Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 2.0e-33 145.2 73 100.0
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 2.2e-29 131.7 71 94.4
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 9.1e-23 109.8 56 96.4
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 2.0e-22 108.6 56 94.6
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 4.5e-22 107.5 55 96.4
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 4.5e-22 107.5 62 88.7
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 5.9e-22 107.1 59 91.5
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 7.7e-22 106.7 58 91.4
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 7.7e-22 106.7 58 91.4
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 1.0e-21 106.3 57 93.0
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 1.3e-21 105.9 58 89.7
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 1.3e-21 105.9 55 94.5
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 1.7e-21 105.5 59 89.8
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 1.7e-21 105.5 55 94.5
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 1.7e-21 105.5 55 94.5
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 1.7e-21 105.5 55 94.5
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 2.3e-21 105.1 55 94.5
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 2.3e-21 105.1 55 94.5
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 2.3e-21 105.1 55 94.5
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 2.3e-21 105.1 55 94.5
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 2.3e-21 105.1 58 89.7
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 2.3e-21 105.1 55 94.5
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 2.3e-21 105.1 55 94.5
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 2.3e-21 105.1 55 94.5
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 2.3e-21 105.1 55 94.5
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 2.3e-21 105.1 55 94.5
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 2.3e-21 105.1 55 94.5
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 2.3e-21 105.1 55 94.5
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 2.3e-21 105.1 57 93.0
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 2.3e-21 105.1 55 94.5
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 2.9e-21 104.8 63 85.7
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 3.8e-21 104.4 58 87.9
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 3.8e-21 104.4 61 88.5
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 3.8e-21 104.4 58 89.7
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 5.0e-21 104.0 55 92.7
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 8.6e-21 103.2 61 86.9
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 8.6e-21 103.2 55 92.7
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 1.5e-20 102.4 57 89.5
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 4.2e-20 100.9 52 96.2
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 5.5e-20 100.5 55 90.9
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 7.2e-20 100.1 52 94.2
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 9.5e-20 99.8 68 79.4
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 9.5e-20 99.8 52 94.2
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 1.6e-19 99.0 52 92.3
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 1.6e-19 99.0 52 92.3
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 1.6e-19 99.0 57 89.5
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 2.1e-19 98.6 52 92.3
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 2.8e-19 98.2 52 92.3
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 3.6e-19 97.8 52 92.3
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 4.7e-19 97.4 52 92.3
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 4.7e-19 97.4 52 92.3
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 4.7e-19 97.4 52 92.3
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 4.7e-19 97.4 52 92.3
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 6.1e-19 97.1 52 92.3
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 8.0e-19 96.7 52 90.4
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 3.0e-18 94.7 50 92.0
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.2e-17 92.8 52 88.5
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 2.0e-17 92.0 45 100.0
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 4.4e-17 90.9 45 97.8
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.3e-16 89.4 45 95.6
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.3e-16 89.4 45 95.6
C06p47550 Brassica napus HOM05D005752 ORTHO05D006959 1.1e-15 86.3 48 87.5
BolC6t39793H Brassica oleracea HOM05D005752 ORTHO05D006959 1.1e-15 86.3 48 87.5
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 3.2e-15 84.7 52 76.9
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 5.9e-14 80.5 44 86.4
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 1.0e-13 79.7 40 95.0
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 5.0e-13 77.4 41 95.1
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 5.0e-13 77.4 58 69.0
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.1e-12 76.3 39 100.0
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 1.9e-12 75.5 42 92.9
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 2.5e-12 75.1 43 93.0
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 3.3e-12 74.7 37 94.6
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 3.3e-12 74.7 37 94.6
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 4.3e-12 74.3 42 90.5
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 5.6e-12 73.9 39 97.4
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 4.7e-11 70.9 39 94.9
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 8.0e-11 70.1 48 77.1
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 8.9e-10 66.6 35 97.1
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 5.8e-09 63.9 35 91.4
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 6.0e-06 53.9 36 75.0


User provided reference genes

Program Settings