Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g034610 Solanum pennellii HOM05D007878 ORTHO05D010022 1.4e-250 869.4 519 100.0
Solyc03g115620.2 Solanum lycopersicum HOM05D007878 ORTHO05D010022 3.7e-235 818.1 519 94.4
PGSC0003DMG400024662 Solanum tuberosum HOM05D007878 ORTHO05D010022 6.1e-222 774.2 526 89.0
CAN.G479.49 Capsicum annuum HOM05D007878 ORTHO05D010022 1.4e-186 656.8 541 73.9
Nitab4.5_0002756g0040 Nicotiana tabacum HOM05D007878 ORTHO05D010022 2.3e-152 543.1 551 68.6
Peaxi162Scf00274g00029 Petunia axillaris HOM05D007878 ORTHO05D010022 5.5e-146 521.9 567 63.8
Nitab4.5_0001211g0090 Nicotiana tabacum HOM05D007878 ORTHO05D010022 1.2e-145 520.8 513 70.2
Cc04_g14870 Coffea canephora HOM05D007878 ORTHO05D010022 9.5e-98 361.7 550 47.3
Actinidia04859 Actinidia chinensis HOM05D007878 ORTHO05D010022 8.3e-86 322.0 574 42.3
Duzib084G0698 Durio zibethinus HOM05D007878 ORTHO05D010022 8.9e-80 302.0 592 37.7
Oeu031812.2 Olea europaea HOM05D007878 ORTHO05D010022 1.4e-77 294.7 548 42.2
Actinidia09234 Actinidia chinensis HOM05D007878 ORTHO05D010022 5.4e-77 292.7 575 40.0
Dinv38757 Davidia involucrata HOM05D007878 ORTHO05D010022 3.5e-76 290.0 591 43.8
FAN13G2185 Fragaria x ananassa HOM05D007878 ORTHO05D010022 1.7e-75 287.7 609 36.9
RcHm_v2.0_Chr7g0182231 Rosa chinensis HOM05D007878 ORTHO05D010022 4.3e-74 283.1 608 41.1
Cfa019282 Carpinus fangiana HOM05D007878 ORTHO05D010022 9.6e-74 282.0 535 39.3
Potri.015G061500 Populus trichocarpa HOM05D007878 ORTHO05D010022 8.1e-73 278.9 563 37.5
FAN08G0929 Fragaria x ananassa HOM05D007878 ORTHO05D010022 3.1e-72 276.9 574 37.5
Thecc.03G095300 Theobroma cacao HOM05D007878 ORTHO05D010022 9.9e-71 271.9 595 40.5
PGR083G0831 Punica granatum HOM05D007878 ORTHO05D010022 6.4e-70 269.2 592 42.7
DCAR_016585 Daucus carota HOM05D007878 ORTHO05D010022 1.4e-69 268.1 565 38.2
Nn4g23313 Nelumbo nucifera HOM05D007878 ORTHO05D010022 1.9e-69 267.7 596 37.9
Prupe.5G199300 Prunus persica HOM05D007878 ORTHO05D010022 2.1e-68 264.2 615 35.9
Gohir.A03G068300 Gossypium hirsutum HOM05D007878 ORTHO05D010022 2.7e-68 263.8 540 37.2
FAN18G1316 Fragaria x ananassa HOM05D007878 ORTHO05D010022 2.3e-67 260.8 609 35.5
Manes.14G082500 Manihot esculenta HOM05D007878 ORTHO05D010022 5.1e-67 259.6 585 40.9
Oeu046990.1 Olea europaea HOM05D007878 ORTHO05D010022 8.7e-67 258.8 522 43.1
FvH4_5g14430 Fragaria vesca HOM05D007878 ORTHO05D010022 7.3e-66 255.8 609 37.4
Ciclev10024608m.g Citrus clementina HOM05D007878 ORTHO05D010022 9.6e-66 255.4 538 37.9
Gohir.D03G094900 Gossypium hirsutum HOM05D007878 ORTHO05D010022 3.6e-65 253.4 540 36.7
Atru.chr9.783 Acer truncatum HOM05D007878 ORTHO05D010022 3.1e-64 250.4 568 36.3
Aqoxy3G03537 Aquilegia oxysepala HOM05D007878 ORTHO05D010022 3.1e-64 250.4 608 36.3
Glyma.17G103300 Glycine max HOM05D007878 ORTHO05D010022 6.9e-64 249.2 535 41.7
Manes.06G088500 Manihot esculenta HOM05D007878 ORTHO05D010022 1.7e-62 244.6 587 38.2
TAR374G1173 Trochodendron aralioides HOM05D007878 ORTHO05D010022 1.7e-62 244.6 603 35.5
COL.COLO4_38427 Corchorus olitorius HOM05D007878 ORTHO05D010022 2.7e-60 237.3 575 38.1
CiPaw.11G048800 Carya illinoinensis HOM05D007878 ORTHO05D010022 1.3e-59 235.0 594 34.3
Migut.I00229 Erythranthe guttata HOM05D007878 ORTHO05D010022 5.1e-59 233.0 518 36.9
CiPaw.11G048500 Carya illinoinensis HOM05D007878 ORTHO05D010022 6.7e-59 232.6 586 34.6
Oeu047269.3 Olea europaea HOM05D007878 ORTHO05D010022 4.3e-58 229.9 511 39.5
Oeu052466.1 Olea europaea HOM05D007878 ORTHO05D010022 5.6e-58 229.6 560 41.1
TWI60G1109 Tripterygium wilfordii HOM05D007878 ORTHO05D010022 5.6e-58 229.6 586 35.5
Oeu052465.1 Olea europaea HOM05D007878 ORTHO05D010022 7.4e-58 229.2 560 41.1
Phvul.003G187300 Phaseolus vulgaris HOM05D007878 ORTHO05D010022 1.6e-57 228.0 536 36.4
Gorai.003G099100 Gossypium raimondii HOM05D007878 ORTHO05D010022 2.6e-55 220.7 504 34.9
CANSAT80G1712 Cannabis sativa HOM05D007878 ORTHO05D010022 3.4e-55 220.3 549 35.7
Lj4g0012809 Lotus japonicus HOM05D007878 ORTHO05D010022 5.8e-55 219.5 525 37.0
Medtr4g109150 Medicago truncatula HOM05D007878 ORTHO05D010022 4.9e-54 216.5 541 36.4
MD14G1206000 Malus domestica HOM05D007878 ORTHO05D010022 1.9e-53 214.5 579 34.0
MBI16_g14990_MAGBIO Magnolia biondii HOM05D007878 ORTHO05D010022 2.3e-51 207.6 583 32.9
ClCG06G015920 Citrullus lanatus HOM05D007878 ORTHO05D010022 6.9e-48 196.1 555 34.8
arahy.Tifrunner.gnm1.ann1.3W98EY Arachis hypogaea HOM05D007878 ORTHO05D010022 5.8e-47 193.0 531 33.3
Ca_21797_v3 Cicer arietinum L. HOM05D007878 ORTHO05D010022 7.6e-47 192.6 505 34.3
PSO063G3897 Papaver somniferum HOM05D007878 ORTHO05D010022 1.3e-43 181.8 586 30.4
Cpa.g.sc13.307 Carica papaya HOM05D007878 ORTHO05D010022 1.8e-43 181.4 497 33.2
Nn3g17364 Nelumbo nucifera HOM05D007878 ORTHO05D010022 2.3e-43 181.0 481 32.8
MELO3C017199.2 Cucumis melo HOM05D007878 ORTHO05D010022 8.7e-43 179.1 556 32.2
GSVIVG01007952001 Vitis vinifera HOM05D007878 ORTHO05D010022 1.3e-41 175.3 479 38.2
QL10p018347 Quercus lobata HOM05D007878 ORTHO05D010022 6.3e-41 172.9 445 36.2
CsaV3_1G002630 Cucumis sativus L. HOM05D007878 ORTHO05D010022 5.3e-40 169.9 554 31.9
MD06G1198500 Malus domestica HOM05D007878 ORTHO05D010022 3.4e-39 167.2 617 29.3
Sed0013205 Sechium edule HOM05D007878 ORTHO05D010022 3.4e-39 167.2 579 32.3
ECA246G4297 Erigeron canadensis HOM05D007878 ORTHO05D010022 5.9e-39 166.4 505 31.7
TPR.G1999 Trifolium pratense HOM05D007878 ORTHO05D010022 5.9e-39 166.4 541 35.9
Haze_07666 Corylus avellana HOM05D007878 ORTHO05D010022 9.3e-37 159.1 487 34.7
HanXRQChr05g0157141 Helianthus annuus HOM05D007878 ORTHO05D010022 1.0e-35 155.6 479 30.7
ATR0730G174 Amborella trichopoda HOM05D007878 ORTHO05D010022 2.5e-34 151.0 297 38.7
arahy.Tifrunner.gnm1.ann1.QT4JJ4 Arachis hypogaea HOM05D007878 ORTHO05D010022 8.2e-33 146.0 464 30.8
Psat4g049000 Pisum sativum HOM05D007878 ORTHO05D010022 1.4e-32 145.2 528 30.3
Eucgr.B00555 Eucalyptus grandis HOM05D007878 ORTHO05D010022 1.5e-31 141.7 487 33.9
CSS0029238 Camellia sinensis var. sinensis HOM05D000957 ORTHO05D000754 8.5e-30 136.0 471 29.9
Lsat_1_v5_gn_5_21161 Lactuca sativa HOM05D007878 ORTHO05D010022 4.4e-26 123.6 269 39.8
DCAR_026030 Daucus carota HOM05D000094 ORTHO05D003883 2.1e-20 104.8 725 24.0
MSTRG.22991 Avicennia marina HOM05D007878 ORTHO05D010022 8.8e-19 99.4 135 53.3
Atru.chr9.308 Acer truncatum HOM05D007878 ORTHO05D010022 1.7e-17 95.1 207 33.8
DCAR_021514 Daucus carota HOM05D007878 ORTHO05D010022 1.1e-16 92.4 313 31.6
SEGI_16968 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 2.7e-12 77.8 633 25.0
arahy.Tifrunner.gnm1.ann1.H3BYSM Arachis hypogaea HOM05D007878 ORTHO05D010022 8.0e-12 76.3 132 43.9
arahy.Tifrunner.gnm1.ann1.0CJ0KN Arachis hypogaea HOM05D007878 ORTHO05D010022 5.2e-11 73.6 148 38.5
Aa31LG3G11780 Aethionema arabicum HOM05D001827 ORTHO05D001790 1.3e-09 68.9 599 23.7
BraA09t41752Z Brassica rapa HOM05D001827 ORTHO05D001790 2.8e-09 67.8 335 25.1
Glyma.15G120700 Glycine max HOM05D001827 ORTHO05D001790 6.3e-09 66.6 306 27.1
BcaNung05493 Brassica carinata HOM05D001827 ORTHO05D001790 1.1e-08 65.9 342 25.1
QL05p067335 Quercus lobata HOM05D001827 ORTHO05D001790 1.1e-08 65.9 554 22.9
Aa31LG5G11980 Aethionema arabicum HOM05D001812 ORTHO05D001874 1.4e-08 65.5 567 22.2
SEGI_39497 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 1.4e-08 65.5 584 26.7
Lalb_Chr07g0176921 Lupinus albus HOM05D001827 ORTHO05D001790 1.8e-08 65.1 555 22.5
Rhsim02G0090400 Rhododendron simsii HOM05D001827 ORTHO05D001790 1.8e-08 65.1 579 21.2
Glyma.09G015000 Glycine max HOM05D001827 ORTHO05D001790 3.1e-08 64.3 313 26.2
A09p64060 Brassica napus HOM05D001827 ORTHO05D001790 4.1e-08 63.9 336 24.7
MBI14_g13533_MAGBIO Magnolia biondii HOM05D001827 ORTHO05D001790 4.1e-08 63.9 478 25.5
HanXRQChr16g0515721 Helianthus annuus HOM05D001827 ORTHO05D001790 7.0e-08 63.2 278 28.8
SGA_v2.0_scaffold42G15974 Striga asiatica HOM05D001827 ORTHO05D001790 7.0e-08 63.2 419 22.9
Zm00001eb400500 Zea mays HOM05D007878 ORTHO05D010022 7.0e-08 63.2 266 25.9
Lj6g0015113 Lotus japonicus HOM05D001827 ORTHO05D001790 9.1e-08 62.8 405 21.2
C08p47640 Brassica napus HOM05D001827 ORTHO05D001790 1.6e-07 62.0 335 24.2
BolC8t52305H Brassica oleracea HOM05D001827 ORTHO05D001790 2.7e-07 61.2 335 24.2
Haze_07028 Corylus avellana HOM05D001827 ORTHO05D001790 2.7e-07 61.2 545 22.2
Aa31LG2G12390 Aethionema arabicum HOM05D001827 ORTHO05D001790 3.5e-07 60.8 322 24.5
AT1G12150 Arabidopsis thaliana HOM05D001827 ORTHO05D001790 3.5e-07 60.8 354 24.9
Ca_00766_v3 Cicer arietinum L. HOM05D001827 ORTHO05D001790 3.5e-07 60.8 323 28.2
Cfa016913 Carpinus fangiana HOM05D001827 ORTHO05D001790 5.9e-07 60.1 406 22.9
CsaV3_1G015450 Cucumis sativus L. HOM05D001827 ORTHO05D001790 5.9e-07 60.1 542 27.5
SEGI_06346 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 5.9e-07 60.1 501 25.5
Gorai.002G101700 Gossypium raimondii HOM05D001827 ORTHO05D001790 7.7e-07 59.7 320 24.1
Zm00001eb133280 Zea mays HOM05D001827 ORTHO05D001790 7.7e-07 59.7 304 25.7
COL.COLO4_09854 Corchorus olitorius HOM05D001827 ORTHO05D001790 1.0e-06 59.3 318 23.3
ECA234G3071 Erigeron canadensis HOM05D001827 ORTHO05D001790 1.0e-06 59.3 214 29.9
Lsat_1_v5_gn_7_12861 Lactuca sativa HOM05D001827 ORTHO05D001790 1.0e-06 59.3 308 28.6
TWI39G0045 Tripterygium wilfordii HOM05D001827 ORTHO05D001790 1.0e-06 59.3 413 22.0
ClCG10G004390 Citrullus lanatus HOM05D001827 ORTHO05D001790 1.3e-06 58.9 375 21.9
C08p15260 Brassica napus HOM05D001827 ORTHO05D001790 1.7e-06 58.5 336 23.2
BraA08t35216Z Brassica rapa HOM05D001827 ORTHO05D001790 1.7e-06 58.5 337 23.7
Migut.H01749 Erythranthe guttata HOM05D001827 ORTHO05D001790 1.7e-06 58.5 559 28.1
HPP92_003813 Vanilla planifolia HOM05D001827 ORTHO05D001790 1.7e-06 58.5 324 25.6
A08p32960 Brassica napus HOM05D001827 ORTHO05D001790 2.2e-06 58.2 337 22.8
BolC8t49155H Brassica oleracea HOM05D001827 ORTHO05D001790 2.2e-06 58.2 336 23.2
CSS0027094 Camellia sinensis var. sinensis HOM05D001827 ORTHO05D001790 2.9e-06 57.8 405 22.5
Gohir.D01G077200 Gossypium hirsutum HOM05D001827 ORTHO05D001790 2.9e-06 57.8 320 23.8
Lj6g0012256 Lotus japonicus HOM05D001827 ORTHO05D001790 2.9e-06 57.8 309 25.9
Os12g0271600 Oryza sativa ssp. japonica HOM05D001827 ORTHO05D001790 3.8e-06 57.4 227 26.4
Carub.0001s1184 Capsella rubella HOM05D001827 ORTHO05D001790 5.0e-06 57.0 322 23.6
AL1G23420 Arabidopsis lyrata HOM05D001827 ORTHO05D001790 6.5e-06 56.6 351 23.4
CSS0010892 Camellia sinensis var. sinensis HOM05D001827 ORTHO05D001790 6.5e-06 56.6 405 21.7
Duzib213G1002 Durio zibethinus HOM05D001827 ORTHO05D001790 6.5e-06 56.6 319 23.5
Actinidia11907 Actinidia chinensis HOM05D001827 ORTHO05D001790 8.5e-06 56.2 279 24.4
arahy.Tifrunner.gnm1.ann1.DFDN71 Arachis hypogaea HOM05D001827 ORTHO05D001790 8.5e-06 56.2 325 23.4


User provided reference genes

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