Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g032030 Solanum pennellii HOM05D008788 ORTHO05D012497 1.3e-146 523.1 276 100.0
Solyc03g112960.1 Solanum lycopersicum HOM05D008788 ORTHO05D012497 3.0e-143 511.9 276 97.5
PGSC0003DMG400018146 Solanum tuberosum HOM05D008788 ORTHO05D012497 8.0e-104 380.9 279 74.9
Sopen03g032040 Solanum pennellii HOM05D008788 ORTHO05D012497 7.1e-92 341.3 272 70.6
Solyc03g112970.1 Solanum lycopersicum HOM05D008788 ORTHO05D012497 3.1e-87 325.9 272 68.0
Nitab4.5_0000785g0060 Nicotiana tabacum HOM05D008788 ORTHO05D012497 1.3e-82 310.5 263 67.3
Nitab4.5_0000984g0100 Nicotiana tabacum HOM05D008788 ORTHO05D012497 1.7e-82 310.1 268 66.0
Peaxi162Scf00009g00114 Petunia axillaris HOM05D001734 ORTHO05D003483 1.4e-79 300.4 261 64.4
CAN.G1305.14 Capsicum annuum HOM05D008788 ORTHO05D012497 2.1e-75 286.6 251 61.8
CAN.G1673.12 Capsicum annuum HOM05D008788 ORTHO05D012497 1.2e-67 260.8 228 63.6
Nitab4.5_0000741g0040 Nicotiana tabacum HOM05D008788 ORTHO05D012497 1.6e-43 180.6 249 46.6
Peaxi162Scf00267g00131 Petunia axillaris HOM05D008788 ORTHO05D012497 2.0e-38 163.7 278 42.1
PGSC0003DMG400018147 Solanum tuberosum HOM05D008788 ORTHO05D012497 3.4e-38 162.9 136 75.0
CAN.G1305.15 Capsicum annuum HOM05D008788 ORTHO05D012497 1.7e-37 160.6 121 66.9
Nitab4.5_0000026g0140 Nicotiana tabacum HOM05D008788 ORTHO05D012497 1.3e-32 144.4 238 41.6
Nitab4.5_0000741g0020 Nicotiana tabacum HOM05D008788 ORTHO05D012497 6.5e-29 132.1 226 40.3
Cc04_g17010 Coffea canephora HOM05D008788 ORTHO05D012497 2.2e-24 117.1 284 35.9
Migut.D01837 Erythranthe guttata HOM05D008788 ORTHO05D012497 2.9e-21 106.7 267 33.3
Cc04_g16990 Coffea canephora HOM05D008788 ORTHO05D012497 1.5e-20 104.4 284 32.7
Peaxi162Scf00267g00137 Petunia axillaris HOM05D008788 ORTHO05D012497 5.2e-18 95.9 114 44.7
Oeu060796.1 Olea europaea HOM05D008788 ORTHO05D012497 3.7e-16 89.7 269 32.0
CiPaw.11G042300 Carya illinoinensis HOM05D000036 ORTHO05D009440 4.8e-16 89.4 233 30.5
TAR626G1978 Trochodendron aralioides HOM05D000036 ORTHO05D002265 5.3e-15 85.9 246 27.6
Manes.14G076700 Manihot esculenta HOM05D000281 ORTHO05D009440 4.5e-14 82.8 214 31.8
Sabra01G0081700 Salix brachista HOM05D000281 ORTHO05D009440 4.5e-14 82.8 221 29.4
Cc04_g17040 Coffea canephora HOM05D008788 ORTHO05D017864 1.0e-13 81.6 311 29.6
Potri.001G108200 Populus trichocarpa HOM05D000281 ORTHO05D009440 1.0e-13 81.6 223 30.0
TWI81G0565 Tripterygium wilfordii HOM05D000281 ORTHO05D009440 2.9e-13 80.1 206 29.6
Potri.003G123500 Populus trichocarpa HOM05D000281 ORTHO05D009440 6.5e-13 79.0 230 30.0
MD06G1191000 Malus domestica HOM05D000281 ORTHO05D009440 2.1e-11 73.9 214 29.4
Sabra03G0087100 Salix brachista HOM05D000281 ORTHO05D009440 2.7e-11 73.6 228 30.3
vmacro18768 Vaccinium macrocarpon HOM05D000036 ORTHO05D002265 3.6e-11 73.2 176 30.1
Rhsim08G0244700 Rhododendron simsii HOM05D000036 ORTHO05D002265 4.7e-11 72.8 176 29.5
Nitab4.5_0000026g0150 Nicotiana tabacum HOM05D008788 ORTHO05D012497 6.1e-11 72.4 201 30.3
Thecc.09G068800 Theobroma cacao HOM05D000036 ORTHO05D002265 3.0e-10 70.1 229 23.6
Lj5C112G10 Lonicera japonica HOM05D000036 ORTHO05D009440 1.2e-09 68.2 158 34.2
Nn8g38513 Nelumbo nucifera HOM05D000036 ORTHO05D009440 9.8e-09 65.1 177 29.9
BcaC08g43560 Brassica carinata HOM05D000036 ORTHO05D002265 1.3e-08 64.7 197 26.9
Peaxi162Scf00712g00610 Petunia axillaris HOM05D008788 ORTHO05D012497 1.3e-08 64.7 217 30.0
Sabra03G0043500 Salix brachista HOM05D000036 ORTHO05D002265 2.8e-08 63.5 199 24.6
CSS0042964 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D002265 4.8e-08 62.8 182 28.6
PSO135G1004 Papaver somniferum HOM05D000036 ORTHO05D002265 1.8e-07 60.8 187 23.5
BolC6t36033H Brassica oleracea HOM05D000036 ORTHO05D002265 3.1e-07 60.1 193 25.9
BcaB07g33288 Brassica carinata HOM05D000036 ORTHO05D002265 5.4e-07 59.3 139 28.1
AT1G53840 Arabidopsis thaliana HOM05D000036 ORTHO05D002265 7.0e-07 58.9 139 27.3
AL1G62550 Arabidopsis lyrata HOM05D000036 ORTHO05D002265 1.6e-06 57.8 139 27.3
Migut.D01839 Erythranthe guttata HOM05D018109 ORTHO05D017864 3.5e-06 56.6 282 26.6
BraA06t23309Z Brassica rapa HOM05D000036 ORTHO05D002265 5.9e-06 55.8 195 24.6
CARHR044170 Cardamine hirsuta HOM05D000036 ORTHO05D002265 7.7e-06 55.5 161 26.1


User provided reference genes

Program Settings