Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g033720 Solanum pennellii HOM05D007277 ORTHO05D006336 4.4e-92 341.3 173 100.0
Solyc03g114650.3 Solanum lycopersicum HOM05D007277 ORTHO05D006336 4.3e-79 298.1 189 85.7
PGSC0003DMG400024518 Solanum tuberosum HOM05D007277 ORTHO05D006336 3.4e-68 261.9 196 74.5
PGSC0003DMG400024676 Solanum tuberosum HOM05D007277 ORTHO05D006336 3.7e-62 241.9 195 72.8
QL07p042995 Quercus lobata HOM05D007277 ORTHO05D006336 4.0e-16 89.0 128 39.1
Ciclev10024167m.g Citrus clementina HOM05D007277 ORTHO05D006336 4.4e-15 85.5 127 36.2
Ciclev10029817m.g Citrus clementina HOM05D007277 ORTHO05D006336 1.7e-14 83.6 146 34.2
FAN18G2501 Fragaria x ananassa HOM05D007277 ORTHO05D006336 2.2e-14 83.2 121 40.5
QL07p042874 Quercus lobata HOM05D007277 ORTHO05D006336 3.7e-14 82.4 167 33.5
Cpa.g.sc3.199 Carica papaya HOM05D007277 ORTHO05D006336 8.3e-14 81.3 158 33.5
Cpa.g.sc3.198 Carica papaya HOM05D007277 ORTHO05D006336 1.4e-13 80.5 115 40.9
FvH4_5g13170 Fragaria vesca HOM05D007277 ORTHO05D006336 1.4e-13 80.5 139 36.7
Rhsim12G0165400 Rhododendron simsii HOM05D007277 ORTHO05D006336 1.4e-13 80.5 119 37.8
FvH4_5g13140 Fragaria vesca HOM05D007277 ORTHO05D006336 4.1e-13 79.0 121 38.0
FAN18G3246 Fragaria x ananassa HOM05D007277 ORTHO05D006336 4.1e-13 79.0 121 38.0
QL07p042879 Quercus lobata HOM05D007277 ORTHO05D006336 4.1e-13 79.0 117 35.9
Ciclev10023402m.g Citrus clementina HOM05D007277 ORTHO05D006336 5.4e-13 78.6 110 39.1
FvH4_5g13230 Fragaria vesca HOM05D007277 ORTHO05D006336 5.4e-13 78.6 121 38.8
QL07p042928 Quercus lobata HOM05D007277 ORTHO05D006336 5.4e-13 78.6 124 37.1
Cpa.g.sc3.210 Carica papaya HOM05D007277 ORTHO05D006336 7.0e-13 78.2 115 40.0
Thecc.03G110900 Theobroma cacao HOM05D007277 ORTHO05D006336 7.0e-13 78.2 150 36.0
Atru.chr4.1305 Acer truncatum HOM05D010298 ORTHO05D006336 1.2e-12 77.4 168 31.5
QL07p042903 Quercus lobata HOM05D007277 ORTHO05D006336 1.6e-12 77.0 126 36.5
Dinv38624 Davidia involucrata HOM05D007277 ORTHO05D006336 2.0e-12 76.6 134 33.6
FAN08G1790 Fragaria x ananassa HOM05D007277 ORTHO05D006336 2.0e-12 76.6 121 37.2
CSS0000915 Camellia sinensis var. sinensis HOM05D007277 ORTHO05D006336 4.5e-12 75.5 113 36.3
Ciclev10023596m.g Citrus clementina HOM05D010635 ORTHO05D006336 4.5e-12 75.5 110 39.1
FAN18G0686 Fragaria x ananassa HOM05D007277 ORTHO05D006336 4.5e-12 75.5 173 30.6
FvH4_5g13130 Fragaria vesca HOM05D007277 ORTHO05D006336 5.9e-12 75.1 173 30.6
QL10p012835 Quercus lobata HOM05D007277 ORTHO05D006336 1.0e-11 74.3 128 33.6
MD03G1011400 Malus domestica HOM05D007277 ORTHO05D006336 1.3e-11 73.9 125 35.2
FAN13G2869 Fragaria x ananassa HOM05D007277 ORTHO05D006336 1.7e-11 73.6 129 28.7
Prupe.6G011800 Prunus persica HOM05D007277 ORTHO05D006336 1.7e-11 73.6 131 35.1
Haze_27687 Corylus avellana HOM05D007277 ORTHO05D006336 2.2e-11 73.2 106 36.8
Haze_27688 Corylus avellana HOM05D007277 ORTHO05D006336 2.2e-11 73.2 106 36.8
Actinidia22592 Actinidia chinensis HOM05D007277 ORTHO05D006336 3.8e-11 72.4 160 26.9
Cfa002614 Carpinus fangiana HOM05D007277 ORTHO05D006336 3.8e-11 72.4 111 36.0
Cfa002615 Carpinus fangiana HOM05D007277 ORTHO05D006336 3.8e-11 72.4 106 36.8
COL.COLO4_28831 Corchorus olitorius HOM05D007277 ORTHO05D006336 3.8e-11 72.4 165 33.3
FvH4_5g13190 Fragaria vesca HOM05D007277 ORTHO05D013598 5.0e-11 72.0 108 37.0
QL07p042908 Quercus lobata HOM05D007277 ORTHO05D006336 1.5e-10 70.5 168 31.5
Atru.chr4.1303 Acer truncatum HOM05D010298 ORTHO05D012539 1.9e-10 70.1 112 36.6
Cpa.g.sc3.209 Carica papaya HOM05D007277 ORTHO05D006336 1.9e-10 70.1 141 34.0
Atru.chr9.2085 Acer truncatum HOM05D007277 ORTHO05D006336 2.5e-10 69.7 141 30.5
Manes.05G115300 Manihot esculenta HOM05D007277 ORTHO05D006336 2.5e-10 69.7 116 41.4
FvH4_5g13220 Fragaria vesca HOM05D007277 ORTHO05D006336 3.2e-10 69.3 94 41.5
Prupe.1G109400 Prunus persica HOM05D007277 ORTHO05D006336 3.2e-10 69.3 140 34.3
Haze_24862 Corylus avellana HOM05D007277 ORTHO05D006336 7.2e-10 68.2 114 33.3
FAN18G2870 Fragaria x ananassa HOM05D000423 ORTHO05D000284 7.2e-10 68.2 124 35.5
MD11G1013400 Malus domestica HOM05D007277 ORTHO05D006336 9.4e-10 67.8 124 31.5
QL07p042983 Quercus lobata HOM05D007277 ORTHO05D006336 9.4e-10 67.8 138 34.1
RcHm_v2.0_Chr7g0241491 Rosa chinensis HOM05D007277 ORTHO05D006336 9.4e-10 67.8 162 30.2
Actinidia24268 Actinidia chinensis HOM05D007277 ORTHO05D006336 1.2e-09 67.4 111 29.7
QL10p051898 Quercus lobata HOM05D007277 ORTHO05D006336 1.2e-09 67.4 148 29.7
Haze_24866 Corylus avellana HOM05D007277 ORTHO05D006336 2.1e-09 66.6 105 33.3
FAN08G1781 Fragaria x ananassa HOM05D007277 ORTHO05D006336 2.1e-09 66.6 112 31.2
Gohir.A07G058000 Gossypium hirsutum HOM05D007277 ORTHO05D006336 2.1e-09 66.6 172 28.5
Gohir.D07G062800 Gossypium hirsutum HOM05D007277 ORTHO05D006336 2.1e-09 66.6 172 27.3
Potri.007G133200 Populus trichocarpa HOM05D010635 ORTHO05D006336 2.1e-09 66.6 154 31.2
QL02p080387 Quercus lobata HOM05D007277 ORTHO05D006336 2.1e-09 66.6 144 33.3
Potri.017G019932 Populus trichocarpa HOM05D010635 ORTHO05D006336 4.7e-09 65.5 112 34.8
Sabra07G0120000 Salix brachista HOM05D010635 ORTHO05D006336 4.7e-09 65.5 120 31.7
Cfa021203 Carpinus fangiana HOM05D007277 ORTHO05D006336 6.1e-09 65.1 115 33.0
Ciclev10023444m.g Citrus clementina HOM05D007277 ORTHO05D006336 6.1e-09 65.1 110 35.5
Gorai.001G066300 Gossypium raimondii HOM05D007277 ORTHO05D006336 1.0e-08 64.3 174 27.6
RcHm_v2.0_Chr7g0240781 Rosa chinensis HOM05D007277 ORTHO05D006336 1.8e-08 63.5 111 34.2
Prupe.6G011700 Prunus persica HOM05D007277 ORTHO05D006336 2.3e-08 63.2 121 32.2
QL09p028728 Quercus lobata HOM05D007277 ORTHO05D006336 2.3e-08 63.2 123 32.5
MD03G1009100 Malus domestica HOM05D007277 ORTHO05D006336 3.0e-08 62.8 153 29.4
Thecc.09G294000 Theobroma cacao HOM05D010298 ORTHO05D012539 3.0e-08 62.8 108 33.3
Ciclev10024327m.g Citrus clementina HOM05D007277 ORTHO05D006336 4.0e-08 62.4 107 37.4
DCAR_010189 Daucus carota HOM05D007277 ORTHO05D006336 4.0e-08 62.4 114 36.0
QL02p080510 Quercus lobata HOM05D007277 ORTHO05D006336 5.2e-08 62.0 134 32.1
MD03G1010100 Malus domestica HOM05D007277 ORTHO05D006336 6.8e-08 61.6 130 32.3
Potri.017G021796 Populus trichocarpa HOM05D010635 ORTHO05D006336 1.5e-07 60.5 108 34.3
Actinidia24271 Actinidia chinensis HOM05D007277 ORTHO05D006336 2.6e-07 59.7 105 28.6
Thecc.03G111200 Theobroma cacao HOM05D007277 ORTHO05D006336 2.6e-07 59.7 129 33.3
QL10p052020 Quercus lobata HOM05D007277 ORTHO05D006336 3.4e-07 59.3 134 29.9
Prupe.6G011200 Prunus persica HOM05D007277 ORTHO05D006336 4.4e-07 58.9 122 29.5
FvH4_5g13221 Fragaria vesca HOM05D007277 ORTHO05D006336 5.7e-07 58.5 99 31.3
Gorai.006G107900 Gossypium raimondii HOM05D010298 ORTHO05D012539 5.7e-07 58.5 112 30.4
MD11G1013900 Malus domestica HOM05D007277 ORTHO05D006336 5.7e-07 58.5 123 28.5
QL11p034196 Quercus lobata HOM05D007277 ORTHO05D006336 5.7e-07 58.5 138 31.9
MD14G1141800 Malus domestica HOM05D007277 ORTHO05D006336 9.8e-07 57.8 125 28.8
Potri.017G018901 Populus trichocarpa HOM05D010635 ORTHO05D006336 9.8e-07 57.8 111 33.3
Thecc.09G294100 Theobroma cacao HOM05D010298 ORTHO05D012539 9.8e-07 57.8 111 32.4
Gohir.D09G091480 Gossypium hirsutum HOM05D010298 ORTHO05D012539 1.3e-06 57.4 112 30.4
Cfa002609 Carpinus fangiana HOM05D007277 ORTHO05D006336 1.7e-06 57.0 106 32.1
Actinidia10434 Actinidia chinensis HOM05D007277 ORTHO05D006336 2.2e-06 56.6 138 31.2
Haze_24863 Corylus avellana HOM05D000010 ORTHO05D006336 2.2e-06 56.6 116 31.0
Gohir.A09G091466 Gossypium hirsutum HOM05D010298 ORTHO05D012539 2.8e-06 56.2 125 28.8
QL10p047937 Quercus lobata HOM05D007277 ORTHO05D006336 2.8e-06 56.2 120 25.8
Sabra17G0014600 Salix brachista HOM05D010635 ORTHO05D006336 4.9e-06 55.5 137 32.8
TAR636G1532 Trochodendron aralioides HOM05D012741 ORTHO05D006336 4.9e-06 55.5 124 27.4
Sabra07G0108000 Salix brachista HOM05D010635 ORTHO05D006336 6.3e-06 55.1 110 29.1
Sabra17G0002100 Salix brachista HOM05D010635 ORTHO05D006336 6.3e-06 55.1 137 32.8


User provided reference genes

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