0e-13 80.1 76 52.6
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.5e-12 78.6 87 41.4
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 1.5e-12 78.6 75 56.0
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 2.5e-12 77.8 143 44.1
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.4e-12 75.9 170 32.4
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.7e-11 74.3 89 40.4
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.0e-11 72.8 87 43.7
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 2.3e-10 71.2 189 30.7
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 2.3e-10 71.2 50 66.0
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 1.2e-09 68.9 62 51.6
SMO009G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.7e-09 66.6 212 29.7
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.3e-08 65.5 87 39.1
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 2.4e-07 61.2 47 59.6
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 3.1e-07 60.8 62 48.4
CSS0007257 Camellia sinensis var. sinensis HOM05D039489 ORTHO05D005220 2.7e-06 57.8 50 60.0
CSS0033804 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.5e-06 57.4 35 68.6
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.9e-06 56.6 52 53.8
CSS0018695 Camellia sinensis var. sinensis HOM05D039489 ORTHO05D005220 7.7e-06 56.2 50 60.0


User provided reference genes

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