Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g032870 Solanum pennellii HOM05D003119 ORTHO05D003559 1.3e-165 586.3 284 100.0
Solyc03g113820.3 Solanum lycopersicum HOM05D003119 ORTHO05D003559 7.6e-158 560.5 273 98.5
PGSC0003DMG400024584 Solanum tuberosum HOM05D003119 ORTHO05D003559 9.3e-156 553.5 273 97.4
CAN.G853.15 Capsicum annuum HOM05D003119 ORTHO05D003559 2.2e-141 505.8 271 88.6
Nitab4.5_0008927g0020 Nicotiana tabacum HOM05D003119 ORTHO05D003559 5.0e-141 504.6 273 87.5
Peaxi162Scf00017g02524 Petunia axillaris HOM05D003119 ORTHO05D003559 1.6e-139 499.6 273 87.9
Nitab4.5_0003386g0030 Nicotiana tabacum HOM05D003119 ORTHO05D003559 4.4e-129 464.9 253 87.4
Cc04_g12970 Coffea canephora HOM05D003119 ORTHO05D003559 5.9e-118 427.9 277 73.6
Dinv20699 Davidia involucrata HOM05D003119 ORTHO05D003559 9.4e-116 420.6 273 72.5
TAR629G2536 Trochodendron aralioides HOM05D003119 ORTHO05D003559 1.6e-115 419.9 273 71.1
Lj9C454T4 Lonicera japonica HOM05D003119 ORTHO05D003559 6.8e-114 414.5 273 71.4
Ciclev10018883m.g Citrus clementina HOM05D003119 ORTHO05D003559 4.8e-112 408.3 273 71.1
CSS0022012 Camellia sinensis var. sinensis HOM05D003119 ORTHO05D003559 2.4e-111 406.0 274 69.3
Hma1.2p1_0002F.1_g002830 Hydrangea macrophylla HOM05D003119 ORTHO05D003559 3.1e-111 405.6 266 71.1
Potri.012G075932 Populus trichocarpa HOM05D003119 ORTHO05D003559 1.2e-110 403.7 273 70.0
vmacro19356 Vaccinium macrocarpon HOM05D003119 ORTHO05D003559 2.0e-110 402.9 271 70.5
QL10p012342 Quercus lobata HOM05D003119 ORTHO05D003559 3.5e-110 402.1 268 71.3
MD14G1187100 Malus domestica HOM05D003119 ORTHO05D003559 4.5e-110 401.7 269 72.9
Sabra12G0054000 Salix brachista HOM05D003119 ORTHO05D003559 1.7e-109 399.8 273 69.2
Haze_07437 Corylus avellana HOM05D003119 ORTHO05D003559 8.5e-109 397.5 265 71.3
Atru.chr9.2402 Acer truncatum HOM05D003119 ORTHO05D003559 1.1e-108 397.1 273 68.9
Ca_16209_v3 Cicer arietinum L. HOM05D003119 ORTHO05D003559 1.1e-108 397.1 264 72.3
Lj1g0014859 Lotus japonicus HOM05D003119 ORTHO05D003559 1.1e-108 397.1 264 72.3
Prupe.5G179300 Prunus persica HOM05D003119 ORTHO05D003559 1.9e-108 396.4 264 72.0
Psat0s489g0080 Pisum sativum HOM05D003119 ORTHO05D003559 2.5e-108 396.0 267 70.8
Medtr3g078410 Medicago truncatula HOM05D003119 ORTHO05D003559 1.2e-107 393.7 264 71.6
Oeu018528.1 Olea europaea HOM05D003119 ORTHO05D003559 2.1e-107 392.9 273 71.1
GSVIVG01007826001 Vitis vinifera HOM05D003119 ORTHO05D003559 2.7e-107 392.5 271 69.4
FvH4_5g16380 Fragaria vesca HOM05D003119 ORTHO05D003559 1.8e-106 389.8 273 70.3
FAN18G1370 Fragaria x ananassa HOM05D003119 ORTHO05D003559 1.8e-106 389.8 273 70.3
VMungo1309G2946 Vigna mungo HOM05D003119 ORTHO05D003559 3.0e-106 389.0 265 70.9
arahy.Tifrunner.gnm1.ann1.P53GXH Arachis hypogaea HOM05D003119 ORTHO05D003559 4.0e-106 388.7 265 70.6
Phvul.009G182100 Phaseolus vulgaris HOM05D003119 ORTHO05D003559 4.0e-106 388.7 264 70.1
TPR.G31478 Trifolium pratense HOM05D003119 ORTHO05D003559 5.2e-106 388.3 264 71.2
RcHm_v2.0_Chr7g0179741 Rosa chinensis HOM05D003119 ORTHO05D003559 6.8e-106 387.9 265 69.8
FAN08G2581 Fragaria x ananassa HOM05D003119 ORTHO05D003559 8.8e-106 387.5 282 68.1
Duzib205G0437 Durio zibethinus HOM05D003119 ORTHO05D003559 1.2e-105 387.1 263 71.1
Manes.14G070200 Manihot esculenta HOM05D003119 ORTHO05D003559 1.5e-105 386.7 276 68.1
arahy.Tifrunner.gnm1.ann1.7YSS56 Arachis hypogaea HOM05D003119 ORTHO05D003559 2.0e-105 386.3 265 70.2
Glyma.06G186000 Glycine max HOM05D003119 ORTHO05D003559 2.6e-105 386.0 266 69.2
Rhsim08G0167900 Rhododendron simsii HOM05D003119 ORTHO05D003559 2.6e-105 386.0 267 68.9
Thecc.03G004100 Theobroma cacao HOM05D003119 ORTHO05D003559 3.4e-105 385.6 269 67.7
Eucgr.B00338 Eucalyptus grandis HOM05D003119 ORTHO05D003559 1.3e-104 383.6 279 66.3
Gohir.D07G074200 Gossypium hirsutum HOM05D003119 ORTHO05D003559 1.3e-104 383.6 265 69.4
Lsat_1_v5_gn_4_73520 Lactuca sativa HOM05D003119 ORTHO05D003559 1.7e-104 383.3 266 66.9
Cpa.g.sc35.39 Carica papaya HOM05D003119 ORTHO05D003559 4.9e-104 381.7 275 67.3
ECA232G0870 Erigeron canadensis HOM05D003119 ORTHO05D003559 4.9e-104 381.7 280 64.3
SalBow3G3123 Salvia bowleyana HOM05D003119 ORTHO05D003559 4.9e-104 381.7 277 65.7
Gorai.001G078400 Gossypium raimondii HOM05D003119 ORTHO05D003559 6.3e-104 381.3 265 69.1
HanXRQChr09g0271881 Helianthus annuus HOM05D003119 ORTHO05D003559 6.3e-104 381.3 273 67.0
Gohir.A07G069566 Gossypium hirsutum HOM05D003119 ORTHO05D003559 5.4e-103 378.3 261 69.3
Aqoxy3G03116 Aquilegia oxysepala HOM05D003119 ORTHO05D003559 1.0e-101 374.0 265 64.9
PGR083G0248 Punica granatum HOM05D003119 ORTHO05D003559 2.9e-101 372.5 271 64.2
ATR0712G088 Amborella trichopoda HOM05D003119 ORTHO05D003559 1.9e-100 369.8 266 65.4
PSO832G2904 Papaver somniferum HOM05D003119 ORTHO05D003559 2.1e-99 366.3 276 62.3
TWI15G0194 Tripterygium wilfordii HOM05D003119 ORTHO05D003559 3.6e-99 365.5 264 66.7
Sed0021395 Sechium edule HOM05D003119 ORTHO05D003559 8.0e-99 364.4 273 64.8
MBI14_g13279_MAGBIO Magnolia biondii HOM05D003119 ORTHO05D003559 1.0e-98 364.0 272 61.4
MELO3C017123.2 Cucumis melo HOM05D003119 ORTHO05D003559 1.2e-97 360.5 278 64.0
CsaV3_1G001810 Cucumis sativus L. HOM05D003119 ORTHO05D003559 6.4e-96 354.8 273 63.0
FAN13G2511 Fragaria x ananassa HOM05D003119 ORTHO05D003559 1.5e-92 343.6 274 63.1
ClCG06G016700 Citrullus lanatus HOM05D003119 ORTHO05D003559 1.2e-89 334.0 244 64.3
SEGI_13141 Sequoiadendron giganteum HOM05D003119 ORTHO05D003559 6.2e-83 311.6 275 54.5
Nitab4.5_0008441g0010 Nicotiana tabacum HOM05D003119 ORTHO05D003559 1.1e-76 290.8 269 51.7
Nitab4.5_0000707g0170 Nicotiana tabacum HOM05D003119 ORTHO05D003559 1.5e-76 290.4 269 52.0
TAR633G1226 Trochodendron aralioides HOM05D003119 ORTHO05D003559 1.5e-76 290.4 265 51.7
Peaxi162Scf00694g00124 Petunia axillaris HOM05D003119 ORTHO05D003559 1.9e-76 290.0 269 51.3
Zm00001eb068240 Zea mays HOM05D003119 ORTHO05D003559 1.9e-76 290.0 270 55.2
Solyc01g087610.3 Solanum lycopersicum HOM05D003119 ORTHO05D003559 2.5e-76 289.7 267 52.4
CDE11G1116 Ceratophyllum demersum HOM05D003119 ORTHO05D003559 9.5e-76 287.7 268 51.1
Zm00001eb394460 Zea mays HOM05D003119 ORTHO05D003559 1.2e-75 287.3 268 50.7
CAN.G219.63 Capsicum annuum HOM05D003119 ORTHO05D003559 2.1e-75 286.6 267 52.4
Sopen01g034580 Solanum pennellii HOM05D003119 ORTHO05D003559 2.8e-75 286.2 267 52.1
COL.COLO4_04878 Corchorus olitorius HOM05D003119 ORTHO05D003559 3.6e-75 285.8 264 50.8
Nn7g36274 Nelumbo nucifera HOM05D003119 ORTHO05D003559 3.6e-75 285.8 265 50.9
Prupe.2G020300 Prunus persica HOM05D003119 ORTHO05D003559 4.7e-75 285.4 265 51.3
FAN10G2435 Fragaria x ananassa HOM05D003119 ORTHO05D003559 3.1e-74 282.7 266 49.6
Gorai.004G170700 Gossypium raimondii HOM05D003119 ORTHO05D003559 3.1e-74 282.7 265 50.6
Cc02_g29010 Coffea canephora HOM05D003119 ORTHO05D003559 4.0e-74 282.3 271 49.8
Gohir.A08G142900 Gossypium hirsutum HOM05D003119 ORTHO05D003559 4.0e-74 282.3 265 50.6
Gohir.D08G163800 Gossypium hirsutum HOM05D003119 ORTHO05D003559 4.0e-74 282.3 265 50.6
ATR0626G097 Amborella trichopoda HOM05D003119 ORTHO05D003559 8.9e-74 281.2 266 50.4
Manes.10G139100 Manihot esculenta HOM05D003119 ORTHO05D003559 8.9e-74 281.2 264 50.8
Thecc.01G407300 Theobroma cacao HOM05D003119 ORTHO05D003559 1.5e-73 280.4 264 50.0
MD07G1018500 Malus domestica HOM05D003119 ORTHO05D003559 2.6e-73 279.6 265 50.2
Lsat_1_v5_gn_4_32101 Lactuca sativa HOM05D003119 ORTHO05D003559 3.4e-73 279.3 265 51.3
CANSAT80G1880 Cannabis sativa HOM05D003119 ORTHO05D003559 5.8e-73 278.5 267 49.8
Cpa.g.sc125.32 Carica papaya HOM05D003119 ORTHO05D003559 5.8e-73 278.5 264 49.2
FAN06G3340 Fragaria x ananassa HOM05D003119 ORTHO05D003559 5.8e-73 278.5 265 49.4
vmacro13692 Vaccinium macrocarpon HOM05D003119 ORTHO05D003559 5.8e-73 278.5 264 49.6
HPP92_012079 Vanilla planifolia HOM05D003119 ORTHO05D003559 7.6e-73 278.1 265 50.2
FAN01G1325 Fragaria x ananassa HOM05D003119 ORTHO05D003559 9.9e-73 277.7 266 48.5
FAN01G3156 Fragaria x ananassa HOM05D003119 ORTHO05D003559 9.9e-73 277.7 266 48.5
PSO063G0387 Papaver somniferum HOM05D003119 ORTHO05D003559 9.9e-73 277.7 263 49.8
SalBow5G4976 Salvia bowleyana HOM05D003119 ORTHO05D003559 9.9e-73 277.7 269 50.9
Eucgr.G03358 Eucalyptus grandis HOM05D003119 ORTHO05D003559 3.7e-72 275.8 268 48.9
Potri.009G058100 Populus trichocarpa HOM05D003119 ORTHO05D003559 3.7e-72 275.8 269 49.4
Lj7A574G60 Lonicera japonica HOM05D003119 ORTHO05D003559 4.9e-72 275.4 267 51.7
RcHm_v2.0_Chr1g0317311 Rosa chinensis HOM05D003119 ORTHO05D003559 6.4e-72 275.0 264 49.2
GSVIVG01032165001 Vitis vinifera HOM05D003119 ORTHO05D003559 8.4e-72 274.6 268 48.5
Migut.B01276 Erythranthe guttata HOM05D003119 ORTHO05D003559 1.1e-71 274.2 261 49.0
Duzib133G0610 Durio zibethinus HOM05D003119 ORTHO05D003559 1.4e-71 273.9 264 48.9
Sabra09G0042700 Salix brachista HOM05D003119 ORTHO05D003559 1.4e-71 273.9 265 48.3
PGR031G0137 Punica granatum HOM05D003119 ORTHO05D003559 2.4e-71 273.1 267 50.2
Aqoxy4G00031 Aquilegia oxysepala HOM05D003119 ORTHO05D003559 3.2e-71 272.7 265 49.8
AL6G24300 Arabidopsis lyrata HOM05D003119 ORTHO05D003559 4.1e-71 272.3 266 48.9
MSTRG.20565 Avicennia marina HOM05D003119 ORTHO05D003559 5.4e-71 271.9 271 48.7
TWI60G0203 Tripterygium wilfordii HOM05D003119 ORTHO05D003559 5.4e-71 271.9 265 50.2
HPP92_012082 Vanilla planifolia HOM05D003119 ORTHO05D003559 7.1e-71 271.6 263 50.6
Sp6g30330 Schrenkiella parvula HOM05D003119 ORTHO05D003559 9.2e-71 271.2 266 47.4
Rhsim07G0058300 Rhododendron simsii HOM05D003119 ORTHO05D003559 1.6e-70 270.4 263 47.9
HanXRQChr16g0524981 Helianthus annuus HOM05D003119 ORTHO05D003559 2.1e-70 270.0 263 48.7
DCAR_003225 Daucus carota HOM05D003119 ORTHO05D003559 2.7e-70 269.6 264 48.9
AT5G13690 Arabidopsis thaliana HOM05D003119 ORTHO05D003559 6.0e-70 268.5 266 48.9
Hma1.2p1_1042F.1_g251140 Hydrangea macrophylla HOM05D003119 ORTHO05D003559 6.0e-70 268.5 263 49.4
CSS0027617 Camellia sinensis var. sinensis HOM05D003119 ORTHO05D003559 7.8e-70 268.1 264 47.3
AUR62023087 Chenopodium quinoa HOM05D003119 ORTHO05D003559 7.8e-70 268.1 264 48.1
Thhalv10012727m.g Eutrema salsugineum HOM05D003119 ORTHO05D003559 7.8e-70 268.1 266 48.5
CSS0008603 Camellia sinensis var. sinensis HOM05D003119 ORTHO05D003559 2.3e-69 266.5 264 47.3
ECA234G0904 Erigeron canadensis HOM05D003119 ORTHO05D003559 2.3e-69 266.5 269 49.1
BcaC04g24265 Brassica carinata HOM05D003119 ORTHO05D003559 3.9e-69 265.8 267 48.3
Cfa010802 Carpinus fangiana HOM05D003119 ORTHO05D003559 3.9e-69 265.8 263 48.3
CiPaw.13G007600 Carya illinoinensis HOM05D003119 ORTHO05D003559 3.9e-69 265.8 266 47.7
Carub.0006s1185 Capsella rubella HOM05D003119 ORTHO05D003559 6.6e-69 265.0 266 47.4
Glyma.10G091000 Glycine max HOM05D003119 ORTHO05D003559 8.6e-69 264.6 271 47.6
BcaNung04192 Brassica carinata HOM05D003119 ORTHO05D003559 1.1e-68 264.2 260 48.8
Aa31sc576G10 Aethionema arabicum HOM05D003119 ORTHO05D003559 1.9e-68 263.5 268 46.6
EL10Ac2g04355 Beta vulgaris HOM05D003119 ORTHO05D003559 1.9e-68 263.5 268 48.9
arahy.Tifrunner.gnm1.ann1.X582RR Arachis hypogaea HOM05D003119 ORTHO05D003559 2.5e-68 263.1 267 47.6
Sc10g0000230 Simmondsia chinensis HOM05D003119 ORTHO05D003559 2.5e-68 263.1 265 49.8
arahy.Tifrunner.gnm1.ann1.SMYW0Q Arachis hypogaea HOM05D003119 ORTHO05D003559 7.3e-68 261.5 267 47.6
AUR62009404 Chenopodium quinoa HOM05D003119 ORTHO05D003559 9.6e-68 261.2 257 48.6
CARHR199750 Cardamine hirsuta HOM05D003119 ORTHO05D003559 1.6e-67 260.4 266 47.4
Lj3g0004567 Lotus japonicus HOM05D003119 ORTHO05D003559 2.8e-67 259.6 266 47.0
CiPaw.14G002300 Carya illinoinensis HOM05D003119 ORTHO05D003559 4.7e-67 258.8 269 46.5
Medtr3g032980 Medicago truncatula HOM05D003119 ORTHO05D003559 8.1e-67 258.1 276 44.9
ClCG09G003910 Citrullus lanatus HOM05D003119 ORTHO05D003559 2.4e-66 256.5 263 47.5
Sed0001972 Sechium edule HOM05D003119 ORTHO05D003559 2.4e-66 256.5 263 48.3
Lalb_Chr04g0263891 Lupinus albus HOM05D003119 ORTHO05D003559 3.1e-66 256.1 265 46.0
Ca_14529_v3 Cicer arietinum L. HOM05D003119 ORTHO05D003559 4.0e-66 255.8 268 44.4
VMungo1080G0526 Vigna mungo HOM05D003119 ORTHO05D003559 1.5e-65 253.8 265 46.0
THA.LOC104809848 Tarenaya hassleriana HOM05D003119 ORTHO05D003559 4.4e-65 252.3 270 45.6
QL04p009441 Quercus lobata HOM05D003119 ORTHO05D003559 1.3e-64 250.8 263 45.2
QL04p009277 Quercus lobata HOM05D003119 ORTHO05D003559 6.4e-64 248.4 263 45.2
CsaV3_7G030810 Cucumis sativus L. HOM05D003119 ORTHO05D003559 8.4e-64 248.1 261 46.4
Actinidia04959 Actinidia chinensis HOM05D003119 ORTHO05D003559 3.2e-63 246.1 144 75.0
Phvul.005G023300 Phaseolus vulgaris HOM05D003119 ORTHO05D003559 3.2e-63 246.1 267 46.1
unitig_61.g26361 Utricularia gibba HOM05D003119 ORTHO05D003559 3.2e-63 246.1 263 48.7
AagrBONN_evm.TU.Sc2ySwM_362.673 Anthoceros agrestis HOM05D003119 ORTHO05D003559 7.1e-63 245.0 263 46.4
Ciclev10030724m.g Citrus clementina HOM05D003119 ORTHO05D003559 7.1e-63 245.0 271 44.3
Pp3c17_12040 Physcomitrium patens HOM05D003119 ORTHO05D003559 3.5e-62 242.7 263 44.9
Prupe.5G179500 Prunus persica HOM05D003119 ORTHO05D003559 3.5e-62 242.7 135 80.7
SEGI_39203 Sequoiadendron giganteum HOM05D003119 ORTHO05D003559 8.7e-61 238.0 185 58.4
SMO141G0099 Selaginella moellendorffii HOM05D003119 ORTHO05D003559 9.6e-60 234.6 267 44.2
MELO3C023569.2 Cucumis melo HOM05D003119 ORTHO05D003559 1.6e-59 233.8 261 45.2
Mapoly0144s0027 Marchantia polymorpha HOM05D003119 ORTHO05D003559 2.1e-59 233.4 266 44.4
Psat5g211360 Pisum sativum HOM05D003119 ORTHO05D003559 6.9e-58 228.4 263 41.4
TPR.G28382 Trifolium pratense HOM05D000009 ORTHO05D003559 2.6e-57 226.5 197 51.8
Dinv43414 Davidia involucrata HOM05D003119 ORTHO05D003559 9.9e-57 224.6 191 52.9
SGA_v2.0_scaffold119G32756 Striga asiatica HOM05D003119 ORTHO05D003559 9.9e-57 224.6 265 42.3
Migut.D01907 Erythranthe guttata HOM05D003119 ORTHO05D003559 4.2e-55 219.2 169 66.3
Atru.chr11.2581 Acer truncatum HOM05D003119 ORTHO05D003559 1.3e-45 187.6 194 49.5
Haze_03156 Corylus avellana HOM05D003119 ORTHO05D003559 1.4e-42 177.6 188 47.3
FvH4_7g01470 Fragaria vesca HOM05D003119 ORTHO05D003559 1.5e-33 147.5 166 46.4
Medtr3g435710 Medicago truncatula HOM05D003119 ORTHO05D003559 1.3e-19 101.3 107 42.1
MCO16G065 Micromonas commoda HOM05D003119 ORTHO05D003559 2.0e-09 67.4 121 35.5
Aqoxy7G01930 Aquilegia oxysepala HOM05D000034 ORTHO05D000285 6.5e-08 62.4 46 56.5
Aqoxy7G02664 Aquilegia oxysepala HOM05D000034 ORTHO05D000037 1.5e-07 61.2 41 61.0
Aqoxy5G02986 Aquilegia oxysepala HOM05D007314 ORTHO05D000285 9.4e-07 58.5 44 56.8


User provided reference genes

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