Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 0.0e+00 1207.2 647 100.0
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 0.0e+00 1138.3 647 95.7
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 2.9e-290 1001.5 658 84.2
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 3.0e-287 991.5 660 84.1
Solyc03g112110.1 Solanum lycopersicum HOM05D007670 ORTHO05D009646 2.8e-184 649.4 370 96.8
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 8.3e-176 621.3 665 54.9
SalBow5G5044 Salvia bowleyana HOM05D007670 ORTHO05D009646 9.2e-159 564.7 680 54.9
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 2.7e-158 563.1 652 56.9
SalBow5G0325 Salvia bowleyana HOM05D007670 ORTHO05D009646 6.0e-158 562.0 681 54.6
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 5.6e-148 528.9 668 53.7
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 5.6e-148 528.9 654 54.1
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 1.1e-146 524.6 665 51.1
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 1.1e-146 524.6 630 56.5
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 8.9e-146 521.5 675 52.9
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 1.2e-145 521.2 660 52.1
Peaxi162Scf00089g01229 Petunia axillaris HOM05D007670 ORTHO05D009646 2.2e-144 516.9 380 82.6
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 1.2e-142 511.1 673 53.0
Solyc03g112120.3 Solanum lycopersicum HOM05D007670 ORTHO05D009646 6.6e-141 505.4 274 96.4
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 4.3e-140 502.7 592 55.9
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 1.4e-138 497.7 644 52.8
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 3.1e-138 496.5 667 50.2
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 1.5e-137 494.2 675 47.9
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 1.7e-136 490.7 677 48.2
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 4.9e-136 489.2 678 48.7
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 4.9e-136 489.2 693 47.5
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 6.4e-136 488.8 707 48.7
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 1.9e-135 487.3 646 48.5
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 5.4e-135 485.7 653 48.7
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 4.6e-134 482.6 723 47.7
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 5.1e-133 479.2 671 48.6
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 1.5e-132 477.6 548 56.0
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 3.3e-132 476.5 659 53.4
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 7.3e-132 475.3 702 47.2
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.6e-131 474.2 688 46.4
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 3.6e-131 473.0 687 46.4
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 4.8e-131 472.6 693 46.5
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 3.1e-130 469.9 686 48.3
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 5.8e-129 465.7 601 48.9
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 2.9e-128 463.4 672 48.2
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 4.9e-128 462.6 631 49.6
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 6.4e-128 462.2 696 46.7
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 2.4e-127 460.3 655 47.3
Gorai.003G106900 Gossypium raimondii HOM05D007670 ORTHO05D009646 4.2e-127 459.5 571 53.1
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 5.4e-127 459.1 645 48.5
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 1.8e-125 454.1 571 52.9
Peaxi162Scf00089g01230 Petunia axillaris HOM05D007670 ORTHO05D009646 4.3e-124 449.5 275 87.3
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 2.8e-123 446.8 655 44.9
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 7.6e-121 438.7 663 47.5
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 4.9e-120 436.0 608 46.4
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 2.1e-118 430.6 573 48.0
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 6.0e-118 429.1 649 44.5
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 1.3e-112 411.4 631 45.5
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 2.5e-111 407.1 640 43.3
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 3.2e-111 406.8 621 44.4
Hma1.2p1_1092F.1_g255930 Hydrangea macrophylla HOM05D007670 ORTHO05D009646 1.8e-109 401.0 443 57.8
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 8.5e-104 382.1 432 56.7
HanXRQChr05g0156201 Helianthus annuus HOM05D007670 ORTHO05D009646 7.2e-103 379.0 546 49.3
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 5.1e-101 372.9 438 56.4
Dinv20593 Davidia involucrata HOM05D007670 ORTHO05D009646 3.8e-96 356.7 457 56.7
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 4.2e-95 353.2 570 45.3
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 1.3e-88 331.6 300 63.0
Glyma.17G124800 Glycine max HOM05D007670 ORTHO05D009646 1.6e-73 281.6 432 45.1
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 7.7e-73 279.3 298 54.7
QL10p006759 Quercus lobata HOM05D007670 ORTHO05D009646 1.9e-71 274.6 488 41.8
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 5.5e-71 273.1 542 39.9
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 5.9e-65 253.1 557 35.9
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 1.9e-63 248.1 635 35.4
Cpa.g.sc159.12 Carica papaya HOM05D007670 ORTHO05D009646 5.5e-63 246.5 677 34.9
Actinidia24601 Actinidia chinensis HOM05D007670 ORTHO05D009646 4.4e-60 236.9 238 56.7
Glyma.17G124700 Glycine max HOM05D007670 ORTHO05D009646 5.4e-50 203.4 216 55.1
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 1.0e-48 199.1 229 49.3
TAR629G0999 Trochodendron aralioides HOM05D007670 ORTHO05D009646 3.7e-43 180.6 214 51.4
Zm00001eb143920 Zea mays HOM05D007670 ORTHO05D009646 5.4e-34 150.2 312 36.9
Os01g0909300 Oryza sativa ssp. japonica HOM05D007670 ORTHO05D009646 3.9e-32 144.1 164 48.8
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.1e-31 142.5 234 38.0
Sabra15G0107400 Salix brachista HOM05D007670 ORTHO05D009646 1.6e-30 138.7 507 33.9
Zm00001eb393770 Zea mays HOM05D007670 ORTHO05D009646 2.4e-29 134.8 162 47.5
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 6.8e-29 133.3 235 35.7
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.2e-26 124.4 229 34.1
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 4.6e-25 120.6 292 29.8
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 4.6e-25 120.6 292 29.8
QL10p006748 Quercus lobata HOM05D007670 ORTHO05D009646 6.0e-25 120.2 140 53.6
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.9e-24 117.5 305 31.8
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 9.6e-23 112.8 222 37.4
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.6e-20 103.2 294 28.9
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 7.1e-18 96.7 463 28.3
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 6.6e-16 90.1 225 31.1
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 4.5e-12 77.4 251 29.1
CsaV3_1G008900 Cucumis sativus L. HOM05D007670 ORTHO05D009646 2.2e-11 75.1 138 40.6
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 2.4e-10 71.6 223 26.9
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 5.5e-10 70.5 265 26.4
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 7.1e-10 70.1 243 27.2
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 1.6e-09 68.9 232 25.9
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 2.1e-09 68.6 233 27.9
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 2.7e-09 68.2 266 27.1
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 3.5e-09 67.8 233 27.5
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 4.6e-09 67.4 245 25.7
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 6.0e-09 67.0 261 25.3
MELO3C031542.2 Cucumis melo HOM05D007670 ORTHO05D009646 6.0e-09 67.0 103 41.7
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 7.9e-09 66.6 233 27.5
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 1.0e-08 66.2 248 27.0
Aqoxy3G00774 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 1.8e-08 65.5 147 32.7
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 1.8e-08 65.5 233 27.5
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 1.8e-08 65.5 203 28.6
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 1.8e-08 65.5 203 28.6
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 2.3e-08 65.1 246 26.4
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 3.0e-08 64.7 214 25.7
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 3.0e-08 64.7 205 27.3
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 3.0e-08 64.7 288 24.3
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 3.9e-08 64.3 265 25.3
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 3.9e-08 64.3 201 26.9
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 3.9e-08 64.3 266 26.3
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 5.1e-08 63.9 211 26.5
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 6.7e-08 63.5 201 27.9
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 6.7e-08 63.5 271 25.5
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 1.5e-07 62.4 212 27.4
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 1.9e-07 62.0 254 26.4
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 1.9e-07 62.0 240 27.1
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 1.9e-07 62.0 253 26.9
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 2.5e-07 61.6 202 27.7
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 2.5e-07 61.6 206 27.7
Actinidia36758 Actinidia chinensis HOM05D007670 ORTHO05D009646 3.3e-07 61.2 78 48.7
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 3.3e-07 61.2 197 25.9
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 4.3e-07 60.8 247 26.7
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 4.3e-07 60.8 270 27.0
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 7.4e-07 60.1 202 25.7
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 7.4e-07 60.1 272 25.0
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 9.6e-07 59.7 221 25.3
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 1.3e-06 59.3 265 24.9
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 1.3e-06 59.3 282 23.4
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 1.3e-06 59.3 248 27.0
Cc09_g07320 Coffea canephora HOM05D007837 ORTHO05D009965 1.6e-06 58.9 265 25.3
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 2.8e-06 58.2 266 24.8
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 3.7e-06 57.8 375 22.4
RcHm_v2.0_Chr5g0018641 Rosa chinensis HOM05D007837 ORTHO05D009965 3.7e-06 57.8 222 25.2
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 4.8e-06 57.4 255 24.7
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 6.2e-06 57.0 363 23.4
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 6.2e-06 57.0 212 25.5
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 6.2e-06 57.0 312 22.1


User provided reference genes

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