Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 0.0e+00 2542.3 1299 100.0
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 0.0e+00 2376.3 1346 92.2
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 0.0e+00 2098.2 1304 82.5
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 0.0e+00 2022.7 1308 81.2
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 0.0e+00 2020.4 1258 84.2
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 0.0e+00 1631.3 1008 84.4
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1388.6 1292 56.9
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 0.0e+00 1363.2 1304 56.1
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1290.4 1277 53.7
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 0.0e+00 1270.0 1294 53.3
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1268.8 1288 53.0
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1256.5 1290 51.7
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1255.7 1290 52.0
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 0.0e+00 1248.0 1289 52.8
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 0.0e+00 1236.1 1298 52.4
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 0.0e+00 1234.9 1310 50.4
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 0.0e+00 1233.4 1154 55.8
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1230.3 1288 50.8
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 0.0e+00 1229.9 1298 52.2
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 1226.8 1282 50.9
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 0.0e+00 1224.5 1331 51.8
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1223.4 1288 51.8
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 0.0e+00 1213.7 1283 50.5
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1203.0 1288 50.2
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 0.0e+00 1196.4 1313 49.6
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 0.0e+00 1189.1 1397 46.7
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 0.0e+00 1187.2 1300 49.9
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 0.0e+00 1166.4 1275 48.9
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 0.0e+00 1164.8 1153 54.4
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 0.0e+00 1164.1 1286 49.6
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 0.0e+00 1162.5 1296 48.1
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1155.6 1293 49.7
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 0.0e+00 1147.9 1279 49.7
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 0.0e+00 1147.9 1286 48.4
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 0.0e+00 1144.8 1310 49.4
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 0.0e+00 1141.7 1280 48.0
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1137.5 1302 47.7
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 0.0e+00 1137.1 1281 47.5
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1135.2 1284 48.0
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1133.2 1274 49.0
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 0.0e+00 1133.2 1275 48.9
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 0.0e+00 1132.9 1280 48.1
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 0.0e+00 1128.6 1284 47.6
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 0.0e+00 1127.9 1271 48.7
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1126.7 1157 51.9
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 0.0e+00 1120.9 1302 47.2
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 0.0e+00 1117.4 1318 47.7
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1103.6 1292 46.9
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1102.8 1283 47.2
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 0.0e+00 1097.0 1302 47.2
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 0.0e+00 1091.6 1326 47.7
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 0.0e+00 1090.5 1286 46.8
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1089.3 1275 46.6
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 8.9e-312 1073.5 1291 46.1
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 2.6e-309 1065.8 1300 45.9
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 4.8e-308 1061.6 1280 46.2
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 5.2e-302 1041.6 1300 44.8
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 2.4e-299 1032.7 1181 48.4
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 3.2e-296 1022.3 1293 45.0
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 9.4e-296 1020.8 1308 43.5
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 9.4e-296 1020.8 1150 47.7
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 1.6e-295 1020.0 1322 42.5
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 1.8e-294 1016.5 1294 43.3
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 4.0e-294 1015.4 1313 42.9
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 6.8e-294 1014.6 1133 49.5
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 2.8e-292 1009.2 1304 42.9
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 1.8e-291 1006.5 1287 45.0
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 3.8e-289 998.8 1294 42.4
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 4.7e-287 991.9 1057 49.7
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 1.8e-286 989.9 1294 42.4
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 4.9e-284 981.9 1290 42.5
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 4.9e-284 981.9 1290 42.5
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 6.3e-284 981.5 1294 42.8
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 4.1e-283 978.8 1313 41.8
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 8.6e-281 971.1 1288 41.9
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 6.8e-278 961.4 1131 45.8
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 2.6e-277 959.5 1232 43.5
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 7.0e-275 951.4 1040 48.4
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 1.1e-272 944.1 1147 46.4
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 4.7e-271 938.7 1294 41.8
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 5.4e-267 925.2 901 53.8
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 3.1e-262 909.4 1296 40.1
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 3.0e-257 892.9 1207 43.1
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 9.9e-253 877.9 1241 42.1
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 1.6e-250 870.5 1221 42.7
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 1.5e-248 864.0 757 59.2
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 1.2e-226 791.2 866 49.8
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 1.8e-217 760.8 1056 41.8
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 2.3e-217 760.4 1041 43.9
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 5.7e-216 755.7 1151 38.6
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 2.4e-214 750.4 1113 40.2
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 1.1e-211 741.5 768 53.0
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 3.6e-194 683.3 1352 34.5
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 1.4e-190 671.4 844 44.7
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 2.4e-190 670.6 1008 38.9
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 3.8e-188 663.3 357 95.0
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 6.5e-180 636.0 797 43.5
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 2.3e-161 574.3 463 62.2
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 3.3e-155 553.9 653 45.5
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 2.3e-148 531.2 495 57.6
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 6.2e-146 523.1 719 43.0
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 7.8e-141 506.1 644 44.6
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 2.2e-135 488.0 582 46.0
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 2.4e-118 431.4 650 38.5
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 5.3e-113 413.7 291 73.5
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 5.5e-110 403.7 396 55.3
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 1.8e-108 398.7 467 48.4
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 3.3e-91 341.3 1264 25.7
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 8.2e-90 336.7 1269 25.2
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.4e-89 335.9 481 40.7
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 8.8e-76 290.0 610 35.6
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.0e-68 266.5 386 38.6
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 8.8e-68 263.5 392 38.3
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.3e-66 259.6 383 37.9
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 7.5e-43 180.6 323 36.2
SHI01039 Sapria himalayana HOM05D005651 ORTHO05D006877 1.3e-39 169.9 165 52.1
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 2.0e-35 156.0 138 56.5
BraA03t12111Z Brassica rapa HOM05D005651 ORTHO05D006877 4.4e-35 154.8 136 58.1
Ah.04g149630 Amaranthus hybridus HOM05D005651 ORTHO05D006877 7.5e-35 154.1 140 55.7
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 4.9e-34 151.4 192 44.8
Lalb_Chr24g0394541 Lupinus albus HOM05D005651 ORTHO05D006877 4.6e-32 144.8 135 57.0
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 1.9e-25 122.9 209 34.4
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 1.1e-22 113.6 117 51.3
FAN22G0619 Fragaria x ananassa HOM05D005651 ORTHO05D006877 6.8e-20 104.4 128 43.8
CBR_g39378 Chara braunii HOM05D005651 ORTHO05D006877 4.1e-17 95.1 429 21.4
Lj5P691T0 Lonicera japonica HOM05D005651 ORTHO05D006877 4.6e-16 91.7 117 45.3
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 3.3e-14 85.5 107 41.1
Pp3c5_2370 Physcomitrium patens HOM05D005651 ORTHO05D006877 2.1e-13 82.8 292 27.4
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 2.9e-10 72.4 70 50.0
TAR633G2085 Trochodendron aralioides HOM05D005651 ORTHO05D006877 2.1e-08 66.2 75 46.7
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 3.9e-07 62.0 65 49.2


User provided reference genes

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