Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g033530 Solanum pennellii HOM05D007960 ORTHO05D010026 8.1e-57 223.4 104 100.0
Solyc03g114430.1 Solanum lycopersicum HOM05D007960 ORTHO05D010026 2.7e-52 208.4 110 90.9
PGSC0003DMG400041876 Solanum tuberosum HOM05D007960 ORTHO05D010026 8.7e-43 176.8 108 78.7
Nitab4.5_0000646g0060 Nicotiana tabacum HOM05D007960 ORTHO05D010026 3.9e-35 151.4 119 65.5
Nitab4.5_0004342g0110 Nicotiana tabacum HOM05D007960 ORTHO05D010026 1.5e-34 149.4 120 65.8
Peaxi162Scf00017g03010 Petunia axillaris HOM05D007960 ORTHO05D001491 4.0e-32 141.4 103 66.0
Cc04_g07760 Coffea canephora HOM05D007960 ORTHO05D010026 6.3e-17 90.9 118 45.8
Hma1.2p1_0340F.1_g130110 Hydrangea macrophylla HOM05D007960 ORTHO05D010026 9.0e-16 87.0 115 48.7
Psat1g027680 Pisum sativum HOM05D007960 ORTHO05D010026 1.2e-15 86.7 88 53.4
Nn3g17652 Nelumbo nucifera HOM05D007960 ORTHO05D010026 2.0e-15 85.9 103 49.5
Medtr2g056070 Medicago truncatula HOM05D007960 ORTHO05D010026 5.9e-15 84.3 86 54.7
Haze_18568 Corylus avellana HOM05D007960 ORTHO05D010026 1.0e-14 83.6 73 60.3
Haze_18570 Corylus avellana HOM05D007960 ORTHO05D010026 1.0e-14 83.6 73 60.3
Lsat_1_v5_gn_1_15660 Lactuca sativa HOM05D007960 ORTHO05D010026 5.0e-14 81.3 107 45.8
Atru.chr9.701 Acer truncatum HOM05D007960 ORTHO05D010026 1.1e-13 80.1 96 53.1
Lj1g0016835 Lotus japonicus HOM05D007960 ORTHO05D010026 1.9e-13 79.3 72 59.7
QL10p022177 Quercus lobata HOM05D007960 ORTHO05D010026 2.5e-13 79.0 97 49.5
TAR371G0138 Trochodendron aralioides HOM05D007960 ORTHO05D010026 4.2e-13 78.2 85 48.2
TPR.G31006 Trifolium pratense HOM05D007960 ORTHO05D010026 5.5e-13 77.8 88 52.3
CiPaw.15G122900 Carya illinoinensis HOM05D007960 ORTHO05D010026 7.2e-13 77.4 115 41.7
Phvul.003G179700 Phaseolus vulgaris HOM05D007960 ORTHO05D010026 2.1e-12 75.9 77 51.9
Glyma.17G123900 Glycine max HOM05D007960 ORTHO05D010026 2.7e-12 75.5 76 55.3
Lalb_Chr13g0302531 Lupinus albus HOM05D007960 ORTHO05D010026 6.1e-12 74.3 57 59.6
Thecc.03G114600 Theobroma cacao HOM05D007960 ORTHO05D010026 7.9e-12 73.9 88 47.7
ECA247G3950 Erigeron canadensis HOM05D007960 ORTHO05D010026 1.4e-11 73.2 87 49.4
VMungo1215G0525 Vigna mungo HOM05D007960 ORTHO05D010026 1.4e-11 73.2 73 56.2
Dinv38606 Davidia involucrata HOM05D000227 ORTHO05D001491 3.0e-11 72.0 83 50.6
Sc04g0003840 Simmondsia chinensis HOM05D007960 ORTHO05D010026 6.7e-11 70.9 97 46.4
Cfa019847 Carpinus fangiana HOM05D007960 ORTHO05D010026 1.5e-10 69.7 68 57.4
FAN18G0932 Fragaria x ananassa HOM05D000227 ORTHO05D001491 1.5e-10 69.7 94 48.9
Ah.11g047280 Amaranthus hybridus HOM05D007960 ORTHO05D010026 2.0e-10 69.3 100 42.0
Ciclev10024471m.g Citrus clementina HOM05D007960 ORTHO05D010026 2.5e-10 68.9 104 40.4
Cpa.g.sc13.82 Carica papaya HOM05D007960 ORTHO05D010026 5.7e-10 67.8 83 45.8
Gohir.A03G074200 Gossypium hirsutum HOM05D007960 ORTHO05D010026 5.7e-10 67.8 69 53.6
Sc04g0003850 Simmondsia chinensis HOM05D007960 ORTHO05D010026 7.4e-10 67.4 107 43.0
FAN13G1649 Fragaria x ananassa HOM05D000227 ORTHO05D001491 9.7e-10 67.0 94 46.8
Manes.01G022400 Manihot esculenta HOM05D007960 ORTHO05D010026 9.7e-10 67.0 75 52.0
Lalb_Chr12g0197501 Lupinus albus HOM05D007960 ORTHO05D010026 1.7e-09 66.2 48 68.8
MD14G1219300 Malus domestica HOM05D007960 ORTHO05D010026 1.7e-09 66.2 66 56.1
Gohir.D03G100500 Gossypium hirsutum HOM05D007960 ORTHO05D010026 2.8e-09 65.5 69 53.6
Gorai.003G106000 Gossypium raimondii HOM05D007960 ORTHO05D010026 2.8e-09 65.5 69 53.6
Aqoxy3G03839 Aquilegia oxysepala HOM05D007960 ORTHO05D010026 4.8e-09 64.7 103 42.7
RcHm_v2.0_Chr7g0184281 Rosa chinensis HOM05D007960 ORTHO05D010026 6.3e-09 64.3 96 45.8
Glyma.05G015600 Glycine max HOM05D007960 ORTHO05D010026 8.2e-09 63.9 75 48.0
BcaC08g46805 Brassica carinata HOM05D007960 ORTHO05D010026 1.1e-08 63.5 62 54.8
BolC6t39852H Brassica oleracea HOM05D007960 ORTHO05D010026 1.1e-08 63.5 62 54.8
BcaC08g46834 Brassica carinata HOM05D007960 ORTHO05D010026 1.4e-08 63.2 62 54.8
A07p39920 Brassica napus HOM05D007960 ORTHO05D010026 1.4e-08 63.2 62 54.8
BraA07t31538Z Brassica rapa HOM05D007960 ORTHO05D010026 1.4e-08 63.2 62 54.8
Ca_02635_v3 Cicer arietinum L. HOM05D007960 ORTHO05D010026 1.4e-08 63.2 59 55.9
Ca_30215_v3 Cicer arietinum L. HOM05D007960 ORTHO05D010026 1.4e-08 63.2 59 55.9
AL2G33950 Arabidopsis lyrata HOM05D007960 ORTHO05D010026 1.8e-08 62.8 107 39.3
THA.LOC104812118 Tarenaya hassleriana HOM05D007960 ORTHO05D010026 1.8e-08 62.8 98 42.9
C06p48150 Brassica napus HOM05D007960 ORTHO05D010026 3.1e-08 62.0 62 53.2
Sc04g0003950 Simmondsia chinensis HOM05D007960 ORTHO05D010026 3.1e-08 62.0 97 44.3
Carub.0002s2086 Capsella rubella HOM05D007960 ORTHO05D010026 4.1e-08 61.6 71 49.3
Sp5g29280 Schrenkiella parvula HOM05D007960 ORTHO05D010026 1.2e-07 60.1 116 40.5
Sed0018526 Sechium edule HOM05D007960 ORTHO05D010026 1.2e-07 60.1 44 68.2
Aa31LG4G4360 Aethionema arabicum HOM05D007960 ORTHO05D010026 1.5e-07 59.7 109 39.4
AT1G74055 Arabidopsis thaliana HOM05D007960 ORTHO05D010026 1.5e-07 59.7 113 38.9
Thhalv10019432m.g Eutrema salsugineum HOM05D007960 ORTHO05D010026 2.6e-07 58.9 71 49.3
CARHR067210 Cardamine hirsuta HOM05D007960 ORTHO05D010026 3.4e-07 58.5 71 45.1
ClCG04G011400 Citrullus lanatus HOM05D007960 ORTHO05D010026 3.4e-07 58.5 65 49.2
Actinidia16062 Actinidia chinensis HOM05D000227 ORTHO05D001491 1.0e-06 57.0 68 50.0
PGR044G2003 Punica granatum HOM05D007960 ORTHO05D010026 5.0e-06 54.7 57 50.9
Rhsim11G0054500 Rhododendron simsii HOM05D007960 ORTHO05D010026 5.0e-06 54.7 74 50.0
Prupe.5G214000 Prunus persica HOM05D007960 ORTHO05D010026 8.5e-06 53.9 98 39.8


User provided reference genes

Program Settings