Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g030200 Solanum pennellii HOM05D005518 ORTHO05D001269 2.3e-291 1005.0 558 100.0
Solyc03g111030.3 Solanum lycopersicum HOM05D005518 ORTHO05D001269 1.7e-281 972.2 558 97.5
PGSC0003DMG400015252 Solanum tuberosum HOM05D005518 ORTHO05D001269 9.4e-277 956.4 558 92.5
CAN.G352.49 Capsicum annuum HOM05D005518 ORTHO05D001269 3.5e-239 831.6 544 83.8
Nitab4.5_0005327g0060 Nicotiana tabacum HOM05D005518 ORTHO05D001269 1.2e-228 796.6 561 79.0
Nitab4.5_0001664g0120 Nicotiana tabacum HOM05D005518 ORTHO05D001269 2.3e-227 792.3 559 81.0
Peaxi162Scf00089g00324 Petunia axillaris HOM05D005518 ORTHO05D001269 7.6e-194 681.0 584 68.3
Dinv04847 Davidia involucrata HOM05D005518 ORTHO05D001269 3.0e-134 483.0 590 53.4
Migut.D01234 Erythranthe guttata HOM05D005518 ORTHO05D001269 2.7e-122 443.4 587 49.2
Dinv11102 Davidia involucrata HOM05D005518 ORTHO05D001269 1.4e-118 431.0 591 50.8
GSVIVG01003640001 Vitis vinifera HOM05D005518 ORTHO05D001269 4.9e-116 422.5 592 48.6
Actinidia16187 Actinidia chinensis HOM05D005518 ORTHO05D001269 2.7e-114 416.8 588 48.8
Actinidia36793 Actinidia chinensis HOM05D005518 ORTHO05D001269 6.2e-111 405.6 593 48.7
CSS0041106 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 1.2e-109 401.4 593 48.6
MSTRG.9316 Avicennia marina HOM05D005518 ORTHO05D001269 4.4e-109 399.4 565 47.8
Rhsim12G0172400 Rhododendron simsii HOM05D005518 ORTHO05D001269 3.5e-106 389.8 598 51.0
CANSAT80G2082 Cannabis sativa HOM05D005518 ORTHO05D001269 7.8e-106 388.7 606 45.2
Cc04_g10180 Coffea canephora HOM05D005518 ORTHO05D001269 1.0e-105 388.3 624 46.3
TAR626G1948 Trochodendron aralioides HOM05D005518 ORTHO05D001269 1.7e-105 387.5 610 46.1
MSTRG.22916 Avicennia marina HOM05D005518 ORTHO05D001269 8.6e-105 385.2 600 45.5
SGA_v2.0_scaffold37G14614 Striga asiatica HOM05D005518 ORTHO05D001269 1.5e-104 384.4 593 46.4
Sabra12G0068800 Salix brachista HOM05D005518 ORTHO05D001269 4.3e-104 382.9 597 45.9
CiPaw.12G036400 Carya illinoinensis HOM05D005518 ORTHO05D001269 3.6e-103 379.8 602 44.9
Potri.012G094200 Populus trichocarpa HOM05D005518 ORTHO05D001269 8.1e-103 378.6 593 47.2
Eucgr.K02750 Eucalyptus grandis HOM05D005518 ORTHO05D001269 2.2e-100 370.5 591 43.8
Cpa.g.sc4.97 Carica papaya HOM05D005518 ORTHO05D001269 1.4e-99 367.9 603 45.3
vmacro16655 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 2.4e-99 367.1 577 49.4
RcHm_v2.0_Chr7g0190821 Rosa chinensis HOM05D005518 ORTHO05D001269 4.1e-99 366.3 605 44.5
DCAR_007472 Daucus carota HOM05D005518 ORTHO05D001269 7.1e-99 365.5 595 45.2
Potri.015G091500 Populus trichocarpa HOM05D005518 ORTHO05D001269 7.1e-99 365.5 591 44.7
Sabra15G0113400 Salix brachista HOM05D005518 ORTHO05D001269 7.1e-99 365.5 612 43.5
Nn1g07622 Nelumbo nucifera HOM05D005518 ORTHO05D001269 3.5e-98 363.2 623 46.4
Ciclev10019441m.g Citrus clementina HOM05D005518 ORTHO05D001269 4.6e-98 362.8 599 46.6
QL10p004779 Quercus lobata HOM05D005518 ORTHO05D001269 7.8e-98 362.1 609 45.0
Prupe.5G155700 Prunus persica HOM05D005518 ORTHO05D001269 1.0e-97 361.7 606 44.4
FAN13G1318 Fragaria x ananassa HOM05D005518 ORTHO05D001269 1.1e-96 358.2 607 44.2
Thecc.03G124400 Theobroma cacao HOM05D005518 ORTHO05D001269 2.5e-96 357.1 602 43.9
FvH4_5g07650 Fragaria vesca HOM05D005518 ORTHO05D001269 3.3e-96 356.7 607 44.5
Oeu055998.1 Olea europaea HOM05D005518 ORTHO05D001269 3.3e-96 356.7 592 44.1
FAN04G1413 Fragaria x ananassa HOM05D005518 ORTHO05D001269 1.6e-95 354.4 605 43.6
FAN08G0706 Fragaria x ananassa HOM05D005518 ORTHO05D001269 1.6e-95 354.4 607 44.0
FAN25G1054 Fragaria x ananassa HOM05D005518 ORTHO05D001269 2.8e-95 353.6 600 44.0
Duzib205G1346 Durio zibethinus HOM05D005518 ORTHO05D001269 1.4e-94 351.3 599 45.1
Atru.chr9.1022 Acer truncatum HOM05D005518 ORTHO05D001269 1.8e-94 350.9 608 47.9
PGR044G0025 Punica granatum HOM05D005518 ORTHO05D001269 1.8e-94 350.9 600 43.8
RcHm_v2.0_Chr1g0380401 Rosa chinensis HOM05D005518 ORTHO05D001269 8.9e-94 348.6 606 43.4
CiPaw.11G011000 Carya illinoinensis HOM05D005518 ORTHO05D001269 9.3e-91 338.6 597 42.2
Gohir.D09G246400 Gossypium hirsutum HOM05D005518 ORTHO05D001269 1.6e-90 337.8 608 43.8
Lj5C99T12 Lonicera japonica HOM05D005518 ORTHO05D001269 6.0e-90 335.9 616 45.1
Gorai.006G270900 Gossypium raimondii HOM05D005518 ORTHO05D001269 1.0e-89 335.1 604 44.0
Sed0017473 Sechium edule HOM05D005518 ORTHO05D001269 1.0e-89 335.1 601 42.3
TWI14G0969 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 1.0e-89 335.1 604 43.2
CsaV3_1G009430 Cucumis sativus L. HOM05D005518 ORTHO05D001269 3.9e-89 333.2 598 41.6
ClCG03G003580 Citrullus lanatus HOM05D005518 ORTHO05D001269 1.1e-88 331.6 631 40.3
Sed0015656 Sechium edule HOM05D005518 ORTHO05D001269 1.5e-88 331.3 604 41.1
Gohir.A09G245800 Gossypium hirsutum HOM05D005518 ORTHO05D001269 2.5e-88 330.5 604 43.9
Gohir.A11G035500 Gossypium hirsutum HOM05D005518 ORTHO05D001269 2.5e-88 330.5 609 42.5
COL.COLO4_16831 Corchorus olitorius HOM05D005518 ORTHO05D001269 4.8e-87 326.2 599 42.4
Gorai.007G042000 Gossypium raimondii HOM05D005518 ORTHO05D001269 6.2e-87 325.9 604 42.1
Gohir.D11G039100 Gossypium hirsutum HOM05D005518 ORTHO05D001269 1.4e-86 324.7 604 41.9
Lsat_1_v5_gn_1_29580 Lactuca sativa HOM05D005518 ORTHO05D001269 6.9e-86 322.4 612 43.5
Lalb_Chr08g0237001 Lupinus albus HOM05D005518 ORTHO05D001269 1.1e-83 315.1 589 42.3
MELO3C002344.2 Cucumis melo HOM05D005518 ORTHO05D001269 2.4e-83 313.9 599 42.4
Lj9A476T55 Lonicera japonica HOM05D005518 ORTHO05D001269 2.7e-82 310.5 561 43.1
HanXRQChr02g0035181 Helianthus annuus HOM05D005518 ORTHO05D001269 1.0e-81 308.5 614 42.5
FAN18G1514 Fragaria x ananassa HOM05D000557 ORTHO05D001269 1.7e-81 307.8 522 45.0
MBI14_g12740_MAGBIO Magnolia biondii HOM05D005518 ORTHO05D001269 5.1e-81 306.2 645 40.0
TWI23G0187 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 8.7e-81 305.4 622 39.4
SalBow1G4741 Salvia bowleyana HOM05D005518 ORTHO05D001269 1.5e-80 304.7 573 41.4
Manes.06G116500 Manihot esculenta HOM05D005518 ORTHO05D001269 4.3e-80 303.1 603 40.0
Lj1g0006481 Lotus japonicus HOM05D005518 ORTHO05D001269 9.6e-80 302.0 595 42.9
Glyma.06G172500 Glycine max HOM05D005518 ORTHO05D001269 9.0e-78 295.4 595 41.7
PSO782G5170 Papaver somniferum HOM05D005518 ORTHO05D001269 2.6e-77 293.9 624 41.7
arahy.Tifrunner.gnm1.ann1.QFFJ7D Arachis hypogaea HOM05D005518 ORTHO05D001269 1.3e-76 291.6 593 40.5
Glyma.04G193600 Glycine max HOM05D005518 ORTHO05D001269 1.3e-76 291.6 568 42.8
ECA247G0960 Erigeron canadensis HOM05D005518 ORTHO05D001269 3.8e-76 290.0 663 40.3
Haze_07258 Corylus avellana HOM05D005518 ORTHO05D001269 1.1e-75 288.5 536 41.6
Lalb_Chr11g0069691 Lupinus albus HOM05D005518 ORTHO05D001269 1.9e-75 287.7 583 41.0
arahy.Tifrunner.gnm1.ann1.P5I184 Arachis hypogaea HOM05D001134 ORTHO05D001269 5.5e-75 286.2 558 42.1
TPR.G26139 Trifolium pratense HOM05D005518 ORTHO05D001269 7.9e-74 282.3 603 42.0
HanXRQChr04g0100301 Helianthus annuus HOM05D005518 ORTHO05D001269 1.6e-71 274.6 624 39.1
ATR0751G048 Amborella trichopoda HOM05D005518 ORTHO05D001269 3.7e-71 273.5 654 38.7
Manes.14G054500 Manihot esculenta HOM05D005518 ORTHO05D001269 1.8e-70 271.2 586 38.1
Oeu006376.1 Olea europaea HOM05D005518 ORTHO05D001269 1.8e-70 271.2 354 48.6
CDE06G2288 Ceratophyllum demersum HOM05D005518 ORTHO05D005913 3.1e-70 270.4 587 37.8
Oeu023474.2 Olea europaea HOM05D005518 ORTHO05D001269 4.0e-70 270.0 597 38.5
Duzib084G0018 Durio zibethinus HOM05D005518 ORTHO05D001269 6.9e-70 269.2 741 35.2
Hund02416 Selenicereus undatus HOM05D005518 ORTHO05D001269 6.5e-68 262.7 576 41.8
PSO063G3591 Papaver somniferum HOM05D005518 ORTHO05D001269 7.1e-67 259.2 602 38.7
Phvul.009G168300 Phaseolus vulgaris HOM05D005518 ORTHO05D001269 1.2e-66 258.5 598 40.0
Psat5g139920 Pisum sativum HOM05D005518 ORTHO05D001269 6.0e-66 256.1 585 38.8
MD06G1148700 Malus domestica HOM05D005518 ORTHO05D001269 6.7e-65 252.7 575 37.4
Medtr3g075070 Medicago truncatula HOM05D005518 ORTHO05D001269 7.4e-64 249.2 597 39.5
Aqoxy4G02270 Aquilegia oxysepala HOM05D005518 ORTHO05D001269 2.4e-62 244.2 608 36.5
Sc04g0000850 Simmondsia chinensis HOM05D005518 ORTHO05D001269 3.4e-61 240.4 574 39.0
CDE03G0480 Ceratophyllum demersum HOM05D005518 ORTHO05D001269 4.5e-61 240.0 588 36.4
THA.LOC104825006 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 1.3e-60 238.4 596 37.2
Os06g0609800 Oryza sativa ssp. japonica HOM05D005518 ORTHO05D001269 3.8e-60 236.9 552 36.4
AUR62029840 Chenopodium quinoa HOM05D005518 ORTHO05D001269 5.0e-60 236.5 623 37.1
AUR62025869 Chenopodium quinoa HOM05D005518 ORTHO05D001269 1.2e-58 231.9 606 36.3
AT5G50350 Arabidopsis thaliana HOM05D005518 ORTHO05D001269 1.3e-57 228.4 628 34.9
VMungo1309G2768 Vigna mungo HOM05D005518 ORTHO05D001269 8.7e-57 225.7 594 39.1
CARHR258130 Cardamine hirsuta HOM05D005518 ORTHO05D001269 9.7e-56 222.2 602 34.9
AL8G24460 Arabidopsis lyrata HOM05D005518 ORTHO05D001269 6.3e-55 219.5 617 35.0
A03p27800 Brassica napus HOM05D005518 ORTHO05D001269 2.0e-53 214.5 588 36.4
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 2.2e-52 211.1 586 37.4
Zm00001eb388520 Zea mays HOM05D005518 ORTHO05D001269 2.9e-52 210.7 583 32.9
THA.LOC104803143 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 3.8e-52 210.3 658 34.7
Sp6g12480 Schrenkiella parvula HOM05D005518 ORTHO05D001269 2.5e-51 207.6 634 34.7
CSS0040133 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 1.2e-50 205.3 235 52.8
Carub.0008s1043 Capsella rubella HOM05D005518 ORTHO05D001269 2.1e-50 204.5 652 32.8
BraA03t11991Z Brassica rapa HOM05D005518 ORTHO05D001269 6.1e-50 203.0 594 36.4
Thhalv10013029m.g Eutrema salsugineum HOM05D005518 ORTHO05D001269 7.9e-50 202.6 609 34.5
C03p33530 Brassica napus HOM05D005518 ORTHO05D001269 2.3e-49 201.1 588 36.9
BolC3t15674H Brassica oleracea HOM05D005518 ORTHO05D001269 2.3e-49 201.1 588 36.6
BcaC01g04812 Brassica carinata HOM05D005518 ORTHO05D001269 6.7e-49 199.5 590 37.1
EL10As4g23466 Beta vulgaris HOM05D005518 ORTHO05D001269 2.0e-48 198.0 590 33.9
MD14G1162500 Malus domestica HOM05D005518 ORTHO05D001269 2.2e-47 194.5 348 44.8
Migut.I00490 Erythranthe guttata HOM05D005518 ORTHO05D001269 2.8e-47 194.1 527 35.7
CSS0031701 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 6.3e-47 193.0 348 45.1
unitig_22.g5764 Utricularia gibba HOM05D005518 ORTHO05D001269 8.2e-47 192.6 577 33.1
vmacro16713 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 9.1e-46 189.1 234 53.8
Aa31LG3G5820 Aethionema arabicum HOM05D005518 ORTHO05D001269 2.6e-45 187.6 649 31.7
Duzib068G1391 Durio zibethinus HOM05D005518 ORTHO05D001269 3.6e-42 177.2 261 48.7
Actinidia25603 Actinidia chinensis HOM05D005518 ORTHO05D001269 6.7e-41 172.9 513 33.7
Actinidia08857 Actinidia chinensis HOM05D005518 ORTHO05D001269 1.0e-36 159.1 300 42.7
Sc22g0004150 Simmondsia chinensis HOM05D005518 ORTHO05D001269 1.1e-35 155.6 309 37.5
vmacro16712 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 3.2e-35 154.1 269 48.3
MD14G1162600 Malus domestica HOM05D005518 ORTHO05D001269 2.3e-33 147.9 202 45.5
Ca_25438_v3 Cicer arietinum L. HOM05D005518 ORTHO05D001269 7.2e-27 126.3 199 39.7
HPP92_027039 Vanilla planifolia HOM05D005518 ORTHO05D001269 8.0e-26 122.9 313 37.4
SEGI_40207 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 7.2e-19 99.8 643 26.7
SEGI_11479 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 2.7e-18 97.8 365 28.5
Ca_16087_v3 Cicer arietinum L. HOM05D005518 ORTHO05D001269 3.6e-18 97.4 176 46.0
ATR0307G001 Amborella trichopoda HOM05D007286 ORTHO05D008955 2.3e-17 94.7 623 27.9
TAR555G0002 Trochodendron aralioides HOM05D007286 ORTHO05D008955 2.2e-15 88.2 621 25.0
MBI19_g06405_MAGBIO Magnolia biondii HOM05D007286 ORTHO05D008955 2.9e-12 77.8 572 27.6
QL04p050581 Quercus lobata HOM05D007286 ORTHO05D008955 2.9e-12 77.8 622 24.8
CANSAT56G1680 Cannabis sativa HOM05D007286 ORTHO05D008955 4.3e-11 73.9 496 24.8
CSS0007228 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 5.6e-11 73.6 609 25.6
CSS0046865 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D008955 5.6e-11 73.6 609 25.6
Sabra08G0007300 Salix brachista HOM05D007286 ORTHO05D008955 5.6e-11 73.6 346 27.2
CANSAT56G4194 Cannabis sativa HOM05D007286 ORTHO05D008955 1.6e-10 72.0 496 24.8
Nn7g37274 Nelumbo nucifera HOM05D007286 ORTHO05D008955 3.6e-10 70.9 522 25.3
GSVIVG01027344001 Vitis vinifera HOM05D007286 ORTHO05D008955 4.7e-10 70.5 608 27.1
Phvul.011G187500 Phaseolus vulgaris HOM05D007286 ORTHO05D008955 1.0e-09 69.3 462 24.9
Sabra10G0192500 Salix brachista HOM05D007286 ORTHO05D008955 1.0e-09 69.3 435 25.1
TWI38G1128 Tripterygium wilfordii HOM05D007286 ORTHO05D008955 1.4e-09 68.9 552 24.6
Manes.10G063001 Manihot esculenta HOM05D000188 ORTHO05D000362 3.0e-09 67.8 441 25.2
Oeu013048.2 Olea europaea HOM05D007286 ORTHO05D008955 3.0e-09 67.8 262 28.6
Cfa018874 Carpinus fangiana HOM05D005518 ORTHO05D001269 4.0e-09 67.4 95 49.5
Cfa010442 Carpinus fangiana HOM05D007286 ORTHO05D008955 8.9e-09 66.2 468 26.5
Prupe.2G060300 Prunus persica HOM05D007286 ORTHO05D008955 1.2e-08 65.9 447 23.5
Dinv20486 Davidia involucrata HOM05D007286 ORTHO05D008955 1.5e-08 65.5 349 27.2
arahy.Tifrunner.gnm1.ann1.QJ9WGP Arachis hypogaea HOM05D001134 ORTHO05D001035 2.6e-08 64.7 85 48.2
Potri.010G247100 Populus trichocarpa HOM05D007286 ORTHO05D008955 2.6e-08 64.7 443 24.6
Ciclev10000662m.g Citrus clementina HOM05D007286 ORTHO05D008955 3.4e-08 64.3 499 24.6
RcHm_v2.0_Chr1g0331161 Rosa chinensis HOM05D007286 ORTHO05D008955 7.5e-08 63.2 497 24.1
FAN06G0358 Fragaria x ananassa HOM05D007286 ORTHO05D008955 9.8e-08 62.8 497 25.4
Rhsim07G0072400 Rhododendron simsii HOM05D007286 ORTHO05D008955 9.8e-08 62.8 449 26.5
PSO339G4644 Papaver somniferum HOM05D007286 ORTHO05D008955 1.3e-07 62.4 406 26.4
FAN03G1022 Fragaria x ananassa HOM05D007286 ORTHO05D008955 1.7e-07 62.0 497 25.2
Psat4g141960 Pisum sativum HOM05D007286 ORTHO05D008955 1.7e-07 62.0 448 23.9
Lsat_1_v5_gn_5_41960 Lactuca sativa HOM05D007286 ORTHO05D008955 4.9e-07 60.5 501 24.6
FAN10G3167 Fragaria x ananassa HOM05D007286 ORTHO05D008955 8.3e-07 59.7 496 24.6
Sc22g0004140 Simmondsia chinensis HOM05D005518 ORTHO05D001269 8.3e-07 59.7 105 44.8
Eucgr.G02637 Eucalyptus grandis HOM05D007286 ORTHO05D008955 1.1e-06 59.3 535 25.4
FvH4_7g04960 Fragaria vesca HOM05D007286 ORTHO05D008955 1.1e-06 59.3 497 25.2
MSTRG.20479 Avicennia marina HOM05D007286 ORTHO05D008955 1.4e-06 58.9 259 26.3
ECA246G2791 Erigeron canadensis HOM05D000076 ORTHO05D002730 1.4e-06 58.9 336 25.9
Glyma.08G227900 Glycine max HOM05D007286 ORTHO05D008955 2.4e-06 58.2 445 23.4
Actinidia12136 Actinidia chinensis HOM05D007286 ORTHO05D008955 3.2e-06 57.8 461 24.1
CAN.G134.51 Capsicum annuum HOM05D007286 ORTHO05D008955 3.2e-06 57.8 504 24.4
Gohir.A05G285500 Gossypium hirsutum HOM05D007286 ORTHO05D008955 3.2e-06 57.8 436 24.8
Gorai.009G301600 Gossypium raimondii HOM05D007286 ORTHO05D008955 3.2e-06 57.8 462 23.4
MD02G1265200 Malus domestica HOM05D007286 ORTHO05D008955 3.2e-06 57.8 475 22.7
Gohir.D05G286600 Gossypium hirsutum HOM05D007286 ORTHO05D008955 7.0e-06 56.6 462 23.2
Solyc01g096890.4 Solanum lycopersicum HOM05D007286 ORTHO05D008955 7.0e-06 56.6 614 23.1
TPR.G36317 Trifolium pratense HOM05D007286 ORTHO05D008955 7.0e-06 56.6 380 25.0
PGSC0003DMG401027501 Solanum tuberosum HOM05D007286 ORTHO05D008955 9.2e-06 56.2 612 23.0


User provided reference genes

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