Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g034240 Solanum pennellii HOM05D008195 ORTHO05D000743 7.4e-211 736.9 356 100.0
Solyc03g115180.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 8.9e-188 660.2 401 82.8
Sopen03g034220 Solanum pennellii HOM05D008195 ORTHO05D000743 1.6e-88 330.5 427 45.9
PGSC0003DMG400024640 Solanum tuberosum HOM05D008195 ORTHO05D000743 7.7e-83 311.6 367 48.5
Solyc03g115160.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 5.0e-82 308.9 347 50.1
Peaxi162Scf00201g00235 Petunia axillaris HOM05D008195 ORTHO05D000743 5.7e-70 268.9 370 43.2
Nitab4.5_0007689g0050 Nicotiana tabacum HOM05D008195 ORTHO05D000743 6.2e-64 248.8 379 42.7
Nitab4.5_0001485g0150 Nicotiana tabacum HOM05D008195 ORTHO05D000743 4.0e-63 246.1 387 42.6
PGSC0003DMG400020472 Solanum tuberosum HOM05D008195 ORTHO05D000743 2.5e-57 226.9 407 36.6
Solyc06g066200.2 Solanum lycopersicum HOM05D008195 ORTHO05D000743 3.3e-57 226.5 405 38.3
PGSC0003DMG400041231 Solanum tuberosum HOM05D008195 ORTHO05D010950 2.1e-56 223.8 381 39.6
CAN.G111.39 Capsicum annuum HOM05D008195 ORTHO05D000743 3.1e-55 219.9 418 37.8
Sopen06g021820 Solanum pennellii HOM05D008195 ORTHO05D000743 4.0e-55 219.5 376 38.8
PGSC0003DMG400026134 Solanum tuberosum HOM05D008195 ORTHO05D000743 4.6e-51 206.1 403 34.0
PGSC0003DMG401020463 Solanum tuberosum HOM05D008195 ORTHO05D010950 1.5e-46 191.0 370 37.0
CAN.G479.2 Capsicum annuum HOM05D008195 ORTHO05D010950 1.0e-42 178.3 250 43.2
Sopen06g024610 Solanum pennellii HOM05D008195 ORTHO05D000743 6.2e-40 169.1 184 48.9
CAN.G479.1 Capsicum annuum HOM05D008195 ORTHO05D010950 2.4e-39 167.2 267 41.6
Solyc06g066140.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 9.9e-38 161.8 367 32.4
Sopen06g021660 Solanum pennellii HOM05D000006 ORTHO05D000001 2.9e-37 160.2 227 41.0
Solyc06g066360.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 1.5e-33 147.9 178 46.6
CAN.G1228.30 Capsicum annuum HOM05D008195 ORTHO05D010950 5.6e-33 146.0 253 39.1
PGSC0003DMG400040653 Solanum tuberosum HOM05D008195 ORTHO05D010950 4.9e-29 132.9 213 39.9
Dinv17406 Davidia involucrata HOM05D001093 ORTHO05D000743 1.9e-28 131.0 441 27.2
PGSC0003DMG400016782 Solanum tuberosum HOM05D008195 ORTHO05D010950 3.2e-28 130.2 177 41.2
CSS0005519 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 5.4e-28 129.4 418 27.8
PGSC0003DMG400035870 Solanum tuberosum HOM05D008195 ORTHO05D010950 3.5e-27 126.7 322 32.6
PGSC0003DMG400024542 Solanum tuberosum HOM05D008195 ORTHO05D010950 5.6e-25 119.4 65 87.7
Dinv22785 Davidia involucrata HOM05D001093 ORTHO05D000743 6.2e-24 115.9 195 36.9
Sopen06g024520 Solanum pennellii HOM05D008195 ORTHO05D010950 2.4e-23 114.0 242 37.6
SGA_v2.0_scaffold313G48311 Striga asiatica HOM05D001093 ORTHO05D000743 1.3e-21 108.2 199 34.2
Rhsim12G0151100 Rhododendron simsii HOM05D001093 ORTHO05D000743 1.4e-20 104.8 209 33.5
vmacro16499 Vaccinium macrocarpon HOM05D001093 ORTHO05D000743 1.4e-20 104.8 243 31.7
Lj5A103G64 Lonicera japonica HOM05D001093 ORTHO05D000743 4.2e-20 103.2 338 31.1
Oeu047262.2 Olea europaea HOM05D001093 ORTHO05D000743 9.3e-20 102.1 189 34.9
Actinidia16122 Actinidia chinensis HOM05D001093 ORTHO05D000743 2.1e-19 100.9 185 34.6
PGSC0003DMG400023177 Solanum tuberosum HOM05D008195 ORTHO05D010950 1.0e-18 98.6 176 40.3
Actinidia35035 Actinidia chinensis HOM05D001093 ORTHO05D000743 1.3e-18 98.2 218 33.0
PGSC0003DMG400016768 Solanum tuberosum HOM05D008195 ORTHO05D010950 1.1e-17 95.1 333 28.5
MSTRG.22985 Avicennia marina HOM05D001093 ORTHO05D000743 7.4e-17 92.4 214 32.2
SalBow5G5623 Salvia bowleyana HOM05D001093 ORTHO05D000743 1.6e-16 91.3 213 31.0
Rhsim08G0146400 Rhododendron simsii HOM05D001093 ORTHO05D000743 1.1e-15 88.6 262 30.2
PGSC0003DMG400037001 Solanum tuberosum HOM05D008195 ORTHO05D000743 2.4e-15 87.4 326 24.8
Nn3g17441 Nelumbo nucifera HOM05D001093 ORTHO05D000743 1.5e-14 84.7 204 29.9
Migut.I00329 Erythranthe guttata HOM05D001093 ORTHO05D000743 3.4e-14 83.6 309 25.2
CAN.G675.32 Capsicum annuum HOM05D008195 ORTHO05D010950 6.5e-13 79.3 112 42.0
TAR264G0006 Trochodendron aralioides HOM05D001093 ORTHO05D000743 2.1e-11 74.3 180 30.0
arahy.Tifrunner.gnm1.ann1.7R0RVH Arachis hypogaea HOM05D001093 ORTHO05D000743 2.7e-11 73.9 396 24.2
Cfa019304 Carpinus fangiana HOM05D001093 ORTHO05D000743 2.7e-11 73.9 388 25.5
Sopen01g006140 Solanum pennellii HOM05D001818 ORTHO05D001780 2.7e-11 73.9 107 35.5
Sc12g0006650 Simmondsia chinensis HOM05D001093 ORTHO05D000743 4.6e-11 73.2 169 32.0
PSO339G4557 Papaver somniferum HOM05D001093 ORTHO05D000743 6.0e-11 72.8 145 31.7
PSO801G0246 Papaver somniferum HOM05D001093 ORTHO05D000743 6.0e-11 72.8 145 31.7
TAR629G2812 Trochodendron aralioides HOM05D001093 ORTHO05D000743 7.9e-11 72.4 206 27.7
CAN.G479.4 Capsicum annuum HOM05D008195 ORTHO05D000743 1.0e-10 72.0 99 42.4
Lj1g0000797 Lotus japonicus HOM05D007909 ORTHO05D000743 1.3e-10 71.6 442 22.4
vmacro17606 Vaccinium macrocarpon HOM05D001093 ORTHO05D000743 5.1e-10 69.7 175 31.4
Solyc01g010500.3 Solanum lycopersicum HOM05D001818 ORTHO05D001780 6.7e-10 69.3 69 47.8
TAR629G0348 Trochodendron aralioides HOM05D001391 ORTHO05D000743 8.7e-10 68.9 204 28.4
MSTRG.4449 Avicennia marina HOM05D001093 ORTHO05D010605 2.5e-09 67.4 100 36.0
Ah.11g047850 Amaranthus hybridus HOM05D008195 ORTHO05D000743 4.3e-09 66.6 203 27.6
DCAR_030040 Daucus carota HOM05D001093 ORTHO05D000743 5.7e-09 66.2 155 30.3
THA.LOC104801226 Tarenaya hassleriana HOM05D007909 ORTHO05D000743 5.7e-09 66.2 380 23.2
arahy.Tifrunner.gnm1.ann1.ER6SHV Arachis hypogaea HOM05D008195 ORTHO05D000743 9.6e-09 65.5 402 23.6
Hund02591 Selenicereus undatus HOM05D001093 ORTHO05D000743 2.1e-08 64.3 142 31.0
Duzib084G0387 Durio zibethinus HOM05D001093 ORTHO05D000743 3.7e-08 63.5 179 30.2
CAN.G479.9 Capsicum annuum HOM05D008195 ORTHO05D010950 4.8e-08 63.2 100 41.0
Glyma.04G163100 Glycine max HOM05D007909 ORTHO05D000743 4.8e-08 63.2 233 24.5
PGSC0003DMG400040403 Solanum tuberosum HOM05D008195 ORTHO05D010950 4.8e-08 63.2 116 39.7
Aqoxy3G02386 Aquilegia oxysepala HOM05D001093 ORTHO05D000743 8.2e-08 62.4 269 23.8
Phvul.009G191900 Phaseolus vulgaris HOM05D007909 ORTHO05D000743 1.1e-07 62.0 355 23.9
Glyma.06G203100 Glycine max HOM05D007909 ORTHO05D000743 1.4e-07 61.6 174 27.6
EL10Ac3g05045 Beta vulgaris HOM05D001093 ORTHO05D000743 1.8e-07 61.2 149 26.8
Potri.014G040100 Populus trichocarpa HOM05D007909 ORTHO05D000743 2.4e-07 60.8 429 22.8
Lsat_1_v5_gn_1_13501 Lactuca sativa HOM05D001093 ORTHO05D010605 3.1e-07 60.5 137 29.9
PSO541G3559 Papaver somniferum HOM05D001093 ORTHO05D000743 3.1e-07 60.5 149 27.5
Aqoxy3G03627 Aquilegia oxysepala HOM05D001093 ORTHO05D000743 4.1e-07 60.1 143 28.7
ATR0772G157 Amborella trichopoda HOM05D001093 ORTHO05D000743 5.3e-07 59.7 106 28.3
Migut.F00931 Erythranthe guttata HOM05D001093 ORTHO05D000743 5.3e-07 59.7 140 30.0
PSO675G5193 Papaver somniferum HOM05D001093 ORTHO05D000743 5.3e-07 59.7 148 28.4
HPP92_020444 Vanilla planifolia HOM05D001093 ORTHO05D000743 5.3e-07 59.7 120 26.7
Aqoxy3G03628 Aquilegia oxysepala HOM05D001093 ORTHO05D000743 6.9e-07 59.3 192 25.5
Ca_26164_v3 Cicer arietinum L. HOM05D001093 ORTHO05D000743 6.9e-07 59.3 177 26.6
Manes.06G085200 Manihot esculenta HOM05D007909 ORTHO05D010605 6.9e-07 59.3 179 28.5
CSS0000288 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 9.0e-07 58.9 66 43.9
Psat0s231g0040 Pisum sativum HOM05D001093 ORTHO05D000743 1.5e-06 58.2 177 27.1
Zm00001eb268880 Zea mays HOM05D001093 ORTHO05D000743 1.5e-06 58.2 168 28.6
CDE06G1741 Ceratophyllum demersum HOM05D001093 ORTHO05D000743 2.0e-06 57.8 167 25.7
AUR62008519 Chenopodium quinoa HOM05D001093 ORTHO05D000743 2.0e-06 57.8 153 27.5
MBI19_g36253_MAGBIO Magnolia biondii HOM05D001093 ORTHO05D010605 2.0e-06 57.8 181 30.9
QL03p072663 Quercus lobata HOM05D001093 ORTHO05D000743 2.0e-06 57.8 252 25.0
QL03p072752 Quercus lobata HOM05D001093 ORTHO05D000743 2.0e-06 57.8 255 24.3
EL10Ac5g11122 Beta vulgaris HOM05D001093 ORTHO05D000743 2.6e-06 57.4 237 24.9
CSS0022126 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 3.4e-06 57.0 80 32.5
CSS0033439 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 3.4e-06 57.0 80 32.5
Medtr3g025330 Medicago truncatula HOM05D001093 ORTHO05D010605 3.4e-06 57.0 192 26.0
PSO063G0856 Papaver somniferum HOM05D001093 ORTHO05D000743 3.4e-06 57.0 220 20.5
Potri.019G041900 Populus trichocarpa HOM05D001093 ORTHO05D000743 3.4e-06 57.0 139 26.6
Actinidia34331 Actinidia chinensis HOM05D001093 ORTHO05D000743 4.5e-06 56.6 252 24.2
MD06G1202100 Malus domestica HOM05D001093 ORTHO05D000743 4.5e-06 56.6 264 25.4
unitig_749.g13437 Utricularia gibba HOM05D008195 ORTHO05D000743 4.5e-06 56.6 273 23.8
HPP92_012818 Vanilla planifolia HOM05D001093 ORTHO05D000743 4.5e-06 56.6 140 28.6
BcaC08g43143 Brassica carinata HOM05D001093 ORTHO05D000743 5.9e-06 56.2 113 31.0
AL1G51860 Arabidopsis lyrata HOM05D001093 ORTHO05D000743 7.6e-06 55.8 69 37.7
DCAR_010276 Daucus carota HOM05D001093 ORTHO05D000743 7.6e-06 55.8 116 29.3
Glyma.06G202900 Glycine max HOM05D007909 ORTHO05D000743 7.6e-06 55.8 177 26.0
Solyc06g066040.2 Solanum lycopersicum HOM05D008195 ORTHO05D010950 7.6e-06 55.8 51 54.9
AT1G43770 Arabidopsis thaliana HOM05D001093 ORTHO05D000743 1.0e-05 55.5 69 39.1
AUR62021572 Chenopodium quinoa HOM05D001093 ORTHO05D000743 1.0e-05 55.5 153 26.1
Dinv25213 Davidia involucrata HOM05D001093 ORTHO05D000743 1.0e-05 55.5 140 29.3
Oeu027893.3 Olea europaea HOM05D001093 ORTHO05D000743 1.0e-05 55.5 195 24.6
GSVIVG01024330001 Vitis vinifera HOM05D001093 ORTHO05D000743 1.0e-05 55.5 90 35.6


User provided reference genes

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