Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 8.3e-169 597.0 319 100.0
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 1.2e-164 583.2 319 98.1
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 1.2e-151 540.0 306 94.4
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 3.1e-139 498.8 315 83.8
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 8.9e-139 497.3 306 85.9
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.7e-137 493.0 315 82.5
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 2.4e-112 409.5 316 70.9
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 1.9e-109 399.8 318 67.3
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 6.9e-107 391.3 314 67.8
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 2.0e-106 389.8 314 67.5
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 3.8e-105 385.6 318 65.1
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 8.4e-97 357.8 307 67.4
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 1.4e-96 357.1 303 65.3
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 1.9e-96 356.7 309 66.3
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 1.3e-94 350.5 309 65.0
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 5.1e-94 348.6 352 56.2
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 1.6e-92 343.6 314 62.1
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 1.8e-91 340.1 312 63.1
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 3.8e-89 332.4 337 56.1
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 9.3e-88 327.8 319 56.4
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 1.3e-84 317.4 306 58.8
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 4.1e-83 312.4 366 50.8
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 1.3e-81 307.4 305 58.4
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 1.7e-81 307.0 312 56.1
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 1.4e-80 303.9 310 54.8
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.4e-80 303.9 314 57.0
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 2.5e-80 303.1 317 54.9
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 2.5e-80 303.1 309 56.3
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 7.2e-80 301.6 308 53.2
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 7.9e-79 298.1 330 53.0
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 1.4e-78 297.4 332 51.8
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 1.5e-77 293.9 314 53.5
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 1.5e-77 293.9 304 54.3
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 2.5e-77 293.1 315 54.0
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 3.3e-77 292.7 340 51.5
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 5.7e-77 292.0 301 52.8
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 2.2e-76 290.0 314 51.9
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 6.3e-76 288.5 306 55.6
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 9.1e-75 284.6 347 50.1
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 9.1e-75 284.6 314 51.6
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 1.5e-74 283.9 293 57.3
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 2.0e-74 283.5 314 52.5
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 2.0e-74 283.5 317 52.1
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 1.3e-73 280.8 313 51.4
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 2.9e-73 279.6 305 53.1
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 8.5e-73 278.1 305 54.4
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 3.2e-72 276.2 333 49.8
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 5.5e-72 275.4 318 50.6
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 1.2e-71 274.2 295 54.6
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 4.7e-71 272.3 302 52.6
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 6.1e-71 271.9 341 48.7
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 1.8e-70 270.4 325 51.1
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 3.9e-70 269.2 340 47.4
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 6.7e-70 268.5 229 62.4
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 5.7e-69 265.4 318 48.7
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 9.7e-69 264.6 335 49.9
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 2.2e-68 263.5 315 49.2
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 8.2e-68 261.5 308 50.0
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 1.4e-67 260.8 314 49.0
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.4e-67 260.0 311 48.9
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 3.1e-67 259.6 304 50.3
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 5.3e-67 258.8 318 48.4
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 1.6e-66 257.3 309 49.5
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 2.0e-66 256.9 306 51.0
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 2.6e-66 256.5 321 47.4
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 2.6e-66 256.5 321 46.7
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 1.0e-65 254.6 260 56.5
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 1.3e-65 254.2 299 48.8
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 1.7e-65 253.8 306 49.7
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 2.9e-65 253.1 314 47.5
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 5.0e-65 252.3 310 47.7
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 6.5e-65 251.9 309 48.5
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 6.5e-65 251.9 304 49.7
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 1.1e-64 251.1 298 47.7
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 1.9e-64 250.4 302 47.7
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 1.9e-64 250.4 318 47.2
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 7.2e-64 248.4 309 47.9
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 2.1e-63 246.9 300 48.3
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 4.7e-63 245.7 305 47.5
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 6.1e-63 245.4 305 47.9
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 6.1e-63 245.4 297 45.8
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 8.0e-63 245.0 300 48.7
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 1.0e-62 244.6 308 46.1
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 1.0e-62 244.6 318 47.5
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 1.4e-62 244.2 308 46.8
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 3.0e-62 243.0 351 45.6
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 5.2e-62 242.3 230 56.1
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 2.6e-61 240.0 289 49.1
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 2.6e-61 240.0 308 49.0
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 5.7e-61 238.8 284 48.6
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 3.7e-60 236.1 295 49.5
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 1.4e-59 234.2 314 46.8
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 2.4e-59 233.4 350 43.1
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 5.3e-59 232.3 323 43.0
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 3.5e-58 229.6 230 52.2
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 5.9e-58 228.8 254 49.2
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 5.9e-58 228.8 239 55.2
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.3e-57 227.6 251 50.2
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 1.7e-57 227.3 313 43.8
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 1.7e-57 227.3 238 55.0
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 2.9e-57 226.5 313 43.5
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 2.9e-57 226.5 318 43.4
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 1.1e-56 224.6 315 43.2
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 1.1e-56 224.6 319 43.3
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.1e-56 224.6 258 49.6
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 1.6e-55 220.7 316 43.4
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 8.0e-55 218.4 321 40.5
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 1.0e-54 218.0 313 41.5
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 1.4e-54 217.6 313 40.6
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 1.8e-54 217.2 224 55.4
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 2.3e-54 216.9 310 40.6
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 4.0e-54 216.1 310 40.6
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 5.2e-54 215.7 313 40.9
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 5.2e-54 215.7 300 45.3
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 4.8e-52 209.1 189 61.4
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 1.8e-51 207.2 311 40.2
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 2.4e-51 206.8 311 39.9
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 4.1e-51 206.1 293 43.0
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 2.0e-50 203.8 279 43.4
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 1.0e-49 201.4 305 39.0
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 2.5e-48 196.8 297 41.1
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 1.6e-47 194.1 194 52.1
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 3.6e-47 193.0 289 43.6
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 1.2e-45 188.0 298 40.3
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 2.6e-45 186.8 308 40.6
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 1.1e-43 181.4 250 46.8
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 1.0e-41 174.9 295 39.0
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 1.0e-38 164.9 226 43.8
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 7.5e-37 158.7 306 35.9
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 3.2e-35 153.3 324 34.9
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 8.6e-33 145.2 228 37.3
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 2.5e-32 143.7 223 43.9
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.5e-32 143.7 137 51.8
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 8.0e-31 138.7 260 33.8
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 1.4e-30 137.9 221 38.5
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 1.7e-25 120.9 152 40.8
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 3.1e-22 110.2 149 41.6
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 1.3e-20 104.8 192 35.4
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 1.7e-20 104.4 149 41.6
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 4.9e-20 102.8 232 31.9
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 2.4e-19 100.5 233 32.2
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 5.4e-19 99.4 195 35.4
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 3.5e-18 96.7 235 31.9
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 2.8e-15 87.0 99 54.5
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 3.6e-15 86.7 65 64.6
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 1.1e-14 85.1 180 32.8
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 2.6e-13 80.5 186 29.6
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 2.9e-12 77.0 127 31.5
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 1.2e-10 71.6 127 32.3
PRCOL_00005442 Prasinoderma coloniale HOM05D004617 ORTHO05D005531 1.7e-09 67.8 110 36.4
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 1.5e-08 64.7 217 26.3
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 3.3e-08 63.5 83 45.8
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 9.6e-08 62.0 100 41.0


User provided reference genes

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