Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g033830 Solanum pennellii HOM05D017485 ORTHO05D020287 4.7e-126 454.5 229 100.0
Solyc03g114750.3 Solanum lycopersicum HOM05D017485 ORTHO05D020287 1.3e-120 436.4 229 96.5
PGSC0003DMG404024620 Solanum tuberosum HOM05D017485 ORTHO05D020287 1.9e-111 406.0 230 90.9
CAN.G982.40 Capsicum annuum HOM05D017485 ORTHO05D020287 2.9e-91 339.0 231 77.5
Peaxi162Scf00017g03281 Petunia axillaris HOM05D017485 ORTHO05D020287 3.9e-72 275.4 232 65.9
Nitab4.5_0005994g0010 Nicotiana tabacum HOM05D017485 ORTHO05D020287 5.3e-69 265.0 236 64.4
Nitab4.5_0002467g0070 Nicotiana tabacum HOM05D017485 ORTHO05D020287 4.5e-68 261.9 237 64.1
Prupe.5G210100 Prunus persica HOM05D003025 ORTHO05D003305 6.6e-11 72.0 247 28.3
Cc04_g08270 Coffea canephora HOM05D003025 ORTHO05D003305 7.3e-10 68.6 57 59.6
Gorai.001G067100 Gossypium raimondii HOM05D003025 ORTHO05D003305 1.6e-09 67.4 91 44.0
Dinv38641 Davidia involucrata HOM05D003025 ORTHO05D003305 2.1e-09 67.0 296 28.4
Hma1.2p1_0060F.1_g032730 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 2.1e-09 67.0 122 34.4
VMungo1215G0401 Vigna mungo HOM05D003025 ORTHO05D003305 2.1e-09 67.0 57 56.1
Phvul.003G038300 Phaseolus vulgaris HOM05D003025 ORTHO05D003305 2.8e-09 66.6 57 56.1
Ciclev10021731m.g Citrus clementina HOM05D003025 ORTHO05D003305 6.2e-09 65.5 246 28.0
MD13G1056500 Malus domestica HOM05D003025 ORTHO05D003305 6.2e-09 65.5 57 57.9
QL10p020762 Quercus lobata HOM05D011573 ORTHO05D003305 6.2e-09 65.5 240 30.4
Actinidia07767 Actinidia chinensis HOM05D003025 ORTHO05D003305 8.1e-09 65.1 57 52.6
CiPaw.16G080200 Carya illinoinensis HOM05D003025 ORTHO05D003305 1.1e-08 64.7 244 28.7
Sabra15G0078800 Salix brachista HOM05D003025 ORTHO05D003305 1.1e-08 64.7 255 27.1
Glyma.01G064900 Glycine max HOM05D003025 ORTHO05D003305 1.4e-08 64.3 57 54.4
Gohir.D13G085500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.4e-08 64.3 57 59.6
Gorai.013G097400 Gossypium raimondii HOM05D003025 ORTHO05D003305 1.4e-08 64.3 57 59.6
PSO782G5508 Papaver somniferum HOM05D003025 ORTHO05D003305 1.4e-08 64.3 172 33.1
Gohir.A13G088100 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.8e-08 63.9 57 59.6
Gohir.D07G063600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.8e-08 63.9 90 43.3
MD16G1055400 Malus domestica HOM05D003025 ORTHO05D003305 1.8e-08 63.9 57 57.9
PSO063G1603 Papaver somniferum HOM05D003025 ORTHO05D003305 2.4e-08 63.5 57 57.9
Hund09959 Selenicereus undatus HOM05D003025 ORTHO05D003305 6.9e-08 62.0 194 29.9
CDE10G0686 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 9.0e-08 61.6 57 57.9
Gohir.A07G058700 Gossypium hirsutum HOM05D003025 ORTHO05D003305 9.0e-08 61.6 90 42.2
Duzib251G0179 Durio zibethinus HOM05D003025 ORTHO05D003305 1.2e-07 61.2 57 52.6
HPP92_015551 Vanilla planifolia HOM05D003025 ORTHO05D003305 1.5e-07 60.8 57 56.1
Manes.14G090300 Manihot esculenta HOM05D003025 ORTHO05D003305 2.0e-07 60.5 57 56.1
THA.LOC104805213 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 2.0e-07 60.5 57 52.6
Thecc.03G108500 Theobroma cacao HOM05D003025 ORTHO05D003305 2.0e-07 60.5 47 61.7
Actinidia31928 Actinidia chinensis HOM05D003025 ORTHO05D003305 3.4e-07 59.7 160 31.2
CANSAT64G2528 Cannabis sativa HOM05D003025 ORTHO05D003305 3.4e-07 59.7 57 54.4
CsaV3_6G033910 Cucumis sativus L. HOM05D003025 ORTHO05D003305 3.4e-07 59.7 57 57.9
ClCG08G010610 Citrullus lanatus HOM05D003025 ORTHO05D003305 4.4e-07 59.3 57 56.1
PGR102G2660 Punica granatum HOM05D003025 ORTHO05D003305 4.4e-07 59.3 57 54.4
RcHm_v2.0_Chr7g0183741 Rosa chinensis HOM05D003025 ORTHO05D003305 4.4e-07 59.3 57 56.1
unitig_62.g23701 Utricularia gibba HOM05D003025 ORTHO05D003305 4.4e-07 59.3 56 50.0
FAN13G2721 Fragaria x ananassa HOM05D003025 ORTHO05D003305 5.8e-07 58.9 57 54.4
FAN18G0971 Fragaria x ananassa HOM05D003025 ORTHO05D003305 5.8e-07 58.9 57 52.6
Potri.010G138100 Populus trichocarpa HOM05D003025 ORTHO05D003305 5.8e-07 58.9 57 52.6
TPR.G38556 Trifolium pratense HOM05D003025 ORTHO05D003305 5.8e-07 58.9 55 58.2
unitig_22.g5562 Utricularia gibba HOM05D003025 ORTHO05D003305 5.8e-07 58.9 56 53.6
ATR0691G160 Amborella trichopoda HOM05D003025 ORTHO05D003305 7.6e-07 58.5 55 60.0
CSS0010260 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 7.6e-07 58.5 57 52.6
CiPaw.06G095000 Carya illinoinensis HOM05D003025 ORTHO05D003305 7.6e-07 58.5 119 36.1
MELO3C011401.2 Cucumis melo HOM05D003025 ORTHO05D003305 7.6e-07 58.5 57 56.1
MD06G1205800 Malus domestica HOM05D003025 ORTHO05D003305 7.6e-07 58.5 242 28.9
Glyma.02G122700 Glycine max HOM05D003025 ORTHO05D003305 9.9e-07 58.2 57 52.6
MBI14_g31150_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 9.9e-07 58.2 55 54.5
TAR622G0187 Trochodendron aralioides HOM05D003025 ORTHO05D003305 9.9e-07 58.2 55 58.2
unitig_8.g3969 Utricularia gibba HOM05D003025 ORTHO05D003305 9.9e-07 58.2 84 42.9
FvH4_5g13400 Fragaria vesca HOM05D003025 ORTHO05D003305 1.3e-06 57.8 57 52.6
Lalb_Chr10g0099151 Lupinus albus HOM05D003025 ORTHO05D003305 1.3e-06 57.8 57 54.4
MBI15_g31908_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 1.3e-06 57.8 60 55.0
arahy.Tifrunner.gnm1.ann1.8UFH9N Arachis hypogaea HOM05D003025 ORTHO05D003305 1.7e-06 57.4 58 56.9
CiPaw.05G121600 Carya illinoinensis HOM05D003025 ORTHO05D003305 1.7e-06 57.4 123 35.8
DCAR_030058 Daucus carota HOM05D003025 ORTHO05D003305 1.7e-06 57.4 60 51.7
Hma1.2p1_0428F.1_g150820 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 1.7e-06 57.4 57 52.6
Thecc.02G322700 Theobroma cacao HOM05D003025 ORTHO05D003305 1.7e-06 57.4 57 52.6
CDE10G0152 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 2.2e-06 57.0 139 34.5
Dinv15582 Davidia involucrata HOM05D003025 ORTHO05D003305 2.2e-06 57.0 56 55.4
Gohir.A12G159500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 2.2e-06 57.0 57 54.4
Lsat_1_v5_gn_8_37061 Lactuca sativa HOM05D003025 ORTHO05D003305 2.2e-06 57.0 57 52.6
Nn4g23540 Nelumbo nucifera HOM05D003025 ORTHO05D003305 2.2e-06 57.0 247 28.3
Nitab4.5_0001071g0040 Nicotiana tabacum HOM05D003025 ORTHO05D003305 2.2e-06 57.0 97 38.1
Psat2g085960 Pisum sativum HOM05D003025 ORTHO05D003305 2.2e-06 57.0 55 54.5
GSVIVG01010102001 Vitis vinifera HOM05D003025 ORTHO05D003305 2.2e-06 57.0 57 52.6
arahy.Tifrunner.gnm1.ann1.161SS5 Arachis hypogaea HOM05D003025 ORTHO05D003305 2.9e-06 56.6 57 50.9
CsaV3_5G033470 Cucumis sativus L. HOM05D003025 ORTHO05D003305 2.9e-06 56.6 57 54.4
Duzib248G1661 Durio zibethinus HOM05D003025 ORTHO05D003305 2.9e-06 56.6 152 33.6
Oeu024157.1 Olea europaea HOM05D003025 ORTHO05D003305 2.9e-06 56.6 57 49.1
PSO017G6048 Papaver somniferum HOM05D003025 ORTHO05D003305 2.9e-06 56.6 56 50.0
Prupe.1G293500 Prunus persica HOM05D003025 ORTHO05D003305 2.9e-06 56.6 57 52.6
ClCG05G023550 Citrullus lanatus HOM05D003025 ORTHO05D003305 3.8e-06 56.2 57 54.4
Gohir.A03G106600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 3.8e-06 56.2 57 54.4
Gohir.D02G131800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 3.8e-06 56.2 57 54.4
Gorai.005G147700 Gossypium raimondii HOM05D003025 ORTHO05D003305 3.8e-06 56.2 57 54.4
Manes.06G079500 Manihot esculenta HOM05D003025 ORTHO05D003305 3.8e-06 56.2 57 54.4
Sed0001557 Sechium edule HOM05D003025 ORTHO05D003305 3.8e-06 56.2 205 28.8
THA.LOC104801838 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 3.8e-06 56.2 57 49.1
TWI79G0747 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 3.8e-06 56.2 50 54.0
PSO478G4016 Papaver somniferum HOM05D003025 ORTHO05D003305 4.9e-06 55.8 57 47.4
Sed0016639 Sechium edule HOM05D003025 ORTHO05D003305 4.9e-06 55.8 57 57.9
Sopen04g001270 Solanum pennellii HOM05D003025 ORTHO05D003305 4.9e-06 55.8 57 52.6
Ca_05068_v3 Cicer arietinum L. HOM05D003025 ORTHO05D003305 6.4e-06 55.5 55 54.5
Medtr5g047930 Medicago truncatula HOM05D003025 ORTHO05D003305 6.4e-06 55.5 55 54.5
Os04g0467100 Oryza sativa ssp. japonica HOM05D003025 ORTHO05D003305 6.4e-06 55.5 56 55.4
Potri.015G048400 Populus trichocarpa HOM05D003025 ORTHO05D003305 6.4e-06 55.5 254 26.0
Sed0026748 Sechium edule HOM05D025218 ORTHO05D025068 6.4e-06 55.5 269 27.5
Ah.03g138600 Amaranthus hybridus HOM05D003025 ORTHO05D003305 8.4e-06 55.1 57 54.4
Lj2g0017874 Lotus japonicus HOM05D003025 ORTHO05D003305 8.4e-06 55.1 58 55.2


User provided reference genes

Program Settings