Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 2.5e-163 578.9 337 100.0
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 2.0e-157 559.3 337 96.4
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 7.9e-154 547.4 337 94.7
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.7e-138 495.7 340 87.4
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 6.7e-137 491.1 339 87.0
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 2.4e-126 456.1 347 82.1
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 2.0e-112 409.8 439 62.2
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.3e-99 365.9 344 69.5
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 2.9e-87 326.2 343 64.4
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 4.3e-83 312.4 347 62.0
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 4.7e-82 308.9 352 61.1
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 1.4e-81 307.4 342 56.7
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 1.8e-81 307.0 351 59.0
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 3.4e-80 302.8 321 63.2
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.3e-79 300.8 341 58.9
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 1.9e-78 297.0 337 62.6
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 4.2e-78 295.8 340 57.9
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 1.0e-76 291.2 348 58.3
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.1e-75 287.7 340 53.2
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 3.3e-75 286.2 346 59.8
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 7.3e-75 285.0 349 57.0
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 9.6e-75 284.6 364 50.3
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 2.1e-74 283.5 340 56.5
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 8.1e-74 281.6 341 57.5
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 1.4e-73 280.8 343 60.3
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 2.0e-72 276.9 347 55.9
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.4e-70 270.8 251 69.7
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 2.4e-70 270.0 342 55.8
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 1.6e-69 267.3 342 50.9
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.6e-69 267.3 340 51.2
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.7e-69 266.5 346 52.0
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 1.7e-68 263.8 346 51.7
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 2.5e-67 260.0 344 56.4
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 1.3e-66 257.7 347 51.3
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 2.1e-66 256.9 344 53.8
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 1.1e-65 254.6 346 50.3
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 1.4e-65 254.2 341 52.8
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 4.5e-64 249.2 343 51.9
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 2.2e-63 246.9 346 52.6
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 2.2e-63 246.9 340 53.8
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 2.9e-63 246.5 347 53.3
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 3.8e-63 246.1 340 53.8
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 6.4e-63 245.4 340 50.6
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 8.4e-63 245.0 333 56.8
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.4e-62 244.2 346 50.6
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 1.9e-62 243.8 376 46.5
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 2.4e-62 243.4 339 51.6
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 4.2e-62 242.7 335 51.3
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 1.2e-61 241.1 338 50.9
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 1.6e-61 240.7 341 53.1
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 2.1e-61 240.4 335 51.3
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 2.1e-61 240.4 346 48.3
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 2.7e-61 240.0 346 51.7
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 2.7e-61 240.0 333 55.3
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 7.9e-61 238.4 338 46.2
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 7.9e-61 238.4 333 55.0
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 2.3e-60 236.9 349 53.0
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 3.0e-60 236.5 355 51.0
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 5.1e-60 235.7 333 54.4
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 1.9e-59 233.8 302 50.7
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 1.9e-59 233.8 334 46.4
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 1.3e-58 231.1 338 50.6
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 4.8e-58 229.2 351 51.3
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 8.1e-58 228.4 303 45.9
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 5.3e-57 225.7 344 46.5
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 6.9e-57 225.3 330 51.2
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 9.0e-57 224.9 345 49.9
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 2.6e-56 223.4 304 46.4
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 3.4e-56 223.0 353 46.5
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 4.5e-56 222.6 346 50.0
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 5.8e-56 222.2 317 48.3
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 1.3e-55 221.1 341 49.6
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 1.7e-55 220.7 511 41.1
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 2.9e-55 219.9 331 52.6
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 2.9e-55 219.9 353 49.9
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 4.9e-55 219.2 313 52.1
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 8.4e-55 218.4 303 51.8
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 1.9e-54 217.2 336 50.9
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 2.5e-54 216.9 315 52.1
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 5.5e-54 215.7 336 48.2
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 4.6e-53 212.6 324 51.5
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 1.1e-51 208.0 340 47.9
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 1.5e-51 207.6 338 42.9
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 8.2e-50 201.8 335 43.0
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 1.1e-49 201.4 335 43.3
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 2.0e-48 197.2 313 43.1
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 7.6e-48 195.3 306 47.7
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 1.1e-46 191.4 317 47.6
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.9e-46 190.7 305 43.9
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 2.5e-46 190.3 355 40.3
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 3.2e-46 189.9 263 56.3
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 1.2e-45 188.0 341 41.6
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 2.1e-45 187.2 347 45.0
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 2.7e-45 186.8 345 45.5
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 4.6e-45 186.0 260 55.0
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 6.1e-45 185.7 300 42.0
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 6.7e-44 182.2 347 40.6
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 1.6e-42 177.6 345 39.1
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 2.8e-42 176.8 344 39.0
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 4.8e-42 176.0 257 53.3
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 1.1e-41 174.9 362 38.1
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 1.4e-41 174.5 309 42.4
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 1.4e-41 174.5 344 38.7
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 9.0e-41 171.8 345 38.0
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 2.6e-40 170.2 288 46.5
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 6.5e-39 165.6 304 40.8
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 1.4e-38 164.5 285 37.5
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 4.2e-38 162.9 335 37.9
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 1.2e-37 161.4 338 43.8
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 3.6e-37 159.8 240 45.8
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 1.0e-36 158.3 343 36.7
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 1.1e-35 154.8 237 51.1
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 4.3e-35 152.9 336 34.8
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 2.2e-34 150.6 251 43.0
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 3.7e-34 149.8 345 36.2
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 3.7e-34 149.8 282 41.5
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.1e-33 148.3 364 34.3
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 3.1e-33 146.7 358 35.5
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 9.1e-33 145.2 286 36.4
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 1.5e-32 144.4 313 36.1
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 2.6e-32 143.7 300 36.7
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 1.3e-31 141.4 338 34.3
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.9e-31 140.2 117 71.8
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 3.0e-28 130.2 290 32.8
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 9.1e-25 118.6 120 63.3
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 2.7e-21 107.1 307 31.6
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 3.6e-21 106.7 363 34.4
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 1.8e-20 104.4 196 38.3
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 2.3e-20 104.0 298 35.2
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 3.0e-20 103.6 112 58.0
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 2.0e-19 100.9 197 37.6
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 2.6e-19 100.5 298 33.2
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 6.3e-18 95.9 194 41.8
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.2e-16 91.7 107 53.3
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.2e-16 91.7 102 53.9
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.3e-15 88.2 292 29.8
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.1e-14 85.1 260 39.2
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 1.6e-13 81.3 94 53.2
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 2.3e-12 77.4 87 50.6
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 1.5e-11 74.7 87 47.1
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 1.7e-10 71.2 74 56.8
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 9.1e-09 65.5 76 57.9
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 1.5e-06 58.2 322 27.0


User provided reference genes

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